Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Forward (+)

36719782 .. 36732310

Gene Structure 12529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGCCTCCATTTCCTTAGTGCCCAAGTTGAGCTATTCTGATTGTGGGCAGGCCCTTCAGTCCCTTTTTCCCAACTGCAGATTCAGAAGCACACAACTCTTTCATCATAGAAAATGCCATGGGAGGCGAGCTGGGCTTCCTCGGAATCGTGGGTTTCGTGTCTTTTGCCAATCAAAGGCAGAGGGTGGAAAACTCCCTACAGAAGAAGTGCAGATAAGAAGGTATTCACCATTTCTAGAAAGTGCATTACTAGATGGTAATGGTACCTTGGTAGCTGATGAGTGGCAGGCAGTTCCTGACATTTGGAGAACTTCAGCTGAGAAATATGGGGATCGTGTTGCATTAACAGATCCGTACCATGATCCGCCTTCAAATATGACCTATAAACAGCTGGAACAAGAGATTTTGGATTTTTCTGAAGGCCTAAGAATTGTTGGAGTAATGCCTGTAGAAAAAATTGCACTTTTTGCTGATAATTCTTGTCGTTGGCTTGTTGCAGATCAGGGGTTTGTTTTGGATCCTTGGCAGCACACTATGCTTCTCAAACTTGTAACTTCACGCCTTCTATTGATAATTGGTATAGGAACTAAAGTTGTTGCACTTGCTGTGGATAGTCCTGAATTGTTCAATCGGATTGCAGAACCATTCTGTTCCAAGGTTGTCATGAAATTTGTAATTCTGCTTTGGGGGGAGAAGTCAAGCTTGGCCAGTCATGGAAACATTCCTGTGTTTAACTACAAGGATATTCTAGATTTGGGACGAGAAAGCCGCAAGCGTATGCTTAATTCTAATGATGCACGGAAATACTATACACATGAAGCTATCAATTCAAATGATGTTGCTACACTAGTATATACAAGTGGAACAACAGGCAACCCGAAAGGTGTCATGCTCACTCATCGAAATTTATTACATCAGATAAGAAACCTCTGGGATGTTGTACCTGCTGAAATTGGGGACAGATTTCTTAGTATGCTTCCACCATGGCATGCCTATGAACGAGCTGCTGAGTATTTTACATTTACATATGGAATTGAACAAGTATACACAACTGTGAAGAACTTGAAGACCACTGATGATCTGCGACATTATCAACCAAATTATGTCGTTTCAGTTCCTTTAGTGTACGAGACACTTTACAGGGGGATCCAGAAACAGATTTCTACAAGTTCTAAAGCTCGTAAGCTTATTGCACTTTCATTCCTAAGGATCAGTTTGGCATACATGGAGTTTAAGAGAATTTATGAGGGGACATATTTGACAAGGAACCAGAAGCAGCCTTCATATTATGCTTCACTAGTTGATTGGATCGGGGCAAGGATTGTTGCTGCAATATTATGGCCTTTGCATGTGTTGGGAACAAAACTAGTCTATAGTAAAATTCACTCTGCTATTGGAATATCAAAGGTTATTTCTCTTACTTTTTGGACTGACAAGTTAGGTAGGGGACTAAGCAGAACTTTCCTTGGCTTCCTGCAGGCTGGCATCAGTGGAGGAGGTAGTTTGCCAGCACATATTGATAAATTTTTTGAGGCAATAGGCGTAAAAGTGCAGAATGGATATGGTTTAACAGAGAGTTCTCCTGTTGTTGCTGCTCGGAGACCAAACTGTAATGTTCTTGGTTCAGTTGGGCATCCACTTCGACATACAGAGTTCAAAGTTGTAGACTCTGAAACTGGTGAAGTTCTTCCACCTGGTTCAAGTGGCATTGTAAACGTCAGGGGTCCGCAAGTGATGAAAGGATATTACAAGAATCCAGATGCTACAAGGCAAGTATTAGATAAGGATGGTTGGCTAAGTACTGGAGATATTGGTTGGATTGCTCCTCATCACTCAATAGGTCGAAGCCGTCGTTGTGGAGGTGTTGTTGTCCTTGAAGGACGTGCTAAGGATACTATAGTCCTTTCAACAGGTGAAAACGTTGAACCCGTAGAGCTTGAGGAAGCTGCCATGAGAAGTAGTCTAATTCAACAAATTGTCGTCATTGGCCAGGATGAACGGCGCCTTGGGGCAATAATTGTTCCAAACAAAGAAGAGGCCTTACTTGCAGCGACAAAGACGTTGAGTGTCGATGCTAATACATCTGACCTAAGTCAGGACAAATTGATAGGCTTGCTATATGAAGAACTGAGAAAATGGACTTCAGGGTGTTCATTTCAAATTGGACCAATCTTGATTGTGGACGAGCCCTTTACGATTGATAGTGGTTTGATGACTCCAACTATGAAAATTCGCAGAGACAAAGTTGTGGCACAGTTCAAGGAACAAATAGATGAACTCTACAAGAAAAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

765

Amino Acids

85.61

Weight (kDa)

9.05

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	103 - 169	3.6e-09	AMP-binding enzyme
AMP-binding	PF00501	248 - 583	5.2e-55	AMP-binding enzyme
AMP-binding_C_3	PF23562	631 - 684	1.2e-09	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	952
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	2 cut(s)	263, 2001
AccI	GTMKAC	2 cut(s)	1044, 1665
AciI	CCGC	3 cut(s)	365, 769, 1727
AclI	AACGTT	1 cut(s)	1920
AclWI	GGATC	9 cut(s)	339, 344, 356, 512, 525, 1141, 1154, 1217, 1316
AcoI	YGGCCR	2 cut(s)	705, 1987
AcsI	RAATTY	7 cut(s)	668, 904, 1239, 1380, 1523, 2229, 2290
AcuI	CTGAAG	4 cut(s)	41, 297, 438, 2127
AcyI	GRCGYC	1 cut(s)	2002
AfaI	GTAC	5 cut(s)	265, 356, 942, 1127, 1801
AfiI	CCNNNNNNNGG	2 cut(s)	175, 2095
AhlI	ACTAGT	3 cut(s)	847, 1297, 1366
AjiI	CACGTC	1 cut(s)	1883
AjnI	CCWGG	2 cut(s)	1693, 1989
AjuI	GAANNNNNNNTTGG	6 cut(s)	65, 97, 686, 718, 1989, 2021
AleI	CACNNNNGTG	1 cut(s)	1052
Alw26I	GTCTC	3 cut(s)	1124, 1594, 2232
AlwI	GGATC	9 cut(s)	339, 344, 356, 512, 525, 1141, 1154, 1217, 1316
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	7 cut(s)	3, 51, 421, 705, 1340, 1987, 2037
ApeKI	GCWGC	7 cut(s)	526, 1004, 1276, 1328, 1592, 1946, 2048
ApoI	RAATTY	7 cut(s)	668, 904, 1239, 1380, 1523, 2229, 2290
Asp700I	GAANNNNTTC	2 cut(s)	223, 1686
Asp718I	GGTACC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	2004
AspS9I	GGNCC	3 cut(s)	52, 1724, 2165
AsuHPI	GGTGA	3 cut(s)	219, 1691, 1925
AvaII	GGWCC	2 cut(s)	1724, 2165
AxyI	CCTNAGG	1 cut(s)	1205
BaeGI	GKGCMC	1 cut(s)	24
BaeI	ACNNNNGTAYC	4 cut(s)	255, 288, 1884, 1917
BalI	TGGCCA	2 cut(s)	707, 1989
BamHI	GGATCC	2 cut(s)	517, 1146
BanI	GGYRCC	2 cut(s)	263, 2001
BanII	GRGCYC	1 cut(s)	2190
BarI	GAAGNNNNNNTAC	2 cut(s)	2025, 2057
BbsI	GAAGAC	1 cut(s)	1073
BbvI	GCAGC	7 cut(s)	538, 991, 1288, 1315, 1579, 1933, 2060
BccI	CCATC	2 cut(s)	248, 1781
BceAI	ACGGC	2 cut(s)	1833, 2015
BcgI	CGANNNNNNTGC	2 cut(s)	1622, 1656
BciT130I	CCWGG	2 cut(s)	1695, 1991
BciVI	GTATCC	1 cut(s)	1885
BcoDI	GTCTC	3 cut(s)	1124, 1594, 2232
BcuI	ACTAGT	3 cut(s)	847, 1297, 1366
BfaI	CTAG	6 cut(s)	236, 251, 749, 848, 1298, 1367
BfmI	CTRYAG	6 cut(s)	76, 198, 447, 1372, 1475, 1896
BfoI	RGCGCY	1 cut(s)	2005
BfuAI	ACCTGC	1 cut(s)	952
BfuI	GTATCC	1 cut(s)	1885
BisI	GCNGC	8 cut(s)	527, 769, 1005, 1277, 1329, 1593, 1947, 2049
BlsI	GCNGC	8 cut(s)	528, 770, 1006, 1278, 1330, 1594, 1948, 2050
BmcAI	AGTACT	1 cut(s)	1801
Bme1390I	CCNGG	2 cut(s)	1695, 1991
Bme18I	GGWCC	2 cut(s)	1724, 2165
BmgBI	CACGTC	1 cut(s)	1883
BmgT120I	GGNCC	3 cut(s)	52, 1724, 2165
BmiI	GGNNCC	6 cut(s)	265, 519, 1148, 1268, 1725, 2003
BmrFI	CCNGG	2 cut(s)	1695, 1991
BmsI	GCATC	5 cut(s)	784, 1494, 1642, 1750, 2062
BoxI	GACNNNNGTC	1 cut(s)	2091
BpiI	GAAGAC	1 cut(s)	1073
BpmI	CTGGAG	1 cut(s)	1824
Bpu10I	CCTNAGC	1 cut(s)	1887
BpuEI	CTTGAG	1 cut(s)	1958
BsaHI	GRCGYC	1 cut(s)	2002
BsaI	GGTCTC	1 cut(s)	1594
BsaJI	CCNNGG	8 cut(s)	118, 140, 267, 521, 654, 983, 1465, 2005
BsaXI	ACNNNNNCTCC	2 cut(s)	1851, 1881
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 2095
Bse1I	ACTGG	3 cut(s)	708, 1681, 1807
Bse21I	CCTNAGG	1 cut(s)	1205
BseBI	CCWGG	2 cut(s)	1695, 1991
BseDI	CCNNGG	8 cut(s)	118, 140, 267, 521, 654, 983, 1465, 2005
BseGI	GGATG	4 cut(s)	940, 1633, 1792, 1999
BseLI	CCNNNNNNNGG	2 cut(s)	175, 2095
BseMII	CTCAG	3 cut(s)	309, 999, 2120
BseNI	ACTGG	3 cut(s)	708, 1681, 1807
BseRI	GAGGAG	2 cut(s)	1509, 1815
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	7 cut(s)	538, 991, 1288, 1315, 1579, 1933, 2060
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	2 cut(s)	230, 1571
BshFI	GGCC	7 cut(s)	5, 53, 423, 707, 1342, 1989, 2039
BshNI	GGYRCC	2 cut(s)	263, 2001
BslFI	GGGAC	5 cut(s)	46, 771, 971, 1264, 1461
BslI	CCNNNNNNNGG	2 cut(s)	175, 2095
BsmAI	GTCTC	3 cut(s)	1124, 1594, 2232
BsmFI	GGGAC	5 cut(s)	46, 771, 971, 1264, 1461
BsnI	GGCC	7 cut(s)	5, 53, 423, 707, 1342, 1989, 2039
Bso31I	GGTCTC	1 cut(s)	1594
Bsp1286I	GDGCHC	2 cut(s)	24, 2190
Bsp143I	GATC	9 cut(s)	331, 349, 361, 499, 517, 1078, 1146, 1209, 1308
Bsp19I	CCATGG	2 cut(s)	118, 983
BspACI	CCGC	3 cut(s)	365, 769, 1727
BspANI	GGCC	7 cut(s)	5, 53, 423, 707, 1342, 1989, 2039
BspCNI	CTCAG	3 cut(s)	310, 1000, 2121
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	6 cut(s)	265, 519, 1148, 1268, 1725, 2003
BspMAI	CTGCAG	2 cut(s)	80, 1479
BspMI	ACCTGC	1 cut(s)	952
BspPI	GGATC	9 cut(s)	339, 344, 356, 512, 525, 1141, 1154, 1217, 1316
BspT107I	GGYRCC	2 cut(s)	263, 2001
BspTNI	GGTCTC	1 cut(s)	1594
BsrI	ACTGG	3 cut(s)	708, 1681, 1807
BssECI	CCNNGG	8 cut(s)	118, 140, 267, 521, 654, 983, 1465, 2005
BssMI	GATC	9 cut(s)	331, 349, 361, 499, 517, 1078, 1146, 1209, 1308
BssNAI	GTATAC	1 cut(s)	1045
BssNI	GRCGYC	1 cut(s)	2002
BssT1I	CCWWGG	7 cut(s)	118, 267, 521, 654, 983, 1465, 2005
Bst1107I	GTATAC	1 cut(s)	1045
Bst2UI	CCWGG	2 cut(s)	1695, 1991
Bst4CI	ACNGT	3 cut(s)	1054, 1610, 2256
Bst6I	CTCTTC	1 cut(s)	2028
BstACI	GRCGYC	1 cut(s)	2002
BstAPI	GCANNNNNTGC	2 cut(s)	467, 535
BstC8I	GCNNGC	9 cut(s)	51, 129, 288, 773, 990, 1479, 1483, 1509, 2114
BstDSI	CCRYGG	2 cut(s)	118, 983
BstENI	CCTNNNNNAGG	1 cut(s)	2093
BstF5I	GGATG	4 cut(s)	940, 1633, 1792, 1999
BstH2I	RGCGCY	1 cut(s)	2005
BstHHI	GCGC	1 cut(s)	2004
BstKTI	GATC	9 cut(s)	334, 352, 364, 502, 520, 1081, 1149, 1212, 1311
BstMAI	GTCTC	3 cut(s)	1124, 1594, 2232
BstMBI	GATC	9 cut(s)	331, 349, 361, 499, 517, 1078, 1146, 1209, 1308
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 467, 535, 2045
BstNI	CCWGG	2 cut(s)	1695, 1991
BstNSI	RCATGY	2 cut(s)	992, 1352
BstPAI	GACNNNNGTC	1 cut(s)	2091
BstSCI	CCNGG	2 cut(s)	1693, 1989
BstSFI	CTRYAG	6 cut(s)	76, 198, 447, 1372, 1475, 1896
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	7 cut(s)	538, 991, 1288, 1315, 1579, 1933, 2060
BstV2I	GAAGAC	1 cut(s)	1073
BstX2I	RGATCY	3 cut(s)	349, 517, 1146
BstYI	RGATCY	3 cut(s)	349, 517, 1146
BstZ17I	GTATAC	1 cut(s)	1045
Bsu36I	CCTNAGG	1 cut(s)	1205
BsuI	GTATCC	1 cut(s)	1885
BsuRI	GGCC	7 cut(s)	5, 53, 423, 707, 1342, 1989, 2039
BtgI	CCRYGG	2 cut(s)	118, 983
BtrI	CACGTC	1 cut(s)	1883
BtsCI	GGATG	4 cut(s)	940, 1633, 1792, 1999
BtsIMutI	CAGTG	2 cut(s)	1071, 1495
BveI	ACCTGC	1 cut(s)	952
Cac8I	GCNNGC	9 cut(s)	51, 129, 288, 773, 990, 1479, 1483, 1509, 2114
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	663
CfoI	GCGC	1 cut(s)	2004
Cfr13I	GGNCC	3 cut(s)	52, 1724, 2165
CsiI	ACCWGGT	1 cut(s)	1693
Csp6I	GTAC	5 cut(s)	264, 355, 941, 1126, 1800
CviQI	GTAC	5 cut(s)	264, 355, 941, 1126, 1800
DinI	GGCGCC	1 cut(s)	2003
DpnI	GATC	9 cut(s)	333, 351, 363, 501, 519, 1080, 1148, 1211, 1310
DpnII	GATC	9 cut(s)	331, 349, 361, 499, 517, 1078, 1146, 1209, 1308
EaeI	YGGCCR	2 cut(s)	705, 1987
Eam1104I	CTCTTC	1 cut(s)	2028
EarI	CTCTTC	1 cut(s)	2028
EciI	GGCGGA	1 cut(s)	354
Eco130I	CCWWGG	7 cut(s)	118, 267, 521, 654, 983, 1465, 2005
Eco147I	AGGCCT	2 cut(s)	423, 2039
Eco24I	GRGCYC	1 cut(s)	2190
Eco31I	GGTCTC	1 cut(s)	1594
Eco47I	GGWCC	2 cut(s)	1724, 2165
Eco57I	CTGAAG	4 cut(s)	41, 297, 438, 2127
Eco81I	CCTNAGG	1 cut(s)	1205
EcoNI	CCTNNNNNAGG	1 cut(s)	2093
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	1693, 1989
EcoT14I	CCWWGG	7 cut(s)	118, 267, 521, 654, 983, 1465, 2005
EcoT38I	GRGCYC	1 cut(s)	2190
EgeI	GGCGCC	1 cut(s)	2003
EheI	GGCGCC	1 cut(s)	2003
ErhI	CCWWGG	7 cut(s)	118, 267, 521, 654, 983, 1465, 2005
FalI	AAGNNNNNCTT	4 cut(s)	686, 718, 1444, 1476
FaqI	GGGAC	5 cut(s)	46, 771, 971, 1264, 1461
FauNDI	CATATG	1 cut(s)	1027
FblI	GTMKAC	2 cut(s)	1044, 1665
Fnu4HI	GCNGC	8 cut(s)	527, 769, 1005, 1277, 1329, 1593, 1947, 2049
FokI	GGATG	4 cut(s)	947, 1620, 1799, 2006
FriOI	GRGCYC	1 cut(s)	2190
Fsp4HI	GCNGC	8 cut(s)	527, 769, 1005, 1277, 1329, 1593, 1947, 2049
FspBI	CTAG	6 cut(s)	236, 251, 749, 848, 1298, 1367
GlaI	GCGC	1 cut(s)	2003
GluI	GCNGC	8 cut(s)	527, 769, 1005, 1277, 1329, 1593, 1947, 2049
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	1824
HaeII	RGCGCY	1 cut(s)	2005
HaeIII	GGCC	7 cut(s)	5, 53, 423, 707, 1342, 1989, 2039
HhaI	GCGC	1 cut(s)	2004
Hin1I	GRCGYC	1 cut(s)	2002
Hin6I	GCGC	1 cut(s)	2002
HinP1I	GCGC	1 cut(s)	2002
HindIII	AAGCTT	2 cut(s)	700, 1184
HinfI	GANTC	5 cut(s)	81, 145, 1667, 1753, 2215
HphI	GGTGA	3 cut(s)	219, 1691, 1925
Hpy166II	GTNNAC	5 cut(s)	1045, 1126, 1666, 1714, 2182
Hpy188I	TCNGA	9 cut(s)	40, 86, 144, 418, 633, 918, 1599, 1672, 2086
Hpy188III	TCNNGA	9 cut(s)	236, 296, 617, 664, 749, 1150, 1757, 2096, 2173
Hpy8I	GTNNAC	5 cut(s)	1045, 1126, 1666, 1714, 2182
Hpy99I	CGWCG	1 cut(s)	1854
HpyAV	CCTTC	7 cut(s)	65, 213, 378, 413, 572, 1290, 1871
HpyCH4III	ACNGT	3 cut(s)	1054, 1610, 2256
HpyCH4IV	ACGT	4 cut(s)	1716, 1882, 1920, 2060
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 467, 535, 2045
HpySE526I	ACGT	4 cut(s)	1716, 1882, 1920, 2060
Hsp92I	GRCGYC	1 cut(s)	2002
HspAI	GCGC	1 cut(s)	2002
KasI	GGCGCC	1 cut(s)	2001
KpnI	GGTACC	1 cut(s)	267
Kzo9I	GATC	9 cut(s)	331, 349, 361, 499, 517, 1078, 1146, 1209, 1308
LmnI	GCTCC	1 cut(s)	1828
Lsp1109I	GCAGC	7 cut(s)	538, 991, 1288, 1315, 1579, 1933, 2060
LweI	GCATC	5 cut(s)	784, 1494, 1642, 1750, 2062
MabI	ACCWGGT	1 cut(s)	1693
MaeI	CTAG	6 cut(s)	236, 251, 749, 848, 1298, 1367
MaeII	ACGT	4 cut(s)	1716, 1882, 1920, 2060
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	9 cut(s)	333, 351, 363, 501, 519, 1080, 1148, 1211, 1310
MboI	GATC	9 cut(s)	331, 349, 361, 499, 517, 1078, 1146, 1209, 1308
MboII	GAAGA	6 cut(s)	215, 1069, 1078, 1679, 2045, 2135
MflI	RGATCY	3 cut(s)	349, 517, 1146
MhlI	GDGCHC	2 cut(s)	24, 2190
MlsI	TGGCCA	2 cut(s)	707, 1989
MluNI	TGGCCA	2 cut(s)	707, 1989
Mly113I	GGCGCC	1 cut(s)	2002
MlyI	GAGTC	2 cut(s)	1661, 2209
MmeI	TCCRAC	3 cut(s)	415, 1796, 2243
Mox20I	TGGCCA	2 cut(s)	707, 1989
MroXI	GAANNNNTTC	2 cut(s)	223, 1686
MscI	TGGCCA	2 cut(s)	707, 1989
MseI	TTAA	5 cut(s)	344, 732, 783, 1233, 1568
MslI	CAYNNNNRTG	3 cut(s)	725, 993, 1052
Msp20I	TGGCCA	2 cut(s)	707, 1989
MspA1I	CMGCKG	2 cut(s)	317, 391
MspR9I	CCNGG	2 cut(s)	1695, 1991
MvaI	CCWGG	2 cut(s)	1695, 1991
MwoI	GCNNNNNNNGC	4 cut(s)	133, 467, 535, 2045
NarI	GGCGCC	1 cut(s)	2002
NcoI	CCATGG	2 cut(s)	118, 983
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	9 cut(s)	331, 349, 361, 499, 517, 1078, 1146, 1209, 1308
NlaIV	GGNNCC	6 cut(s)	265, 519, 1148, 1268, 1725, 2003
NspI	RCATGY	2 cut(s)	992, 1352
OliI	CACNNNNGTG	1 cut(s)	1052
PaeI	GCATGC	1 cut(s)	992
PagI	TCATGA	1 cut(s)	663
PceI	AGGCCT	2 cut(s)	423, 2039
PcsI	WCGNNNNNNNCGW	3 cut(s)	154, 1849, 1926
PdmI	GAANNNNTTC	2 cut(s)	223, 1686
PfeI	GAWTC	3 cut(s)	81, 145, 1753
PkrI	GCNGC	8 cut(s)	528, 770, 1006, 1278, 1330, 1594, 1948, 2050
PleI	GAGTC	2 cut(s)	1661, 2209
PluTI	GGCGCC	1 cut(s)	2005
PpsI	GAGTC	2 cut(s)	1661, 2209
PshAI	GACNNNNGTC	1 cut(s)	2091
Psp1406I	AACGTT	1 cut(s)	1920
Psp6I	CCWGG	2 cut(s)	1693, 1989
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	1693, 1989
PspN4I	GGNNCC	6 cut(s)	265, 519, 1148, 1268, 1725, 2003
PspPI	GGNCC	3 cut(s)	52, 1724, 2165
PstI	CTGCAG	2 cut(s)	80, 1479
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	3 cut(s)	349, 517, 1146
PvuII	CAGCTG	2 cut(s)	317, 391
RsaI	GTAC	5 cut(s)	265, 356, 942, 1127, 1801
RsaNI	GTAC	5 cut(s)	264, 355, 941, 1126, 1800
RseI	CAYNNNNRTG	3 cut(s)	725, 993, 1052
SaqAI	TTAA	5 cut(s)	344, 732, 783, 1233, 1568
SatI	GCNGC	8 cut(s)	527, 769, 1005, 1277, 1329, 1593, 1947, 2049
Sau3AI	GATC	9 cut(s)	331, 349, 361, 499, 517, 1078, 1146, 1209, 1308
Sau96I	GGNCC	3 cut(s)	52, 1724, 2165
SbfI	CCTGCAGG	1 cut(s)	1479
ScaI	AGTACT	1 cut(s)	1801
SchI	GAGTC	2 cut(s)	1661, 2209
ScrFI	CCNGG	2 cut(s)	1695, 1991
SdaI	CCTGCAGG	1 cut(s)	1479
SduI	GDGCHC	2 cut(s)	24, 2190
SexAI	ACCWGGT	1 cut(s)	1693
SfaNI	GCATC	5 cut(s)	784, 1494, 1642, 1750, 2062
SfcI	CTRYAG	6 cut(s)	76, 198, 447, 1372, 1475, 1896
SfoI	GGCGCC	1 cut(s)	2003
SinI	GGWCC	2 cut(s)	1724, 2165
SmiMI	CAYNNNNRTG	3 cut(s)	725, 993, 1052
SmlI	CTYRAG	1 cut(s)	1937
SmoI	CTYRAG	1 cut(s)	1937
SpeI	ACTAGT	3 cut(s)	847, 1297, 1366
SphI	GCATGC	1 cut(s)	992
Sse8387I	CCTGCAGG	1 cut(s)	1479
SseBI	AGGCCT	2 cut(s)	423, 2039
SsiI	CCGC	3 cut(s)	365, 769, 1727
SspDI	GGCGCC	1 cut(s)	2001
SspI	AATATT	1 cut(s)	1335
SspMI	CTAG	6 cut(s)	236, 251, 749, 848, 1298, 1367
StuI	AGGCCT	2 cut(s)	423, 2039
StyD4I	CCNGG	2 cut(s)	1693, 1989
StyI	CCWWGG	7 cut(s)	118, 267, 521, 654, 983, 1465, 2005
TaaI	ACNGT	3 cut(s)	1054, 1610, 2256
TaiI	ACGT	4 cut(s)	1719, 1885, 1923, 2063
TaqI	TCGA	4 cut(s)	901, 1642, 1843, 2070
TatI	WGTACW	1 cut(s)	1799
TauI	GCSGC	1 cut(s)	771
TfiI	GAWTC	3 cut(s)	81, 145, 1753
Tru1I	TTAA	5 cut(s)	344, 732, 783, 1233, 1568
Tru9I	TTAA	5 cut(s)	344, 732, 783, 1233, 1568
TscAI	CASTG	2 cut(s)	1078, 1495
TseI	GCWGC	7 cut(s)	526, 1004, 1276, 1328, 1592, 1946, 2048
TspGWI	ACGGA	2 cut(s)	342, 814
TspRI	CASTG	2 cut(s)	1078, 1495
VpaK11BI	GGWCC	2 cut(s)	1724, 2165
XagI	CCTNNNNNAGG	1 cut(s)	2093
XapI	RAATTY	7 cut(s)	668, 904, 1239, 1380, 1523, 2229, 2290
XbaI	TCTAGA	2 cut(s)	235, 748
XceI	RCATGY	2 cut(s)	992, 1352
XmiI	GTMKAC	2 cut(s)	1044, 1665
XmnI	GAANNNNTTC	2 cut(s)	223, 1686
XspI	CTAG	6 cut(s)	236, 251, 749, 848, 1298, 1367
ZrmI	AGTACT	1 cut(s)	1801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.