Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Reverse (-)

18644343 .. 18645640

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGTTTCAGAATTTGGTGTCTTTCAACTTGTCGTTACTTGCAAAACAAGGGTGGAGACCGATTACCAACCCGGATTCCATTGCAGCAAGGGTGTTGAAGGCGAAATATTTTCCGACTTCGGATTTCTTGAGGGCAGAGGTGGGAAGTGATATGTCTTTCATGTGGCGTAGTATCTTGGCTGGAAGAGAGGTGATAGCTAGAGGCTTGCGGTTTCAGATTGGTGAGAGCAACAACGTATCGGTGTGGAACGACCTGTGGATGCTGCTCCCTTATAATTTCAAGCCTTTCTCATCTCCCATGGAAGGGGGTTACCATGTGGCACGTATTATGTCTTCCCACAATACTACCTCATCATCATCATCAGCTGGAACTAGTAGTGACGCTAATGGGATGTGGAGGGCTATTTGGAGGGCTCGTGTCCCTCCTAAGGTGAAAACCTTTGTGTGGAGATTGTTGAGAGGTATACTGCCTACACTGGAGTCTCTTACAAAAGGCTGTGGGGTTGGTATTAACCCTAGGACTCAGTCACGAGTCTTGGTGCAATGGTGGTTTAGGGATGTGGTGGACCTCTTGCCTAGGGCTGATTTATTCTTGATTTGCTTGTGGGTCATCTGGTCTGAGAGTAATAGGATGGTGTGGCGCGGGGGACTTTTTAATCCTTTATGCATGGCAACGTGGGTTGTCCATCATCTGGAGGAGTTTCAGAAGCTGCATGTTGTAGCCACAAACGGACGTAGGAGACCAAAGGCGAGATGGTTATGTCCACCTAGTGGGCGGTTTCAAATCAATGTGGATGTTGCCTTCAAAATGGGTACTGAGCAGAATGGCCTGGGCGTGGTGATAAGAGATAGTGATGGGGTCTGTGTTGCAGCAATGACGAGGAACCTACCTAGTGCTCATTCAGCTTTGCATGTGGAGGCAGAGTCTATAGGGCGGGTTTGTTACTTGCCATACATGAAGGATGGTCGGAAGTTGAGTTGGAAACTGATTGTGCTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

334

Amino Acids

37.78

Weight (kDa)

10.19

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	127 - 165	9e-06	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AccB7I	CCANNNNNTGG	2 cut(s)	694, 773
AccI	GTMKAC	1 cut(s)	466
AccII	CGCG	1 cut(s)	645
AciI	CCGC	4 cut(s)	211, 645, 778, 937
AcsI	RAATTY	1 cut(s)	13
AdeI	CACNNNGTG	1 cut(s)	773
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	7 cut(s)	305, 306, 430, 447, 694, 773, 838
AgsI	TTSAA	5 cut(s)	28, 100, 283, 785, 808
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	5 cut(s)	200, 368, 712, 908, 1001
AluI	AGCT	5 cut(s)	200, 368, 712, 908, 1001
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	3 cut(s)	52, 489, 736
AlwNI	CAGNNNCTG	1 cut(s)	712
AoxI	GGCC	1 cut(s)	829
ApeKI	GCWGC	4 cut(s)	86, 265, 712, 872
ApoI	RAATTY	1 cut(s)	13
AspA2I	CCTAGG	2 cut(s)	518, 578
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	568
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	4 cut(s)	205, 236, 445, 853
AsuNHI	GCTAGC	1 cut(s)	997
AvaII	GGWCC	1 cut(s)	568
AvrII	CCTAGG	2 cut(s)	518, 578
AxyI	CCTNAGG	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	418
BarI	GAAGNNNNNNTAC	2 cut(s)	319, 351
BauI	CACGAG	2 cut(s)	417, 531
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	4 cut(s)	98, 252, 699, 884
BccI	CCATC	5 cut(s)	628, 696, 750, 851, 959
BciT130I	CCWGG	1 cut(s)	833
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	3 cut(s)	52, 489, 736
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	7 cut(s)	201, 375, 519, 579, 771, 894, 998
BfmI	CTRYAG	1 cut(s)	930
BisI	GCNGC	4 cut(s)	87, 266, 713, 873
BlnI	CCTAGG	2 cut(s)	518, 578
BlsI	GCNGC	4 cut(s)	88, 267, 714, 874
Bme1390I	CCNGG	2 cut(s)	74, 833
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	887
BmrFI	CCNGG	2 cut(s)	74, 833
BmsI	GCATC	1 cut(s)	252
BmtI	GCTAGC	1 cut(s)	1001
BpiI	GAAGAC	1 cut(s)	327
BpmI	CTGGAG	2 cut(s)	500, 716
BpuEI	CTTGAG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	326
BsaI	GGTCTC	2 cut(s)	52, 736
BsaJI	CCNNGG	4 cut(s)	300, 518, 578, 832
BsaXI	ACNNNNNCTCC	4 cut(s)	403, 433, 911, 941
Bsc4I	CCNNNNNNNGG	7 cut(s)	305, 306, 430, 447, 694, 773, 838
Bse1I	ACTGG	1 cut(s)	483
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	3 cut(s)	81, 551, 882
BseBI	CCWGG	1 cut(s)	833
BseDI	CCNNGG	4 cut(s)	300, 518, 578, 832
BseGI	GGATG	6 cut(s)	267, 399, 565, 639, 802, 970
BseLI	CCNNNNNNNGG	7 cut(s)	305, 306, 430, 447, 694, 773, 838
BseMI	GCAATG	3 cut(s)	81, 551, 882
BseMII	CTCAG	3 cut(s)	539, 612, 810
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	4 cut(s)	98, 252, 699, 884
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	831
BsiHKAI	GWGCWC	1 cut(s)	901
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	407, 663
BslI	CCNNNNNNNGG	7 cut(s)	305, 306, 430, 447, 694, 773, 838
BsmAI	GTCTC	3 cut(s)	52, 489, 736
BsmFI	GGGAC	2 cut(s)	407, 663
BsnI	GGCC	1 cut(s)	831
Bso31I	GGTCTC	2 cut(s)	52, 736
Bsp1286I	GDGCHC	2 cut(s)	418, 901
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	4 cut(s)	211, 645, 778, 937
BspANI	GGCC	1 cut(s)	831
BspCNI	CTCAG	3 cut(s)	538, 613, 811
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	1 cut(s)	887
BspOI	GCTAGC	1 cut(s)	1001
BspTNI	GGTCTC	2 cut(s)	52, 736
BsrDI	GCAATG	3 cut(s)	81, 551, 882
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	4 cut(s)	300, 518, 578, 832
BssNAI	GTATAC	1 cut(s)	467
BssSI	CACGAG	2 cut(s)	417, 531
BssT1I	CCWWGG	3 cut(s)	300, 518, 578
Bst1107I	GTATAC	1 cut(s)	467
Bst2BI	CACGAG	2 cut(s)	417, 531
Bst2UI	CCWGG	1 cut(s)	833
Bst6I	CTCTTC	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	209, 999
BstDEI	CTNAG	5 cut(s)	429, 525, 621, 819, 1002
BstDSI	CCRYGG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	6 cut(s)	267, 399, 565, 639, 802, 970
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	645
BstMAI	GTCTC	3 cut(s)	52, 489, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNI	CCWGG	1 cut(s)	833
BstNSI	RCATGY	2 cut(s)	719, 917
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	72, 831
BstSFI	CTRYAG	1 cut(s)	930
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	4 cut(s)	98, 252, 699, 884
BstV2I	GAAGAC	1 cut(s)	327
BstZ17I	GTATAC	1 cut(s)	467
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	831
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	6 cut(s)	267, 399, 565, 639, 802, 970
BtsIMutI	CAGTG	1 cut(s)	476
Cac8I	GCNNGC	2 cut(s)	209, 999
CaiI	CAGNNNCTG	1 cut(s)	712
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	568
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	816
CviAII	CATG	7 cut(s)	163, 301, 317, 670, 716, 914, 958
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	5 cut(s)	429, 525, 621, 819, 1002
DraIII	CACNNNGTG	1 cut(s)	773
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco130I	CCWWGG	3 cut(s)	300, 518, 578
Eco24I	GRGCYC	1 cut(s)	418
Eco31I	GGTCTC	2 cut(s)	52, 736
Eco47I	GGWCC	1 cut(s)	568
Eco81I	CCTNAGG	1 cut(s)	429
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	831
EcoT14I	CCWWGG	3 cut(s)	300, 518, 578
EcoT22I	ATGCAT	1 cut(s)	671
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	3 cut(s)	300, 518, 578
FaeI	CATG	7 cut(s)	166, 304, 320, 673, 719, 917, 961
FaqI	GGGAC	2 cut(s)	407, 663
FatI	CATG	7 cut(s)	162, 300, 316, 669, 715, 913, 957
FauI	CCCGC	2 cut(s)	638, 930
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	87, 266, 713, 873
FokI	GGATG	6 cut(s)	274, 406, 572, 646, 809, 977
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	4 cut(s)	87, 266, 713, 873
FspBI	CTAG	7 cut(s)	201, 375, 519, 579, 771, 894, 998
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	4 cut(s)	87, 266, 713, 873
GsuI	CTGGAG	2 cut(s)	500, 716
HaeIII	GGCC	1 cut(s)	831
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	7 cut(s)	166, 304, 320, 673, 719, 917, 961
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	5 cut(s)	77, 482, 523, 534, 926
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	4 cut(s)	205, 236, 445, 853
Hpy166II	GTNNAC	3 cut(s)	467, 568, 767
Hpy188I	TCNGA	7 cut(s)	12, 117, 124, 219, 622, 708, 972
Hpy188III	TCNNGA	4 cut(s)	130, 531, 595, 695
Hpy8I	GTNNAC	3 cut(s)	467, 568, 767
HpyAV	CCTTC	4 cut(s)	94, 299, 814, 955
HpyCH4IV	ACGT	4 cut(s)	237, 325, 677, 736
HpyCH4V	TGCA	7 cut(s)	44, 86, 544, 669, 715, 872, 913
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpyF3I	CTNAG	5 cut(s)	429, 525, 621, 819, 1002
HpySE526I	ACGT	4 cut(s)	237, 325, 677, 736
Hsp92II	CATG	7 cut(s)	166, 304, 320, 673, 719, 917, 961
HspAI	GCGC	1 cut(s)	643
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	9 cut(s)	87, 168, 269, 354, 464, 601, 680, 818, 845
Lsp1109I	GCAGC	4 cut(s)	98, 252, 699, 884
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	7 cut(s)	201, 375, 519, 579, 771, 894, 998
MaeII	ACGT	4 cut(s)	237, 325, 677, 736
MaeIII	GTNAC	5 cut(s)	36, 311, 380, 528, 944
MboII	GAAGA	2 cut(s)	198, 327
MhlI	GDGCHC	2 cut(s)	418, 901
MluCI	AATT	2 cut(s)	13, 277
MlyI	GAGTC	4 cut(s)	491, 517, 543, 935
MmeI	TCCRAC	3 cut(s)	140, 950, 962
Mph1103I	ATGCAT	1 cut(s)	671
MseI	TTAA	2 cut(s)	513, 657
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	74, 833
MvaI	CCWGG	1 cut(s)	833
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	905
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	300
NheI	GCTAGC	1 cut(s)	997
NlaIII	CATG	7 cut(s)	166, 304, 320, 673, 719, 917, 961
NlaIV	GGNNCC	1 cut(s)	887
NmuCI	GTSAC	2 cut(s)	380, 528
NsiI	ATGCAT	1 cut(s)	671
NspI	RCATGY	2 cut(s)	719, 917
PfeI	GAWTC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	526
PflMI	CCANNNNNTGG	2 cut(s)	694, 773
PkrI	GCNGC	4 cut(s)	88, 267, 714, 874
PleI	GAGTC	4 cut(s)	490, 517, 542, 934
PpsI	GAGTC	4 cut(s)	490, 517, 542, 934
Ppu21I	YACGTR	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	831
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	1 cut(s)	887
PspPI	GGNCC	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	712
PsyI	GACNNNGTC	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
SaqAI	TTAA	2 cut(s)	513, 657
SatI	GCNGC	4 cut(s)	87, 266, 713, 873
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	4 cut(s)	491, 517, 543, 935
ScrFI	CCNGG	2 cut(s)	74, 833
SduI	GDGCHC	2 cut(s)	418, 901
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	930
SinI	GGWCC	1 cut(s)	568
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	2 cut(s)	13, 277
SsiI	CCGC	4 cut(s)	211, 645, 778, 937
SspI	AATATT	1 cut(s)	110
SspMI	CTAG	7 cut(s)	201, 375, 519, 579, 771, 894, 998
StyD4I	CCNGG	2 cut(s)	72, 831
StyI	CCWWGG	3 cut(s)	300, 518, 578
TaiI	ACGT	4 cut(s)	240, 328, 680, 739
TaqII	GACCGA	1 cut(s)	76
TasI	AATT	2 cut(s)	13, 277
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	513, 657
Tru9I	TTAA	2 cut(s)	513, 657
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	380, 528
TseI	GCWGC	4 cut(s)	86, 265, 712, 872
Tsp45I	GTSAC	2 cut(s)	380, 528
TspDTI	ATGAA	2 cut(s)	151, 974
TspGWI	ACGGA	1 cut(s)	747
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	526
Van91I	CCANNNNNTGG	2 cut(s)	694, 773
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	2 cut(s)	719, 917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmaJI	CCTAGG	2 cut(s)	518, 578
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	7 cut(s)	201, 375, 519, 579, 771, 894, 998
Zsp2I	ATGCAT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.