Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Reverse (-)

17179800 .. 17182700

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G187500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAGGATTATGGGGTGAAGGAGTCTTGGACTAAAGAGCACGAGTTTAAAGACCCAGTTGGTTATTTTGGCACTTTCATGTTGAAAGCTATTACTGAGGAAGGGCAAATTTTGGGGATACATCGGGATAGATTGCAGGCTTATACTCCCACAACAACGGGCCTTGTGACGGTTGGGGTTGATGGATTACCTTCGTGGATTTCGGAGGCATGGGACCTTGTTCCGAGATTTGTTTCACTTAAGGATATTGCCAGAGGGTTGCAGCTTGAAGGTGAAAACGTTGAACCAGTAGAGCTTGAGGAGGCTGCCATGAGAAGTAGTCTCATTCAACAAATTGTTGTGGTCGGCCAGGATCAACGGCGACTTGGGGCAATAATTGTTCCAAACAAAGAAGAGGTTTTACTTGCAGCCAAAAAGTTGTCTATTGTAGATGTTAATGCCTCAGACCTCAGTAAGGATAAAATGACAAGCCTGCTATATGAAGAATTAAGAAAATGGACTTCAGGGTGTTCATTTCAAATTGGACCAATCTTGATTGTGGATGAGCCCTTTACGATTGATAGTGGTTTAATGACTCCAACTATGAAAATACGAAGGGACAGAGTTGCGGCACAGTACAAGGAGCAAATAGAGAATCTGTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

216

Amino Acids

24.23

Weight (kDa)

5.14

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	608
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	2 cut(s)	617, 641
AfiI	CCNNNNNNNGG	2 cut(s)	169, 454
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	5 cut(s)	85, 269, 284, 329, 518
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	3 cut(s)	89, 265, 295
AluI	AGCT	3 cut(s)	89, 265, 295
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	160, 346
ApeKI	GCWGC	3 cut(s)	262, 305, 407
ApoI	RAATTY	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	160, 214, 524
AsuHPI	GGTGA	2 cut(s)	28, 284
AvaII	GGWCC	2 cut(s)	214, 524
BanII	GRGCYC	1 cut(s)	549
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BauI	CACGAG	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	274, 292, 419
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	326
BfrI	CTTAAG	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	111
BisI	GCNGC	4 cut(s)	263, 306, 408, 609
BlsI	GCNGC	4 cut(s)	264, 307, 409, 610
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	214, 524
BmgT120I	GGNCC	3 cut(s)	160, 214, 524
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 454
Bse1I	ACTGG	2 cut(s)	56, 287
BseBI	CCWGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	2 cut(s)	169, 454
BseMII	CTCAG	3 cut(s)	87, 456, 463
BseNI	ACTGG	2 cut(s)	56, 287
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	274, 292, 419
BshFI	GGCC	2 cut(s)	162, 348
BsiHKAI	GWGCWC	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	227, 611
BslI	CCNNNNNNNGG	2 cut(s)	169, 454
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	227, 611
BsnI	GGCC	2 cut(s)	162, 348
Bsp1286I	GDGCHC	2 cut(s)	42, 549
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	2 cut(s)	162, 348
BspCNI	CTCAG	3 cut(s)	88, 455, 462
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	56, 287
BssMI	GATC	1 cut(s)	352
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	172, 615
Bst6I	CTCTTC	1 cut(s)	387
BstAFI	CTTAAG	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	138, 473
BstDEI	CTNAG	3 cut(s)	96, 442, 449
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	274, 292, 419
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	162, 348
BtsCI	GGATG	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	138, 473
Cfr13I	GGNCC	3 cut(s)	160, 214, 524
Csp6I	GTAC	2 cut(s)	616, 640
CviAII	CATG	3 cut(s)	79, 210, 310
CviQI	GTAC	2 cut(s)	616, 640
DdeI	CTNAG	3 cut(s)	96, 442, 449
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DraI	TTTAAA	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	214, 524
Eco57I	CTGAAG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	3 cut(s)	82, 213, 313
FaiI	YATR	8 cut(s)	12, 80, 144, 211, 311, 478, 480, 584
FaqI	GGGAC	2 cut(s)	227, 611
FatI	CATG	3 cut(s)	78, 209, 309
Fnu4HI	GCNGC	4 cut(s)	263, 306, 408, 609
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	4 cut(s)	263, 306, 408, 609
GluI	GCNGC	4 cut(s)	263, 306, 408, 609
HaeIII	GGCC	2 cut(s)	162, 348
Hin1II	CATG	3 cut(s)	82, 213, 313
HinfI	GANTC	3 cut(s)	23, 574, 634
HphI	GGTGA	2 cut(s)	28, 284
Hpy188I	TCNGA	3 cut(s)	205, 225, 445
Hpy188III	TCNNGA	2 cut(s)	125, 532
HpyAV	CCTTC	5 cut(s)	13, 95, 201, 263, 588
HpyCH4III	ACNGT	2 cut(s)	172, 615
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	136, 262, 407
HpyF3I	CTNAG	3 cut(s)	96, 442, 449
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	82, 213, 313
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	8 cut(s)	69, 122, 265, 300, 335, 362, 485, 489
Lsp1109I	GCAGC	3 cut(s)	274, 292, 419
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	404, 494
MhlI	GDGCHC	2 cut(s)	42, 549
MluCI	AATT	5 cut(s)	108, 333, 375, 485, 519
MlyI	GAGTC	2 cut(s)	32, 568
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	8 cut(s)	91, 199, 248, 292, 295, 388, 451, 458
MseI	TTAA	5 cut(s)	48, 240, 435, 488, 569
MslI	CAYNNNNRTG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	82, 213, 313
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	634
PkrI	GCNGC	4 cut(s)	264, 307, 409, 610
PleI	GAGTC	2 cut(s)	31, 568
PpsI	GAGTC	2 cut(s)	31, 568
PpuMI	RGGWCCY	1 cut(s)	214
Psp1406I	AACGTT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	160, 214, 524
PspPPI	RGGWCCY	1 cut(s)	214
RsaI	GTAC	2 cut(s)	617, 641
RsaNI	GTAC	2 cut(s)	616, 640
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	5 cut(s)	48, 240, 435, 488, 569
SatI	GCNGC	4 cut(s)	263, 306, 408, 609
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	3 cut(s)	160, 214, 524
SchI	GAGTC	2 cut(s)	32, 568
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	42, 549
SetI	ASST	9 cut(s)	91, 193, 219, 267, 274, 282, 297, 399, 450
SinI	GGWCC	2 cut(s)	214, 524
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	239, 296
SmoI	CTYRAG	2 cut(s)	239, 296
Sse9I	AATT	5 cut(s)	108, 333, 375, 485, 519
SsiI	CCGC	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	172, 615
TaiI	ACGT	1 cut(s)	282
TasI	AATT	5 cut(s)	108, 333, 375, 485, 519
TatI	WGTACW	2 cut(s)	615, 639
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	5 cut(s)	48, 240, 435, 488, 569
Tru9I	TTAA	5 cut(s)	48, 240, 435, 488, 569
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	3 cut(s)	262, 305, 407
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	5 cut(s)	17, 67, 495, 501, 599
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	214, 524
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.