Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Reverse (-)

39350276 .. 39353719

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGAAAGTCAACAAGTTGCTACTGGAGCCGGATACAAGTCATGCAATTATTTGCAACAATCTCAAAAAGGTTTATCCTGGAAGAGATGGGAACCCTGAGAAATTTGGTATGAGAGGGATGTCTCTTGCTTTGTCTCGAGGTGAGTGCTTTGGTATGCTTGGCCCTAGTGGTGCTGGGAAGACCTCTTTTATTAATATGGCAGTGGAAGAATCTTTGAAAAGTGTCAATCTGTTTCATGGTGGGGTTGCAGACAAAAGAGCTGGAAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCGTCGCAATTTCACTAATAGAATCCGGCGAGGCTCATTTCAACCTAAAAACGTCATCAACTCGCTTCGATCCCTTCATGAAACTTGTTCAGAACTTCAATCGAGTTCAGCAGTCCAAGAATCTCGAAGATTGGTCGTCTAGAACTCGAGATATCGGCATTGACTCAAAATTGAACTCAAATCGGGTTATGCTCACCGCCGCCGCTACGGCCGCGCCGCCGTACAAGGCCACCCCGAACAGTGCGCAAGGACCATACGAAGCTAATGGAAGAAGTTTGGTGAGGATTGGTGGCCGGAGGAGGAAGAACTTGCTTGGAGAAGAAAATGGCGATTTCCGGCCGAGAACCCGAGCTGCAGCCATTTTTTTCATTTTTTGGAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

227

Amino Acids

25.07

Weight (kDa)

10.16

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	543
AccII	CGCG	1 cut(s)	512
AciI	CCGC	5 cut(s)	495, 498, 501, 510, 515
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	3 cut(s)	507, 589, 635
AcsI	RAATTY	2 cut(s)	104, 676
AfaI	GTAC	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	220, 340, 397, 472
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	3 cut(s)	263, 560, 650
AluI	AGCT	3 cut(s)	263, 560, 650
Alw26I	GTCTC	2 cut(s)	129, 141
AlwI	GGATC	1 cut(s)	362
Ama87I	CYCGRG	3 cut(s)	138, 444, 645
AoxI	GGCC	5 cut(s)	163, 507, 525, 589, 635
ApeKI	GCWGC	2 cut(s)	650, 653
ApoI	RAATTY	2 cut(s)	104, 676
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	514, 544
AspS9I	GGNCC	2 cut(s)	164, 548
AsuHPI	GGTGA	3 cut(s)	155, 484, 589
AvaI	CYCGRG	3 cut(s)	138, 444, 645
AvaII	GGWCC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	637, 665
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	502, 522
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	129, 141
BfaI	CTAG	2 cut(s)	168, 438
BfmI	CTRYAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	506
BisI	GCNGC	6 cut(s)	498, 501, 510, 515, 651, 654
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	6 cut(s)	499, 502, 511, 516, 652, 655
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	3 cut(s)	138, 444, 645
BmgT120I	GGNCC	2 cut(s)	164, 548
BmiI	GGNNCC	2 cut(s)	30, 95
BmrFI	CCNGG	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	610
BseX3I	CGGCCG	2 cut(s)	507, 635
BseXI	GCAGC	2 cut(s)	637, 665
BseYI	CCCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	512
Bsh1285I	CGRYCG	2 cut(s)	510, 638
BshFI	GGCC	5 cut(s)	165, 509, 527, 591, 637
BsiEI	CGRYCG	2 cut(s)	510, 638
BsiHKCI	CYCGRG	3 cut(s)	138, 444, 645
BsiSI	CCGG	4 cut(s)	32, 324, 592, 634
BsmAI	GTCTC	2 cut(s)	129, 141
BsnI	GGCC	5 cut(s)	165, 509, 527, 591, 637
BsoBI	CYCGRG	3 cut(s)	138, 444, 645
Bsp143I	GATC	1 cut(s)	367
Bsp1720I	GCTNAGC	1 cut(s)	296
BspACI	CCGC	5 cut(s)	495, 498, 501, 510, 515
BspANI	GGCC	5 cut(s)	165, 509, 527, 591, 637
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	30, 95
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	2 cut(s)	79, 281
BstDEI	CTNAG	2 cut(s)	99, 296
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	2 cut(s)	514, 544
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	129, 141
BstMBI	GATC	1 cut(s)	367
BstMCI	CGRYCG	2 cut(s)	510, 638
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 506, 509
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	637, 665
BstV2I	GAAGAC	1 cut(s)	188
BstZI	CGGCCG	2 cut(s)	507, 635
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	5 cut(s)	165, 509, 527, 591, 637
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	210, 544
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	2 cut(s)	514, 544
Cfr13I	GGNCC	2 cut(s)	164, 548
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	3 cut(s)	44, 239, 376
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	99, 296
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	3 cut(s)	507, 589, 635
EagI	CGGCCG	2 cut(s)	507, 635
Eam1104I	CTCTTC	2 cut(s)	79, 281
EarI	CTCTTC	2 cut(s)	79, 281
EclXI	CGGCCG	2 cut(s)	507, 635
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	548
Eco52I	CGGCCG	2 cut(s)	507, 635
Eco88I	CYCGRG	3 cut(s)	138, 444, 645
EcoRII	CCWGG	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	451
FaeI	CATG	3 cut(s)	47, 242, 379
FatI	CATG	3 cut(s)	43, 238, 375
Fnu4HI	GCNGC	6 cut(s)	498, 501, 510, 515, 651, 654
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	6 cut(s)	498, 501, 510, 515, 651, 654
FspBI	CTAG	2 cut(s)	168, 438
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	2 cut(s)	513, 543
GluI	GCNGC	6 cut(s)	498, 501, 510, 515, 651, 654
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	5 cut(s)	165, 509, 527, 591, 637
HapII	CCGG	4 cut(s)	32, 324, 592, 634
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	2 cut(s)	514, 544
Hin1II	CATG	3 cut(s)	47, 242, 379
Hin6I	GCGC	2 cut(s)	512, 542
HinP1I	GCGC	2 cut(s)	512, 542
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	4 cut(s)	212, 320, 418, 461
HpaII	CCGG	4 cut(s)	32, 324, 592, 634
HphI	GGTGA	3 cut(s)	155, 484, 589
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	5 cut(s)	138, 376, 422, 438, 446
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	285, 382
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	47, 57, 251, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 506, 509
HpyF3I	CTNAG	2 cut(s)	99, 296
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	47, 242, 379
HspAI	GCGC	2 cut(s)	512, 542
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	637, 665
MaeI	CTAG	2 cut(s)	168, 438
MaeII	ACGT	1 cut(s)	350
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	8 cut(s)	96, 193, 221, 298, 437, 579, 613, 629
MluCI	AATT	5 cut(s)	48, 104, 306, 467, 676
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	8 cut(s)	110, 134, 196, 272, 322, 573, 588, 591
MseI	TTAA	1 cut(s)	195
MspI	CCGG	4 cut(s)	32, 324, 592, 634
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	28, 506, 509
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	3 cut(s)	47, 242, 379
NlaIV	GGNNCC	2 cut(s)	30, 95
NmeAIII	GCCGAG	1 cut(s)	663
NsbI	TGCGCA	1 cut(s)	543
PaeR7I	CTCGAG	2 cut(s)	138, 444
PagI	TCATGA	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	212, 320, 418
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	6 cut(s)	499, 502, 511, 516, 652, 655
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	30, 95
PspPI	GGNCC	2 cut(s)	164, 548
PstI	CTGCAG	1 cut(s)	655
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	6 cut(s)	498, 501, 510, 515, 651, 654
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	2 cut(s)	164, 548
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	9 cut(s)	75, 145, 188, 265, 283, 345, 353, 562, 652
SfcI	CTRYAG	1 cut(s)	651
Sfr274I	CTCGAG	2 cut(s)	138, 444
SinI	GGWCC	1 cut(s)	548
SlaI	CTCGAG	2 cut(s)	138, 444
SmlI	CTYRAG	2 cut(s)	138, 444
SmoI	CTYRAG	2 cut(s)	138, 444
Sse9I	AATT	5 cut(s)	48, 104, 306, 467, 676
SsiI	CCGC	5 cut(s)	495, 498, 501, 510, 515
SspMI	CTAG	2 cut(s)	168, 438
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	5 cut(s)	139, 366, 400, 423, 445
TasI	AATT	5 cut(s)	48, 104, 306, 467, 676
TauI	GCSGC	4 cut(s)	500, 503, 512, 517
TfiI	GAWTC	3 cut(s)	212, 320, 418
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	210, 544
TseI	GCWGC	2 cut(s)	650, 653
TspDTI	ATGAA	5 cut(s)	227, 299, 364, 392, 655
TspRI	CASTG	2 cut(s)	210, 544
VpaK11BI	GGWCC	1 cut(s)	548
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	2 cut(s)	104, 676
XbaI	TCTAGA	1 cut(s)	437
XhoI	CTCGAG	2 cut(s)	138, 444
XspI	CTAG	2 cut(s)	168, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.