Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Forward (+)

34310980 .. 34322001

Gene Structure 11022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGGCCACCATTTCCTTAGTGCCCAAGTTGAGCCCTTCTGATTGTGGGCAGGCCCTTCAGTTCCTTTTTCCCAACTGCAAATTCAGAAGCACACAACTGTTTCATCATAGAAAGTGTCATGGGAGGCGAGCTGGGCTTCCTCAGAATCGTGGGTTTCGTGTCTCTTGCCTATCAAAGACAGATGAAGTGCAGATAAGAAGGTATTCACCATTTCTAGAAAGTGCATTACTAGATGGTAATGGTACCTTGGTAGCCGATGAGTGGCAGGCAGTTCCTGACATTTGGAGAACTTCAGCTGAGAAATATGGGGATCGTGTAGCATTAACAGATCCGTACCATGATCCACCTTCAAATATGACCTATAAACAGCTGGAACAGGAGATTTTGGACTTCTCTGAAGGCCTAAGAATTGTTGGAGTAAAGCCTGTAGAAAAAATTGCACTTTTTGCTGATAATTCTTGTCGTTGGCTTGTTGCAGATCAGGGCATAATGGCCACTGGAGCAATCAATGTGGCAAGAGGTTCAAGGTCATCAGTTGAAGAATTGATACAAATATACAATCACTCTGAAAGTGTTGCACTTGCTGTGGATAGTCCTGAATTGTTCAATCGGATTGCAGAACCATTCTGTTCCAAGGTTGTCATGAAATTTGTAATTCTGCTTTGGGGGGAGAAGTCAAGCCTGGCCAGTCATGGAAACATCCCTGTGTTTAACTACAAGGATATTCTAGATTTGGGACGAGAAAGCCGCAAGCGTATGCTTAATTCTAATGATGCACGGAAATACTATACACATGAAGCTATCAATTCAAATGATATTGCTACAATAGTATATACAAGTGGAACAACAGGCAACCCGAAAGGTGTCATGCTCACTCATCGAAATTTATTACATCAGATAAGAAACCTCTGGGATGTTGTTCCTGCTGAAATTGGGGACAGATTTCTCAGTATGCTTCCACCATGGCATGCCTATGAACGTGCTGCTGAGTATTTCATATTTACAAATGGAATTGAACAAGTATACACAACTGTGAAGAACTTGAAGTATATAATTACGGCCATTATACTTGCAAAAGCGTTCATTTTAATGGATGATCTGCGACATTATCAACCAAATTATGTCGTTTCAGTTCCTTTAGTGTACGAGACACTTTACAGGGGGATCCAGAAACAGATTTCTACAAGTTCTAAAGCTCGTAAGCTTATTGCACTTTCATTCCTAAGGATCAGTTTGGCATACATGGAGTTTAAGAGAATTTATGAGGGGACATATTTGACAAGGAACCAGAAGCAGCCTTCATATTATGCTTCACTAGTTGATTGGATCGGGGCAAGGATTGTTGCTGCAATATTATGGCCTTTGCATGTGTTGGGAACAAAACTAGTCTATAGTAAAATTCACTCTGCTATTGGAATATCAAAGGCTGGCATCAGCGCTGGAGGTAGTTTGCCAGCACATATTGATAAATTTTTTGAGGCAATAGGCGTAAAACTGCAGAATGGATATGGTTTAACAGAGAGTTCTCCTGCTGTTACTGCTCGGAGACCAAACTGTAATGTTCTTGGTTCAGTTGGGCATCCACTTCGACATACAGAGTTCAAAGTTGTAGACTCTGAAACTGGTGAAGTTCTCCCACCTGGTTCAAGTGGCATTGTAAACGTCAGGGGTCCGCAAGTGATGAAAGGATATTACAAGAATCCAGATGCTACAGAGCAAGTATTAGATAAGGATGGTTGGCTAAGTACTGGTGATATCGGTTGGATTGCTCCTCACCACTCAATAGGTCGAAGCCGTCGTTGTGGAGGTGTTGTTGTCCTTGAAGGACGTGCTAAGGATACTATAGTCCTTTCAACAGGAGAAAACGTTGAACCCGTAGAGCTTGAGGAAGCTGCCATGAGAAGTAGTCTAATTCAACAAATTGTCGTCATTGGCCAGGATCAACGGCGCCTTGGGGCAATAATTGTTCCAAACAAAGAAGAGGCCTTACTTGTAGCGACAAAGACGTTGAGTGTCGATGCTAATACATCTGACCTAAGTAAGGCCAAATTGACAGGCTTGCTGTATGAAGAACTGAGAAAATGGACTTCAGGGTGTTCATTTCAAATTGGACCAATCTTGATTGTGGACGAGCCCTTTACGATTGATAGTGGTTTGATGACTCCAACTATGAAAATTCGAAGAGACAAAGTTGTGGCACAGTTCAAGGAACAAATAGATGAACTCTACAAGAAGAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

747

Amino Acids

83.33

Weight (kDa)

8.89

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	96 - 565	3.1e-74	AMP-binding enzyme
AMP-binding_C_3	PF23562	613 - 663	5.7e-10	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	2 cut(s)	242, 1947
AccI	GTMKAC	2 cut(s)	1023, 1611
AciI	CCGC	2 cut(s)	748, 1673
AclI	AACGTT	1 cut(s)	1866
AclWI	GGATC	8 cut(s)	318, 323, 335, 1159, 1172, 1235, 1334, 1947
AcoI	YGGCCR	5 cut(s)	3, 492, 684, 1059, 1933
AcsI	RAATTY	8 cut(s)	80, 647, 883, 1257, 1398, 1469, 2175, 2236
AcuI	CTGAAG	4 cut(s)	41, 276, 417, 2073
AcyI	GRCGYC	1 cut(s)	1948
AfaI	GTAC	4 cut(s)	244, 335, 1145, 1747
AfeI	AGCGCT	1 cut(s)	1438
AfiI	CCNNNNNNNGG	2 cut(s)	261, 2041
AhlI	ACTAGT	2 cut(s)	1315, 1384
AjiI	CACGTC	1 cut(s)	1829
AjnI	CCWGG	3 cut(s)	681, 1639, 1935
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	1031
AluBI	AGCT	8 cut(s)	131, 296, 370, 800, 1196, 1204, 1882, 1892
AluI	AGCT	8 cut(s)	131, 296, 370, 800, 1196, 1204, 1882, 1892
Alw26I	GTCTC	4 cut(s)	166, 1142, 1540, 2178
AlwI	GGATC	8 cut(s)	318, 323, 335, 1159, 1172, 1235, 1334, 1947
AlwNI	CAGNNNCTG	1 cut(s)	275
Aor51HI	AGCGCT	1 cut(s)	1438
ApeKI	GCWGC	4 cut(s)	983, 1294, 1346, 1892
ApoI	RAATTY	8 cut(s)	80, 647, 883, 1257, 1398, 1469, 2175, 2236
Asp700I	GAANNNNTTC	1 cut(s)	202
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	1439, 1950
AspS9I	GGNCC	3 cut(s)	52, 1670, 2111
AsuHPI	GGTGA	4 cut(s)	198, 1637, 1763, 1766
AsuII	TTCGAA	1 cut(s)	2179
AvaII	GGWCC	2 cut(s)	1670, 2111
AxyI	CCTNAGG	1 cut(s)	1223
BaeGI	GKGCMC	1 cut(s)	24
BaeI	ACNNNNGTAYC	4 cut(s)	234, 267, 1830, 1863
BalI	TGGCCA	4 cut(s)	5, 494, 686, 1935
BamHI	GGATCC	1 cut(s)	1164
BanI	GGYRCC	2 cut(s)	242, 1947
BanII	GRGCYC	2 cut(s)	35, 2136
BarI	GAAGNNNNNNTAC	4 cut(s)	531, 563, 1971, 2003
BbvI	GCAGC	4 cut(s)	970, 1306, 1333, 1879
BccI	CCATC	2 cut(s)	227, 1727
BceAI	ACGGC	3 cut(s)	1074, 1779, 1961
BcgI	CGANNNNNNTGC	2 cut(s)	1568, 1602
BciT130I	CCWGG	3 cut(s)	683, 1641, 1937
BciVI	GTATCC	1 cut(s)	1831
BcoDI	GTCTC	4 cut(s)	166, 1142, 1540, 2178
BcuI	ACTAGT	2 cut(s)	1315, 1384
BfaI	CTAG	5 cut(s)	215, 230, 728, 1316, 1385
BfmI	CTRYAG	5 cut(s)	426, 1390, 1496, 1710, 1842
BfoI	RGCGCY	2 cut(s)	1440, 1951
BfuI	GTATCC	1 cut(s)	1831
BisI	GCNGC	5 cut(s)	748, 984, 1295, 1347, 1893
BlsI	GCNGC	5 cut(s)	749, 985, 1296, 1348, 1894
BmcAI	AGTACT	1 cut(s)	1747
Bme1390I	CCNGG	3 cut(s)	683, 1641, 1937
Bme18I	GGWCC	2 cut(s)	1670, 2111
BmgBI	CACGTC	1 cut(s)	1829
BmgT120I	GGNCC	3 cut(s)	52, 1670, 2111
BmiI	GGNNCC	5 cut(s)	244, 1166, 1286, 1671, 1949
BmrFI	CCNGG	3 cut(s)	683, 1641, 1937
BmsI	GCATC	5 cut(s)	763, 1440, 1588, 1696, 2008
BpmI	CTGGAG	2 cut(s)	519, 1461
Bpu10I	CCTNAGC	1 cut(s)	1833
Bpu14I	TTCGAA	1 cut(s)	2179
BpuEI	CTTGAG	1 cut(s)	1904
BsaHI	GRCGYC	1 cut(s)	1948
BsaI	GGTCTC	1 cut(s)	1540
BsaJI	CCNNGG	4 cut(s)	246, 633, 962, 1951
BsaXI	ACNNNNNCTCC	4 cut(s)	1797, 1827, 1851, 1881
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 2041
Bse1I	ACTGG	4 cut(s)	502, 687, 1627, 1753
Bse21I	CCTNAGG	1 cut(s)	1223
BseBI	CCWGG	3 cut(s)	683, 1641, 1937
BseDI	CCNNGG	4 cut(s)	246, 633, 962, 1951
BseGI	GGATG	5 cut(s)	699, 919, 1099, 1579, 1738
BseLI	CCNNNNNNNGG	2 cut(s)	261, 2041
BseMII	CTCAG	5 cut(s)	155, 288, 961, 978, 2066
BseNI	ACTGG	4 cut(s)	502, 687, 1627, 1753
BseRI	GAGGAG	1 cut(s)	1761
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	970, 1306, 1333, 1879
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	209
BshNI	GGYRCC	2 cut(s)	242, 1947
BslFI	GGGAC	3 cut(s)	750, 950, 1282
BslI	CCNNNNNNNGG	2 cut(s)	261, 2041
BsmAI	GTCTC	4 cut(s)	166, 1142, 1540, 2178
BsmFI	GGGAC	3 cut(s)	750, 950, 1282
Bso31I	GGTCTC	1 cut(s)	1540
Bsp119I	TTCGAA	1 cut(s)	2179
Bsp1286I	GDGCHC	3 cut(s)	24, 35, 2136
Bsp143I	GATC	9 cut(s)	310, 328, 340, 478, 1096, 1164, 1227, 1326, 1939
Bsp19I	CCATGG	1 cut(s)	962
BspACI	CCGC	2 cut(s)	748, 1673
BspCNI	CTCAG	5 cut(s)	154, 289, 960, 979, 2067
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	5 cut(s)	244, 1166, 1286, 1671, 1949
BspMAI	CTGCAG	1 cut(s)	1500
BspPI	GGATC	8 cut(s)	318, 323, 335, 1159, 1172, 1235, 1334, 1947
BspT104I	TTCGAA	1 cut(s)	2179
BspT107I	GGYRCC	2 cut(s)	242, 1947
BspTNI	GGTCTC	1 cut(s)	1540
BsrI	ACTGG	4 cut(s)	502, 687, 1627, 1753
BssECI	CCNNGG	4 cut(s)	246, 633, 962, 1951
BssMI	GATC	9 cut(s)	310, 328, 340, 478, 1096, 1164, 1227, 1326, 1939
BssNAI	GTATAC	1 cut(s)	1024
BssNI	GRCGYC	1 cut(s)	1948
BssT1I	CCWWGG	4 cut(s)	246, 633, 962, 1951
Bst1107I	GTATAC	1 cut(s)	1024
Bst2UI	CCWGG	3 cut(s)	683, 1641, 1937
Bst4CI	ACNGT	4 cut(s)	99, 1033, 1556, 2202
Bst6I	CTCTTC	2 cut(s)	1974, 2176
BstACI	GRCGYC	1 cut(s)	1948
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	2179
BstC8I	GCNNGC	8 cut(s)	51, 129, 267, 752, 969, 1429, 1455, 2060
BstDSI	CCRYGG	1 cut(s)	962
BstENI	CCTNNNNNAGG	1 cut(s)	2039
BstF5I	GGATG	5 cut(s)	699, 919, 1099, 1579, 1738
BstH2I	RGCGCY	2 cut(s)	1440, 1951
BstHHI	GCGC	2 cut(s)	1439, 1950
BstKTI	GATC	9 cut(s)	313, 331, 343, 481, 1099, 1167, 1230, 1329, 1942
BstMAI	GTCTC	4 cut(s)	166, 1142, 1540, 2178
BstMBI	GATC	9 cut(s)	310, 328, 340, 478, 1096, 1164, 1227, 1326, 1939
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 446, 500, 1538
BstNI	CCWGG	3 cut(s)	683, 1641, 1937
BstNSI	RCATGY	2 cut(s)	971, 1370
BstSCI	CCNGG	3 cut(s)	681, 1639, 1935
BstSFI	CTRYAG	5 cut(s)	426, 1390, 1496, 1710, 1842
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	4 cut(s)	970, 1306, 1333, 1879
BstX2I	RGATCY	2 cut(s)	328, 1164
BstYI	RGATCY	2 cut(s)	328, 1164
BstZ17I	GTATAC	1 cut(s)	1024
Bsu36I	CCTNAGG	1 cut(s)	1223
BsuI	GTATCC	1 cut(s)	1831
BtgI	CCRYGG	1 cut(s)	962
BtrI	CACGTC	1 cut(s)	1829
BtsCI	GGATG	5 cut(s)	699, 919, 1099, 1579, 1738
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	8 cut(s)	51, 129, 267, 752, 969, 1429, 1455, 2060
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	642
CfoI	GCGC	2 cut(s)	1439, 1950
Cfr13I	GGNCC	3 cut(s)	52, 1670, 2111
CsiI	ACCWGGT	1 cut(s)	1639
Csp6I	GTAC	4 cut(s)	243, 334, 1144, 1746
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviQI	GTAC	4 cut(s)	243, 334, 1144, 1746
DinI	GGCGCC	1 cut(s)	1949
DpnI	GATC	9 cut(s)	312, 330, 342, 480, 1098, 1166, 1229, 1328, 1941
DpnII	GATC	9 cut(s)	310, 328, 340, 478, 1096, 1164, 1227, 1326, 1939
EaeI	YGGCCR	5 cut(s)	3, 492, 684, 1059, 1933
Eam1104I	CTCTTC	2 cut(s)	1974, 2176
EarI	CTCTTC	2 cut(s)	1974, 2176
Eco130I	CCWWGG	4 cut(s)	246, 633, 962, 1951
Eco147I	AGGCCT	2 cut(s)	402, 1985
Eco24I	GRGCYC	2 cut(s)	35, 2136
Eco31I	GGTCTC	1 cut(s)	1540
Eco32I	GATATC	1 cut(s)	1756
Eco47I	GGWCC	2 cut(s)	1670, 2111
Eco47III	AGCGCT	1 cut(s)	1438
Eco57I	CTGAAG	4 cut(s)	41, 276, 417, 2073
Eco81I	CCTNAGG	1 cut(s)	1223
EcoNI	CCTNNNNNAGG	1 cut(s)	2039
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	2236
EcoRII	CCWGG	3 cut(s)	681, 1639, 1935
EcoRV	GATATC	1 cut(s)	1756
EcoT14I	CCWWGG	4 cut(s)	246, 633, 962, 1951
EcoT38I	GRGCYC	2 cut(s)	35, 2136
EgeI	GGCGCC	1 cut(s)	1949
EheI	GGCGCC	1 cut(s)	1949
ErhI	CCWWGG	4 cut(s)	246, 633, 962, 1951
FaqI	GGGAC	3 cut(s)	750, 950, 1282
FblI	GTMKAC	2 cut(s)	1023, 1611
Fnu4HI	GCNGC	5 cut(s)	748, 984, 1295, 1347, 1893
FokI	GGATG	5 cut(s)	686, 926, 1106, 1566, 1745
FriOI	GRGCYC	2 cut(s)	35, 2136
Fsp4HI	GCNGC	5 cut(s)	748, 984, 1295, 1347, 1893
FspBI	CTAG	5 cut(s)	215, 230, 728, 1316, 1385
GlaI	GCGC	2 cut(s)	1438, 1949
GluI	GCNGC	5 cut(s)	748, 984, 1295, 1347, 1893
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	519, 1461
HaeII	RGCGCY	2 cut(s)	1440, 1951
HhaI	GCGC	2 cut(s)	1439, 1950
Hin1I	GRCGYC	1 cut(s)	1948
Hin6I	GCGC	2 cut(s)	1437, 1948
HinP1I	GCGC	2 cut(s)	1437, 1948
HindIII	AAGCTT	1 cut(s)	1202
HinfI	GANTC	4 cut(s)	145, 1613, 1699, 2161
HphI	GGTGA	4 cut(s)	198, 1637, 1763, 1766
Hpy166II	GTNNAC	5 cut(s)	1024, 1144, 1612, 1660, 2128
Hpy188III	TCNNGA	8 cut(s)	215, 275, 596, 643, 728, 1168, 1703, 2119
Hpy8I	GTNNAC	5 cut(s)	1024, 1144, 1612, 1660, 2128
Hpy99I	CGWCG	1 cut(s)	1800
HpyAV	CCTTC	7 cut(s)	45, 65, 192, 357, 392, 1308, 1817
HpyCH4III	ACNGT	4 cut(s)	99, 1033, 1556, 2202
HpyCH4IV	ACGT	5 cut(s)	979, 1662, 1828, 1866, 2006
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 446, 500, 1538
HpySE526I	ACGT	5 cut(s)	979, 1662, 1828, 1866, 2006
Hsp92I	GRCGYC	1 cut(s)	1948
HspAI	GCGC	2 cut(s)	1437, 1948
KasI	GGCGCC	1 cut(s)	1947
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	9 cut(s)	310, 328, 340, 478, 1096, 1164, 1227, 1326, 1939
LmnI	GCTCC	2 cut(s)	500, 1774
Lsp1109I	GCAGC	4 cut(s)	970, 1306, 1333, 1879
LweI	GCATC	5 cut(s)	763, 1440, 1588, 1696, 2008
MabI	ACCWGGT	1 cut(s)	1639
MaeI	CTAG	5 cut(s)	215, 230, 728, 1316, 1385
MaeII	ACGT	5 cut(s)	979, 1662, 1828, 1866, 2006
MaeIII	GTNAC	1 cut(s)	1534
MalI	GATC	9 cut(s)	312, 330, 342, 480, 1098, 1166, 1229, 1328, 1941
MboI	GATC	9 cut(s)	310, 328, 340, 478, 1096, 1164, 1227, 1326, 1939
MboII	GAAGA	5 cut(s)	551, 1048, 1991, 2081, 2193
MflI	RGATCY	2 cut(s)	328, 1164
MhlI	GDGCHC	3 cut(s)	24, 35, 2136
MlsI	TGGCCA	4 cut(s)	5, 494, 686, 1935
MluNI	TGGCCA	4 cut(s)	5, 494, 686, 1935
Mly113I	GGCGCC	1 cut(s)	1948
MlyI	GAGTC	2 cut(s)	1607, 2155
MmeI	TCCRAC	3 cut(s)	394, 1742, 2189
Mox20I	TGGCCA	4 cut(s)	5, 494, 686, 1935
MroXI	GAANNNNTTC	1 cut(s)	202
MscI	TGGCCA	4 cut(s)	5, 494, 686, 1935
MseI	TTAA	6 cut(s)	323, 711, 762, 1088, 1251, 1514
MslI	CAYNNNNRTG	4 cut(s)	704, 972, 1031, 1088
Msp20I	TGGCCA	4 cut(s)	5, 494, 686, 1935
MspA1I	CMGCKG	2 cut(s)	296, 370
MspR9I	CCNGG	3 cut(s)	683, 1641, 1937
MvaI	CCWGG	3 cut(s)	683, 1641, 1937
MwoI	GCNNNNNNNGC	4 cut(s)	133, 446, 500, 1538
NarI	GGCGCC	1 cut(s)	1948
NcoI	CCATGG	1 cut(s)	962
NdeII	GATC	9 cut(s)	310, 328, 340, 478, 1096, 1164, 1227, 1326, 1939
NlaIV	GGNNCC	5 cut(s)	244, 1166, 1286, 1671, 1949
NspI	RCATGY	2 cut(s)	971, 1370
NspV	TTCGAA	1 cut(s)	2179
OliI	CACNNNNGTG	1 cut(s)	1031
PaeI	GCATGC	1 cut(s)	971
PagI	TCATGA	1 cut(s)	642
PceI	AGGCCT	2 cut(s)	402, 1985
PcsI	WCGNNNNNNNCGW	3 cut(s)	154, 1795, 1872
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	145, 1699
PkrI	GCNGC	5 cut(s)	749, 985, 1296, 1348, 1894
PleI	GAGTC	2 cut(s)	1607, 2155
PluTI	GGCGCC	1 cut(s)	1951
PpsI	GAGTC	2 cut(s)	1607, 2155
Psp1406I	AACGTT	1 cut(s)	1866
Psp6I	CCWGG	3 cut(s)	681, 1639, 1935
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	3 cut(s)	681, 1639, 1935
PspN4I	GGNNCC	5 cut(s)	244, 1166, 1286, 1671, 1949
PspPI	GGNCC	3 cut(s)	52, 1670, 2111
PstI	CTGCAG	1 cut(s)	1500
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	328, 1164
PvuII	CAGCTG	2 cut(s)	296, 370
RsaI	GTAC	4 cut(s)	244, 335, 1145, 1747
RsaNI	GTAC	4 cut(s)	243, 334, 1144, 1746
RseI	CAYNNNNRTG	4 cut(s)	704, 972, 1031, 1088
SaqAI	TTAA	6 cut(s)	323, 711, 762, 1088, 1251, 1514
SatI	GCNGC	5 cut(s)	748, 984, 1295, 1347, 1893
Sau3AI	GATC	9 cut(s)	310, 328, 340, 478, 1096, 1164, 1227, 1326, 1939
Sau96I	GGNCC	3 cut(s)	52, 1670, 2111
ScaI	AGTACT	1 cut(s)	1747
SchI	GAGTC	2 cut(s)	1607, 2155
ScrFI	CCNGG	3 cut(s)	683, 1641, 1937
SduI	GDGCHC	3 cut(s)	24, 35, 2136
SexAI	ACCWGGT	1 cut(s)	1639
SfaNI	GCATC	5 cut(s)	763, 1440, 1588, 1696, 2008
SfcI	CTRYAG	5 cut(s)	426, 1390, 1496, 1710, 1842
SfoI	GGCGCC	1 cut(s)	1949
SfuI	TTCGAA	1 cut(s)	2179
SinI	GGWCC	2 cut(s)	1670, 2111
SmiMI	CAYNNNNRTG	4 cut(s)	704, 972, 1031, 1088
SmlI	CTYRAG	1 cut(s)	1883
SmoI	CTYRAG	1 cut(s)	1883
SpeI	ACTAGT	2 cut(s)	1315, 1384
SphI	GCATGC	1 cut(s)	971
SseBI	AGGCCT	2 cut(s)	402, 1985
SsiI	CCGC	2 cut(s)	748, 1673
SspDI	GGCGCC	1 cut(s)	1947
SspI	AATATT	1 cut(s)	1353
SspMI	CTAG	5 cut(s)	215, 230, 728, 1316, 1385
StuI	AGGCCT	2 cut(s)	402, 1985
StyD4I	CCNGG	3 cut(s)	681, 1639, 1935
StyI	CCWWGG	4 cut(s)	246, 633, 962, 1951
TaaI	ACNGT	4 cut(s)	99, 1033, 1556, 2202
TaiI	ACGT	5 cut(s)	982, 1665, 1831, 1869, 2009
TaqI	TCGA	5 cut(s)	880, 1588, 1789, 2016, 2179
TatI	WGTACW	1 cut(s)	1745
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	2 cut(s)	145, 1699
Tru1I	TTAA	6 cut(s)	323, 711, 762, 1088, 1251, 1514
Tru9I	TTAA	6 cut(s)	323, 711, 762, 1088, 1251, 1514
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	4 cut(s)	983, 1294, 1346, 1892
TspGWI	ACGGA	2 cut(s)	321, 793
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	2 cut(s)	1670, 2111
XagI	CCTNNNNNAGG	1 cut(s)	2039
XapI	RAATTY	8 cut(s)	80, 647, 883, 1257, 1398, 1469, 2175, 2236
XbaI	TCTAGA	2 cut(s)	214, 727
XceI	RCATGY	2 cut(s)	971, 1370
XmiI	GTMKAC	2 cut(s)	1023, 1611
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	5 cut(s)	215, 230, 728, 1316, 1385
ZrmI	AGTACT	1 cut(s)	1747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.