Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Forward (+)

62534368 .. 62535174

Gene Structure 807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGTCATTCTGGGCAAACAGGCTATTGATGATGATTGCAATAAAACTGGGCAAATGGTGGCAGGGCTGTTGAACTGGCCTCAAGGGACTTTTGCTTCAAAGGAATGTGGCAATTGCCATTTTCTTTTTGGAGAAACTTTCTATCACTTTATTGATTTTTTTGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

56

Amino Acids

6.28

Weight (kDa)

4.86

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	73, 99
AoxI	GGCC	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	52, 80
BseNI	ACTGG	2 cut(s)	52, 80
BshFI	GGCC	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	52, 80
BsuRI	GGCC	1 cut(s)	79
CviJI	RGCY	3 cut(s)	23, 67, 79
CviKI_1	RGCY	3 cut(s)	23, 67, 79
FaqI	GGGAC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	39
LpnPI	CCDG	4 cut(s)	5, 33, 48, 61
MaeIII	GTNAC	1 cut(s)	164
MfeI	CAATTG	1 cut(s)	112
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	1 cut(s)	90
MunI	CAATTG	1 cut(s)	112
SgeI	CNNG	6 cut(s)	23, 32, 60, 75, 88, 95
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	112
TasI	AATT	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.