Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Forward (+)

40435797 .. 40448511

Gene Structure 12715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGGCCTCCATTTCCTTGGTGCCCAAGTTGAGCTCTTCTGATTGTGGGCAGGCCCTTCAGTCCCTTTTTCCCAGCTGCAGATTCAGAAGCACGCAACTCTTTCATCATAGAAAATGCCATGGGAGGCGAGCTGGGCTTCCTCAGAATCGTGGGTTTCGTGTCTTTTGCCAATCAAAGACAGAAGAAGTACAGATAAGAAGGTATTCACCATTTCTAGAAAGTGCATTACTAGATGGTAATGGTACCTTGGTAGCTGATGAGTGGCAGGCAGTTCCTGACATTTGGAGAACTTCAGCTGAGAAATATGGGGATCGTGTTGCATTAACAGATCCGTACCATGATCCACCTTCAAATATGACCTATAAACAGCTGGAACAAGAGATTTTGGATTTTTCTGAAGGCCTAAGAATTGTTGGAGTAAAGCCTGTAGAAAAAATTGCACTTTTTGCTGATAATTCTTGTCGTTGGCTTGTTGCTGATCAGGGCATAATGGCCACTGGAGCAATCAATGTGGTAAGAGGTTCAAGGTCATCAGTTGAAGAATTGATACAAATATACAATCACTCTGAAAGTGTTGCACTTGCTGTGGATAGTCCTGAATTGTTCAATCGGATTGCAGAACCATTCTGTTCCAAGGTTGTCATGAAATTTATAATTCTGCTTTGGGGGGAGAAGTCAAGCCTGGCCGGTCATGGAAACATTCCTGTGTTTAACTACAAGGATATTCTAGATTTGGGACGAGAAAGCCGCAAGTGTATGCTTAATTCTAATGATGCACGGAAATACTATACACATGAAGCTATCAATTCAAATGATATTGCTACACTAGTATATACAAGTGGAACAACAGGCAACCCGAAAGGTGTCATGCTCACTCATCGAAATTTATTACATCAGATAAGAAACCTCTGGGATGTTGTACCTGCTGAAATTGGGGACAGATTTCTCAGTATGCTTCCACCATGGCATGCCTATGAACGAGCTGCTGAGTATTTCACATTTACATATGGAATTGAACAAGTATACACAACTGTGAAGAACTTGAAGGATGATCTGCGACATTATCAACCAAATTATGTCGTTTCAGTTCCTTTAGTGTATGAGACACTTTACAGGGGGATCCAGAAGCAGATTTCTACAAGTTCTAAAGCTCGTAAGCTTATTGCACTTTCATTCCTAAGGATCAGTTTGGCATACATGGAGTTTAAGAGAATTTATGAGGGGACATATTTGACAAGGAACCAGAAGCAGCCTTCATATTGTGCTTCACTAGTTGATTGGATGGGGGCAAGGATTGTTGCTGCAATATTATGGCCTTTGCATGTGTTGGGAACAAAACTAGTCTATAGTAAAATTCACTCTGCTATTGGAATATCAAAGGCTGGCATCAGTGGAGGAGGTAGTTTGCCAGCACATATTGATAAATTTTTTGAGGCAATAGGCGTAAAAGTGCAGAATGGATATGGTTTAACAGAGAGTTCTCCTGTTGTTGCTGCTCGGAGACCAAACTGTAATGTTCTTGGTTCAGTTGGGCATCCACTTCGACATACAGAGTTCAAAGTTGTAGACTCTGAAACTGGTGAAGTTCTCCCACCTGGTTCAAGTGGCATTGTAAACGTCAGGGGTCCGCAAGTGATGAAAGGATATTACAAGAATCCAGATGCTACAAAGCAAGTATTAGACGAGGATGGTTGGCTAAGTACTGGAGATATTGGTTGGATTGCTCCTCATCACTCAATAGGTAGAAGCCGTCGTTGTGGAGGTGTTGTTGTCCTTGAAGGACGTGCTAAGGATACTATAGTCCTTTCAACAGGAGAAAACGTTGAACCCGTAGAGCTTGAGGAAGCTGCCATGAGAAGTAGTCTAATTCAACAAATTGTCGTCATTGGCCAGGATCAACGGCGCCTTGGGGCAATAATTGTTCCAAACAAAGAAGAGGCCTTACTTGCAGCGACAAAGACGTTGAGTGTCGATGCTAATACATCTGACCTAATTCAGGACAAATTGACAGGCTTGCTATATGAAGAACTGAGAAAGTGGACTTCAGGGTTTTCATTTCAAATTGGACCAATCTTGATTGTGGACGAGCCCTTTACGATTGATAGTGGTTTGATGACTCCAACTATGAAAATTCGAAGAGACAAAGTTGTGGCACAGTTCAAGGAACAAATAGATGAACTCTACAAGAAAAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

732

Amino Acids

81.67

Weight (kDa)

8.57

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	96 - 550	4.7e-76	AMP-binding enzyme
AMP-binding_C_3	PF23562	598 - 652	3.7e-10	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	931
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	3 cut(s)	19, 242, 1902
AccI	GTMKAC	2 cut(s)	1023, 1566
AciI	CCGC	2 cut(s)	748, 1628
AclI	AACGTT	1 cut(s)	1821
AclWI	GGATC	7 cut(s)	318, 323, 335, 1114, 1127, 1190, 1902
AcoI	YGGCCR	3 cut(s)	492, 684, 1888
AcsI	RAATTY	7 cut(s)	647, 883, 1212, 1353, 1424, 2130, 2191
AcuI	CTGAAG	4 cut(s)	41, 276, 417, 2028
AcyI	GRCGYC	1 cut(s)	1903
AfaI	GTAC	5 cut(s)	189, 244, 335, 921, 1702
AfiI	CCNNNNNNNGG	1 cut(s)	1996
AhlI	ACTAGT	3 cut(s)	826, 1270, 1339
AjiI	CACGTC	1 cut(s)	1784
AjnI	CCWGG	3 cut(s)	681, 1594, 1890
AleI	CACNNNNGTG	1 cut(s)	1031
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	3 cut(s)	1097, 1495, 2133
AlwI	GGATC	7 cut(s)	318, 323, 335, 1114, 1127, 1190, 1902
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	8 cut(s)	3, 51, 400, 492, 684, 1313, 1888, 1938
ApeKI	GCWGC	7 cut(s)	75, 983, 1249, 1301, 1493, 1847, 1949
ApoI	RAATTY	7 cut(s)	647, 883, 1212, 1353, 1424, 2130, 2191
Asp700I	GAANNNNTTC	1 cut(s)	202
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	1905
AspS9I	GGNCC	3 cut(s)	52, 1625, 2066
AsuHPI	GGTGA	2 cut(s)	198, 1592
AsuII	TTCGAA	1 cut(s)	2134
AvaII	GGWCC	2 cut(s)	1625, 2066
AxyI	CCTNAGG	1 cut(s)	1178
BaeGI	GKGCMC	1 cut(s)	24
BaeI	ACNNNNGTAYC	4 cut(s)	234, 267, 1785, 1818
BalI	TGGCCA	2 cut(s)	494, 1890
BamHI	GGATCC	1 cut(s)	1119
BanI	GGYRCC	3 cut(s)	19, 242, 1902
BanII	GRGCYC	2 cut(s)	35, 2091
BarI	GAAGNNNNNNTAC	4 cut(s)	531, 563, 1926, 1958
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	7 cut(s)	62, 970, 1261, 1288, 1480, 1834, 1961
BccI	CCATC	3 cut(s)	227, 1276, 1682
BceAI	ACGGC	2 cut(s)	1734, 1916
BcgI	CGANNNNNNTGC	2 cut(s)	1523, 1557
BciT130I	CCWGG	3 cut(s)	683, 1596, 1892
BciVI	GTATCC	1 cut(s)	1786
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	3 cut(s)	1097, 1495, 2133
BcuI	ACTAGT	3 cut(s)	826, 1270, 1339
BfaI	CTAG	6 cut(s)	215, 230, 728, 827, 1271, 1340
BfmI	CTRYAG	4 cut(s)	76, 426, 1345, 1797
BfoI	RGCGCY	1 cut(s)	1906
BfuAI	ACCTGC	1 cut(s)	931
BfuI	GTATCC	1 cut(s)	1786
BisI	GCNGC	8 cut(s)	76, 748, 984, 1250, 1302, 1494, 1848, 1950
BlsI	GCNGC	8 cut(s)	77, 749, 985, 1251, 1303, 1495, 1849, 1951
BmcAI	AGTACT	1 cut(s)	1702
Bme1390I	CCNGG	3 cut(s)	683, 1596, 1892
Bme18I	GGWCC	2 cut(s)	1625, 2066
BmgBI	CACGTC	1 cut(s)	1784
BmgT120I	GGNCC	3 cut(s)	52, 1625, 2066
BmiI	GGNNCC	6 cut(s)	21, 244, 1121, 1241, 1626, 1904
BmrFI	CCNGG	3 cut(s)	683, 1596, 1892
BmsI	GCATC	5 cut(s)	763, 1395, 1543, 1651, 1963
BpmI	CTGGAG	2 cut(s)	519, 1725
Bpu10I	CCTNAGC	1 cut(s)	1788
Bpu14I	TTCGAA	1 cut(s)	2134
BpuEI	CTTGAG	1 cut(s)	1859
BsaHI	GRCGYC	1 cut(s)	1903
BsaI	GGTCTC	1 cut(s)	1495
BsaJI	CCNNGG	6 cut(s)	15, 118, 246, 633, 962, 1906
BsaXI	ACNNNNNCTCC	4 cut(s)	1752, 1782, 1806, 1836
Bsc4I	CCNNNNNNNGG	1 cut(s)	1996
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	3 cut(s)	502, 1582, 1708
Bse21I	CCTNAGG	1 cut(s)	1178
BseBI	CCWGG	3 cut(s)	683, 1596, 1892
BseDI	CCNNGG	6 cut(s)	15, 118, 246, 633, 962, 1906
BseGI	GGATG	5 cut(s)	919, 1054, 1287, 1534, 1693
BseLI	CCNNNNNNNGG	1 cut(s)	1996
BseMII	CTCAG	5 cut(s)	155, 288, 961, 978, 2021
BseNI	ACTGG	3 cut(s)	502, 1582, 1708
BseRI	GAGGAG	2 cut(s)	1410, 1716
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	7 cut(s)	62, 970, 1261, 1288, 1480, 1834, 1961
BseYI	CCCAGC	2 cut(s)	71, 131
BsgI	GTGCAG	1 cut(s)	1472
BshFI	GGCC	8 cut(s)	5, 53, 402, 494, 686, 1315, 1890, 1940
BshNI	GGYRCC	3 cut(s)	19, 242, 1902
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	4 cut(s)	46, 750, 950, 1237
BslI	CCNNNNNNNGG	1 cut(s)	1996
BsmAI	GTCTC	3 cut(s)	1097, 1495, 2133
BsmFI	GGGAC	4 cut(s)	46, 750, 950, 1237
BsnI	GGCC	8 cut(s)	5, 53, 402, 494, 686, 1315, 1890, 1940
Bso31I	GGTCTC	1 cut(s)	1495
Bsp119I	TTCGAA	1 cut(s)	2134
Bsp1286I	GDGCHC	3 cut(s)	24, 35, 2091
Bsp143I	GATC	8 cut(s)	310, 328, 340, 478, 1051, 1119, 1182, 1894
Bsp19I	CCATGG	2 cut(s)	118, 962
BspACI	CCGC	2 cut(s)	748, 1628
BspANI	GGCC	8 cut(s)	5, 53, 402, 494, 686, 1315, 1890, 1940
BspCNI	CTCAG	5 cut(s)	154, 289, 960, 979, 2022
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	6 cut(s)	21, 244, 1121, 1241, 1626, 1904
BspMAI	CTGCAG	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	7 cut(s)	318, 323, 335, 1114, 1127, 1190, 1902
BspQI	GCTCTTC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	2134
BspT107I	GGYRCC	3 cut(s)	19, 242, 1902
BspTNI	GGTCTC	1 cut(s)	1495
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	502, 1582, 1708
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	6 cut(s)	15, 118, 246, 633, 962, 1906
BssMI	GATC	8 cut(s)	310, 328, 340, 478, 1051, 1119, 1182, 1894
BssNAI	GTATAC	1 cut(s)	1024
BssNI	GRCGYC	1 cut(s)	1903
BssT1I	CCWWGG	6 cut(s)	15, 118, 246, 633, 962, 1906
Bst1107I	GTATAC	1 cut(s)	1024
Bst2UI	CCWGG	3 cut(s)	683, 1596, 1892
Bst4CI	ACNGT	3 cut(s)	1033, 1511, 2157
Bst6I	CTCTTC	3 cut(s)	40, 1929, 2131
BstACI	GRCGYC	1 cut(s)	1903
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	2134
BstC8I	GCNNGC	8 cut(s)	51, 92, 129, 267, 969, 1384, 1410, 2015
BstDSI	CCRYGG	2 cut(s)	118, 962
BstENI	CCTNNNNNAGG	1 cut(s)	1994
BstF5I	GGATG	5 cut(s)	919, 1054, 1287, 1534, 1693
BstH2I	RGCGCY	1 cut(s)	1906
BstHHI	GCGC	1 cut(s)	1905
BstKTI	GATC	8 cut(s)	313, 331, 343, 481, 1054, 1122, 1185, 1897
BstMAI	GTCTC	3 cut(s)	1097, 1495, 2133
BstMBI	GATC	8 cut(s)	310, 328, 340, 478, 1051, 1119, 1182, 1894
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 446, 500, 1946
BstNI	CCWGG	3 cut(s)	683, 1596, 1892
BstNSI	RCATGY	2 cut(s)	971, 1325
BstSCI	CCNGG	3 cut(s)	681, 1594, 1890
BstSFI	CTRYAG	4 cut(s)	76, 426, 1345, 1797
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	7 cut(s)	62, 970, 1261, 1288, 1480, 1834, 1961
BstX2I	RGATCY	2 cut(s)	328, 1119
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	2 cut(s)	328, 1119
BstZ17I	GTATAC	1 cut(s)	1024
Bsu36I	CCTNAGG	1 cut(s)	1178
BsuI	GTATCC	1 cut(s)	1786
BsuRI	GGCC	8 cut(s)	5, 53, 402, 494, 686, 1315, 1890, 1940
BtgI	CCRYGG	2 cut(s)	118, 962
BtrI	CACGTC	1 cut(s)	1784
BtsCI	GGATG	5 cut(s)	919, 1054, 1287, 1534, 1693
BtsIMutI	CAGTG	2 cut(s)	495, 1396
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	8 cut(s)	51, 92, 129, 267, 969, 1384, 1410, 2015
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	642
CfoI	GCGC	1 cut(s)	1905
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	3 cut(s)	52, 1625, 2066
CsiI	ACCWGGT	1 cut(s)	1594
Csp6I	GTAC	5 cut(s)	188, 243, 334, 920, 1701
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviQI	GTAC	5 cut(s)	188, 243, 334, 920, 1701
DinI	GGCGCC	1 cut(s)	1904
DpnI	GATC	8 cut(s)	312, 330, 342, 480, 1053, 1121, 1184, 1896
DpnII	GATC	8 cut(s)	310, 328, 340, 478, 1051, 1119, 1182, 1894
EaeI	YGGCCR	3 cut(s)	492, 684, 1888
Eam1104I	CTCTTC	3 cut(s)	40, 1929, 2131
EarI	CTCTTC	3 cut(s)	40, 1929, 2131
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	6 cut(s)	15, 118, 246, 633, 962, 1906
Eco147I	AGGCCT	2 cut(s)	402, 1940
Eco24I	GRGCYC	2 cut(s)	35, 2091
Eco31I	GGTCTC	1 cut(s)	1495
Eco47I	GGWCC	2 cut(s)	1625, 2066
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	4 cut(s)	41, 276, 417, 2028
Eco81I	CCTNAGG	1 cut(s)	1178
EcoICRI	GAGCTC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	1994
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	3 cut(s)	681, 1594, 1890
EcoT14I	CCWWGG	6 cut(s)	15, 118, 246, 633, 962, 1906
EcoT38I	GRGCYC	2 cut(s)	35, 2091
EgeI	GGCGCC	1 cut(s)	1904
EheI	GGCGCC	1 cut(s)	1904
ErhI	CCWWGG	6 cut(s)	15, 118, 246, 633, 962, 1906
FaqI	GGGAC	4 cut(s)	46, 750, 950, 1237
FauNDI	CATATG	1 cut(s)	1006
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	2 cut(s)	1023, 1566
Fnu4HI	GCNGC	8 cut(s)	76, 748, 984, 1250, 1302, 1494, 1848, 1950
FokI	GGATG	5 cut(s)	926, 1061, 1294, 1521, 1700
FriOI	GRGCYC	2 cut(s)	35, 2091
Fsp4HI	GCNGC	8 cut(s)	76, 748, 984, 1250, 1302, 1494, 1848, 1950
FspBI	CTAG	6 cut(s)	215, 230, 728, 827, 1271, 1340
GlaI	GCGC	1 cut(s)	1904
GluI	GCNGC	8 cut(s)	76, 748, 984, 1250, 1302, 1494, 1848, 1950
GsaI	CCCAGC	2 cut(s)	75, 135
GsuI	CTGGAG	2 cut(s)	519, 1725
HaeII	RGCGCY	1 cut(s)	1906
HaeIII	GGCC	8 cut(s)	5, 53, 402, 494, 686, 1315, 1890, 1940
HapII	CCGG	1 cut(s)	687
HhaI	GCGC	1 cut(s)	1905
Hin1I	GRCGYC	1 cut(s)	1903
Hin6I	GCGC	1 cut(s)	1903
HinP1I	GCGC	1 cut(s)	1903
HindIII	AAGCTT	1 cut(s)	1157
HinfI	GANTC	5 cut(s)	81, 145, 1568, 1654, 2116
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	2 cut(s)	198, 1592
Hpy166II	GTNNAC	5 cut(s)	1024, 1567, 1615, 2040, 2083
Hpy188III	TCNNGA	9 cut(s)	215, 275, 596, 643, 728, 1123, 1658, 1997, 2074
Hpy8I	GTNNAC	5 cut(s)	1024, 1567, 1615, 2040, 2083
Hpy99I	CGWCG	1 cut(s)	1755
HpyAV	CCTTC	7 cut(s)	65, 192, 357, 392, 1039, 1263, 1772
HpyCH4III	ACNGT	3 cut(s)	1033, 1511, 2157
HpyCH4IV	ACGT	4 cut(s)	1617, 1783, 1821, 1961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 446, 500, 1946
HpySE526I	ACGT	4 cut(s)	1617, 1783, 1821, 1961
Hsp92I	GRCGYC	1 cut(s)	1903
HspAI	GCGC	1 cut(s)	1903
KasI	GGCGCC	1 cut(s)	1902
KpnI	GGTACC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	8 cut(s)	310, 328, 340, 478, 1051, 1119, 1182, 1894
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	500, 1729
Lsp1109I	GCAGC	7 cut(s)	62, 970, 1261, 1288, 1480, 1834, 1961
LweI	GCATC	5 cut(s)	763, 1395, 1543, 1651, 1963
MabI	ACCWGGT	1 cut(s)	1594
MaeI	CTAG	6 cut(s)	215, 230, 728, 827, 1271, 1340
MaeII	ACGT	4 cut(s)	1617, 1783, 1821, 1961
MalI	GATC	8 cut(s)	312, 330, 342, 480, 1053, 1121, 1184, 1896
MboI	GATC	8 cut(s)	310, 328, 340, 478, 1051, 1119, 1182, 1894
MboII	GAAGA	7 cut(s)	27, 194, 551, 1048, 1946, 2036, 2148
MflI	RGATCY	2 cut(s)	328, 1119
MhlI	GDGCHC	3 cut(s)	24, 35, 2091
MlsI	TGGCCA	2 cut(s)	494, 1890
MluNI	TGGCCA	2 cut(s)	494, 1890
Mly113I	GGCGCC	1 cut(s)	1903
MlyI	GAGTC	2 cut(s)	1562, 2110
MmeI	TCCRAC	3 cut(s)	394, 1697, 2144
Mox20I	TGGCCA	2 cut(s)	494, 1890
MroXI	GAANNNNTTC	1 cut(s)	202
MscI	TGGCCA	2 cut(s)	494, 1890
MseI	TTAA	5 cut(s)	323, 711, 762, 1206, 1469
MslI	CAYNNNNRTG	3 cut(s)	704, 972, 1031
Msp20I	TGGCCA	2 cut(s)	494, 1890
MspA1I	CMGCKG	3 cut(s)	75, 296, 370
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	3 cut(s)	683, 1596, 1892
MvaI	CCWGG	3 cut(s)	683, 1596, 1892
MwoI	GCNNNNNNNGC	4 cut(s)	133, 446, 500, 1946
NarI	GGCGCC	1 cut(s)	1903
NcoI	CCATGG	2 cut(s)	118, 962
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	8 cut(s)	310, 328, 340, 478, 1051, 1119, 1182, 1894
NlaIV	GGNNCC	6 cut(s)	21, 244, 1121, 1241, 1626, 1904
NspI	RCATGY	2 cut(s)	971, 1325
NspV	TTCGAA	1 cut(s)	2134
OliI	CACNNNNGTG	1 cut(s)	1031
PaeI	GCATGC	1 cut(s)	971
PagI	TCATGA	1 cut(s)	642
PceI	AGGCCT	2 cut(s)	402, 1940
PciSI	GCTCTTC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 1827
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	81, 145, 1654
PkrI	GCNGC	8 cut(s)	77, 749, 985, 1251, 1303, 1495, 1849, 1951
PleI	GAGTC	2 cut(s)	1562, 2110
PluTI	GGCGCC	1 cut(s)	1906
PpsI	GAGTC	2 cut(s)	1562, 2110
PsiI	TTATAA	1 cut(s)	653
Psp124BI	GAGCTC	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	1821
Psp6I	CCWGG	3 cut(s)	681, 1594, 1890
PspFI	CCCAGC	2 cut(s)	71, 131
PspGI	CCWGG	3 cut(s)	681, 1594, 1890
PspN4I	GGNNCC	6 cut(s)	21, 244, 1121, 1241, 1626, 1904
PspPI	GGNCC	3 cut(s)	52, 1625, 2066
PstI	CTGCAG	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	328, 1119
PvuII	CAGCTG	3 cut(s)	75, 296, 370
RsaI	GTAC	5 cut(s)	189, 244, 335, 921, 1702
RsaNI	GTAC	5 cut(s)	188, 243, 334, 920, 1701
RseI	CAYNNNNRTG	3 cut(s)	704, 972, 1031
SacI	GAGCTC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	5 cut(s)	323, 711, 762, 1206, 1469
SatI	GCNGC	8 cut(s)	76, 748, 984, 1250, 1302, 1494, 1848, 1950
Sau3AI	GATC	8 cut(s)	310, 328, 340, 478, 1051, 1119, 1182, 1894
Sau96I	GGNCC	3 cut(s)	52, 1625, 2066
ScaI	AGTACT	1 cut(s)	1702
SchI	GAGTC	2 cut(s)	1562, 2110
ScrFI	CCNGG	3 cut(s)	683, 1596, 1892
SduI	GDGCHC	3 cut(s)	24, 35, 2091
SexAI	ACCWGGT	1 cut(s)	1594
SfaNI	GCATC	5 cut(s)	763, 1395, 1543, 1651, 1963
SfcI	CTRYAG	4 cut(s)	76, 426, 1345, 1797
SfoI	GGCGCC	1 cut(s)	1904
SfuI	TTCGAA	1 cut(s)	2134
SinI	GGWCC	2 cut(s)	1625, 2066
SmiMI	CAYNNNNRTG	3 cut(s)	704, 972, 1031
SmlI	CTYRAG	1 cut(s)	1838
SmoI	CTYRAG	1 cut(s)	1838
SpeI	ACTAGT	3 cut(s)	826, 1270, 1339
SphI	GCATGC	1 cut(s)	971
SseBI	AGGCCT	2 cut(s)	402, 1940
SsiI	CCGC	2 cut(s)	748, 1628
SspDI	GGCGCC	1 cut(s)	1902
SspI	AATATT	1 cut(s)	1308
SspMI	CTAG	6 cut(s)	215, 230, 728, 827, 1271, 1340
SstI	GAGCTC	1 cut(s)	35
StuI	AGGCCT	2 cut(s)	402, 1940
StyD4I	CCNGG	3 cut(s)	681, 1594, 1890
StyI	CCWWGG	6 cut(s)	15, 118, 246, 633, 962, 1906
TaaI	ACNGT	3 cut(s)	1033, 1511, 2157
TaiI	ACGT	4 cut(s)	1620, 1786, 1824, 1964
TaqI	TCGA	4 cut(s)	880, 1543, 1971, 2134
TatI	WGTACW	2 cut(s)	187, 1700
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	3 cut(s)	81, 145, 1654
Tru1I	TTAA	5 cut(s)	323, 711, 762, 1206, 1469
Tru9I	TTAA	5 cut(s)	323, 711, 762, 1206, 1469
TscAI	CASTG	2 cut(s)	502, 1396
TseI	GCWGC	7 cut(s)	75, 983, 1249, 1301, 1493, 1847, 1949
TspGWI	ACGGA	2 cut(s)	321, 793
TspRI	CASTG	2 cut(s)	502, 1396
VpaK11BI	GGWCC	2 cut(s)	1625, 2066
XagI	CCTNNNNNAGG	1 cut(s)	1994
XapI	RAATTY	7 cut(s)	647, 883, 1212, 1353, 1424, 2130, 2191
XbaI	TCTAGA	2 cut(s)	214, 727
XceI	RCATGY	2 cut(s)	971, 1325
XmiI	GTMKAC	2 cut(s)	1023, 1566
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	6 cut(s)	215, 230, 728, 827, 1271, 1340
ZrmI	AGTACT	1 cut(s)	1702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.