Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Forward (+)

18763561 .. 18765900

Gene Structure 2340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTTACTTCAAGGAAGAAGATTCACAAGGATAAGGATGCCGAGCCGACCGAGTTTGAAGAGTCGGTTGCGCAAGCATTTTTCGATTTGGAAAACACTAACCAGGAGCTGAAAAGTGAGCTGAAGGATCTATATATAAATTCAGCAGTTCAAGTTGATGTTGCGGGAAACAGGAAGGCTGTTGTTGTTCATGTACCCTATAGACTGAGGAAGGCTTACCGCAAGATCCATGTTCGTCTTGTGAGGGAGCTTGAGAAGAAGTTCAGCGGAAAGGATGTTATCCTGATTGCCACACGTAGGATAGTGAGGCCTCCAAAGAAAGGTTCCGCTGTTCAACGGCCCCGCACTCGCACACTAACTGCTGTCCACGAGGCTATGTTGGAGGATGTTGTCTCTCCTGCTGAGATTGTCGGAAAGCGCACCAGATATCGTCTTGATGGGTCAAAGATAATGAAGGTGTTTTTGGACCCCAAGGAGCGAAACAACACAGAATACAAGCTGGAGAGCTTCTCTGCAGTTTATCGGAAGCTGTCGGGCAGAGATGTTGTGTTTGAGTATCCTATTACTGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

191

Amino Acids

22.12

Weight (kDa)

9.83

Isoelectric Point (pI)

26.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	7 - 186	6.3e-79	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AciI	CCGC	5 cut(s)	164, 220, 267, 327, 343
AclWI	GGATC	2 cut(s)	135, 220
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	297, 320
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	12, 59, 152, 335
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	4 cut(s)	307, 339, 446, 478
AluBI	AGCT	6 cut(s)	109, 121, 250, 499, 507, 529
AluI	AGCT	6 cut(s)	109, 121, 250, 499, 507, 529
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	135, 220
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	308, 338, 570
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	73, 420
AspS9I	GGNCC	2 cut(s)	339, 466
AvaII	GGWCC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	368
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	574
BfmI	CTRYAG	2 cut(s)	199, 513
BfuI	GTATCC	1 cut(s)	567
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	339, 466
BmiI	GGNNCC	3 cut(s)	325, 341, 468
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 320
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	3 cut(s)	43, 280, 391
BseLI	CCNNNNNNNGG	2 cut(s)	297, 320
BseMII	CTCAG	3 cut(s)	197, 393, 558
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	310, 340, 572
BsiEI	CGRYCG	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	297, 320
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	310, 340, 572
Bsp143I	GATC	2 cut(s)	127, 225
BspACI	CCGC	5 cut(s)	164, 220, 267, 327, 343
BspANI	GGCC	3 cut(s)	310, 340, 572
BspCNI	CTCAG	3 cut(s)	198, 394, 559
BspLI	GGNNCC	3 cut(s)	325, 341, 468
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	2 cut(s)	135, 220
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	127, 225
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	206, 402, 567
BstF5I	GGATG	3 cut(s)	43, 280, 391
BstHHI	GCGC	2 cut(s)	73, 420
BstKTI	GATC	2 cut(s)	130, 228
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	2 cut(s)	127, 225
BstMCI	CGRYCG	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	199, 513
BstX2I	RGATCY	2 cut(s)	127, 225
BstYI	RGATCY	2 cut(s)	127, 225
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	3 cut(s)	310, 340, 572
BtsCI	GGATG	3 cut(s)	43, 280, 391
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	2 cut(s)	73, 420
Cfr13I	GGNCC	2 cut(s)	339, 466
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	2 cut(s)	191, 230
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	206, 402, 567
DpnI	GATC	2 cut(s)	129, 227
DpnII	GATC	2 cut(s)	127, 225
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	2 cut(s)	310, 572
Eco32I	GATATC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	2 cut(s)	194, 233
FaiI	YATR	7 cut(s)	133, 135, 137, 192, 201, 231, 377
FatI	CATG	2 cut(s)	190, 229
FauI	CCCGC	2 cut(s)	157, 350
FokI	GGATG	3 cut(s)	50, 287, 398
FspBI	CTAG	1 cut(s)	574
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	2 cut(s)	72, 419
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	3 cut(s)	310, 340, 572
HhaI	GCGC	2 cut(s)	73, 420
Hin1II	CATG	2 cut(s)	194, 233
Hin6I	GCGC	2 cut(s)	71, 418
HinP1I	GCGC	2 cut(s)	71, 418
HinfI	GANTC	2 cut(s)	22, 62
Hpy166II	GTNNAC	2 cut(s)	6, 367
Hpy188I	TCNGA	2 cut(s)	413, 525
Hpy188III	TCNNGA	2 cut(s)	283, 434
Hpy8I	GTNNAC	2 cut(s)	6, 367
HpyAV	CCTTC	4 cut(s)	118, 169, 205, 448
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	515
HpyF3I	CTNAG	3 cut(s)	206, 402, 567
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	2 cut(s)	194, 233
HspAI	GCGC	2 cut(s)	71, 418
Kzo9I	GATC	2 cut(s)	127, 225
LmnI	GCTCC	3 cut(s)	106, 247, 475
LpnPI	CCDG	7 cut(s)	89, 116, 157, 296, 411, 436, 485
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	574
MaeII	ACGT	1 cut(s)	295
MalI	GATC	2 cut(s)	129, 227
MboI	GATC	2 cut(s)	127, 225
MboII	GAAGA	4 cut(s)	28, 31, 71, 268
MflI	RGATCY	2 cut(s)	127, 225
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	360, 391
MnlI	CCTC	7 cut(s)	201, 237, 300, 321, 364, 376, 562
MroXI	GAANNNNTTC	1 cut(s)	260
MspA1I	CMGCKG	2 cut(s)	267, 329
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	127, 225
NlaIII	CATG	2 cut(s)	194, 233
NlaIV	GGNNCC	3 cut(s)	325, 341, 468
NmeAIII	GCCGAG	1 cut(s)	67
NsbI	TGCGCA	1 cut(s)	72
PceI	AGGCCT	2 cut(s)	310, 572
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	325, 341, 468
PspPI	GGNCC	2 cut(s)	339, 466
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	127, 225
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	127, 225
Sau96I	GGNCC	2 cut(s)	339, 466
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	9 cut(s)	111, 123, 252, 298, 325, 459, 501, 509, 531
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	199, 513
SinI	GGWCC	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	139
SseBI	AGGCCT	2 cut(s)	310, 572
SsiI	CCGC	5 cut(s)	164, 220, 267, 327, 343
SspMI	CTAG	1 cut(s)	574
StuI	AGGCCT	2 cut(s)	310, 572
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	471
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	84
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	179, 467
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.