Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005849.1

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Reverse (-)

42428 .. 44443

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005849.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgtttgaactagaatccaagggctacagagcaaggcgaagtcgtcgttgtggaggtgttgttgttcttgaaggacgtgcaaaggacaccatagtgctttcaacaggagaaaacgttgaaccagtagagcttgaggaagctgcctcaagaagtagtctaattcaacaaattgttgtcattggccaggatcaacgacggcttggtgcaataattgttccaaacaaagaagaggctttacttgcagctaagaatttgtcccttgtagatattgatgcctctgacctaagcaaggagacaatgaaaagcttgttgtctcaagatttacgaaaatggacttcaagttgttcatttcaaattggacggatcttaattgtagatgaaccctttacgattgataatggtttgatgactctgactatgaaaattcgaagggatagagtcgtggctcgatacaaggaacagatagacaatctgttcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

160

Amino Acids

18.01

Weight (kDa)

8.6

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	2 cut(s)	195, 371
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	250, 423
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	8 cut(s)	8, 71, 102, 119, 164, 339, 353, 478
AjiI	CACGTC	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	183
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	4 cut(s)	130, 140, 245, 306
AluI	AGCT	4 cut(s)	130, 140, 245, 306
Alw26I	GTCTC	2 cut(s)	287, 318
AlwI	GGATC	2 cut(s)	195, 371
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	140, 242
ApoI	RAATTY	2 cut(s)	250, 423
AsuII	TTCGAA	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	183
BarI	GAAGNNNNNNTAC	2 cut(s)	219, 251
BbvI	GCAGC	2 cut(s)	127, 254
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	287, 318
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	2 cut(s)	141, 243
BlsI	GCNGC	2 cut(s)	142, 244
Bme1390I	CCNGG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	3 cut(s)	130, 152, 300
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	127, 254
BshFI	GGCC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	287, 318
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	187, 363
BspANI	GGCC	1 cut(s)	183
BspPI	GGATC	2 cut(s)	195, 371
BspT104I	TTCGAA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	187, 363
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	246, 284
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstKTI	GATC	2 cut(s)	190, 366
BstMAI	GTCTC	2 cut(s)	287, 318
BstMBI	GATC	2 cut(s)	187, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	127, 254
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	77
CviJI	RGCY	9 cut(s)	24, 130, 140, 183, 199, 233, 245, 306, 446
CviKI_1	RGCY	9 cut(s)	24, 130, 140, 183, 199, 233, 245, 306, 446
DdeI	CTNAG	2 cut(s)	246, 284
DpnI	GATC	2 cut(s)	189, 365
DpnII	GATC	2 cut(s)	187, 363
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaiI	YATR	2 cut(s)	92, 419
FaqI	GGGAC	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	141, 243
Fsp4HI	GCNGC	2 cut(s)	141, 243
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	141, 243
HaeIII	GGCC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	3 cut(s)	14, 409, 438
Hpy188I	TCNGA	2 cut(s)	280, 414
Hpy188III	TCNNGA	3 cut(s)	68, 147, 317
Hpy99I	CGWCG	2 cut(s)	48, 198
HpyAV	CCTTC	2 cut(s)	65, 423
HpyCH4IV	ACGT	2 cut(s)	76, 114
HpyCH4V	TGCA	3 cut(s)	80, 206, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	246, 284
HpySE526I	ACGT	2 cut(s)	76, 114
Kzo9I	GATC	2 cut(s)	187, 363
LpnPI	CCDG	4 cut(s)	90, 135, 170, 197
Lsp1109I	GCAGC	2 cut(s)	127, 254
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	76, 114
MalI	GATC	2 cut(s)	189, 365
MboI	GATC	2 cut(s)	187, 363
MboII	GAAGA	1 cut(s)	239
MflI	RGATCY	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	7 cut(s)	159, 168, 210, 250, 354, 369, 423
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	403, 447
MnlI	CCTC	5 cut(s)	47, 127, 154, 223, 286
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	2 cut(s)	187, 363
NspV	TTCGAA	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	142, 244
PleI	GAGTC	2 cut(s)	403, 446
PpsI	GAGTC	2 cut(s)	403, 446
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	2 cut(s)	141, 243
Sau3AI	GATC	2 cut(s)	187, 363
SchI	GAGTC	2 cut(s)	403, 447
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	8 cut(s)	58, 79, 117, 132, 142, 247, 285, 308
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	25
SfuI	TTCGAA	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	3 cut(s)	131, 145, 315
SmoI	CTYRAG	3 cut(s)	131, 145, 315
Sse9I	AATT	7 cut(s)	159, 168, 210, 250, 354, 369, 423
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	2 cut(s)	79, 117
TaqI	TCGA	2 cut(s)	427, 448
TasI	AATT	7 cut(s)	159, 168, 210, 250, 354, 369, 423
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseI	GCWGC	2 cut(s)	140, 242
TspDTI	ATGAA	4 cut(s)	314, 336, 393, 434
TspGWI	ACGGA	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	2 cut(s)	250, 423
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.