Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Reverse (-)

18654367 .. 18659101

Gene Structure 4735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTGGTGGCAAACAGTTTCGATCTTTGGAAGAAAGACGTGTTCTTTCCTGCAGCTGAGGAGGTGCAAGAATCAGCTGATATAATGGAATCCACGTATAGGGCATGGGCTCGAGAGAGGAGAGAAAGTGTAGCACCCGAAGATTTGGATGAACTCTGTAGGGAGCTGCAAACAGCTTTAGGCACTGCCAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGGTTGAGCTATCGCCAACGTGGTGATGATCATACAACAGCTAGACATAGACAATTTATTTCTGCCATTGAAAACCAAATTTCCCATGTTGAAACAGCATTAAGTGCATCGTTCAGTGCAGAAGGAAAGAAACACTTACGCTGGGTACAGCTAGATGAAGAAGAATGTGATGACTTAGCTGCATTTCTCTCTGGGACATCCCATTGTATTCCAAGCGCCAAAAATGATCATGTAGAACTTGGACCTTCTGTGAAAAGCTCTGAGGAAAAGCCTATGAGAAGAAAAGATGTGGACATTAAATCTAATGCTGCCTGCAATTTGGACATTTCTGATGAAATAAAGGGTGTTAAAGATACTGCTATTAATATTAAGGATCCGAATTTTATCATGGACCTAAATGGGAAAGAAATGCCAGGAACTAGGGATGATATCATTTATCATGCTGATAGAACAACTAATACAAGGAAAACTTGGGGCTCACCAAATTGTGAATTGAGGATTATCGTAGCTGATGAAGCTGAGCAGAGAACACAGGTAATGCCAAGCTTAGAGGATACACCCAAAGAAAAAGGGTCCAAACTTGTCTTTTGGAGAAGTTGTGGAGAATTTCATCAAGCAAAGGGAGCAGTTAATTTGTTCAACCAGCTGTTTGGCAGGGTAGGTGCATCTCAAAAGCAATCACAAAGTCCACAGAAGCGATGGCAAGGTCCATTACGCTTGCATTACGGTCGTTCTGTTCAAGTAACCCTCGTTTTAATGCTCACTTTTTTCCTGCTTGTACCATTTGTGTTCTATTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

341

Amino Acids

38.81

Weight (kDa)

5.8

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STX6_10_61_N	PF09177	13 - 105	2.6e-21	Syntaxin 6/10/61, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	590, 603
AcsI	RAATTY	3 cut(s)	300, 601, 827
AfaI	GTAC	2 cut(s)	369, 1002
AfiI	CCNNNNNNNGG	1 cut(s)	99
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	5 cut(s)	293, 314, 862, 962, 1020
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	634
AlwI	GGATC	2 cut(s)	590, 603
Ama87I	CYCGRG	1 cut(s)	111
ApeKI	GCWGC	4 cut(s)	53, 166, 401, 530
ApoI	RAATTY	3 cut(s)	300, 601, 827
AseI	ATTAAT	1 cut(s)	585
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	4 cut(s)	464, 613, 795, 929
AsuHPI	GGTGA	2 cut(s)	257, 693
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	4 cut(s)	464, 613, 795, 929
BamHI	GGATCC	1 cut(s)	595
BanII	GRGCYC	2 cut(s)	112, 701
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	4 cut(s)	65, 153, 388, 517
BccI	CCATC	1 cut(s)	915
BcgI	CGANNNNNNTGC	2 cut(s)	932, 966
BciT130I	CCWGG	1 cut(s)	636
BciVI	GTATCC	1 cut(s)	769
BclI	TGATCA	2 cut(s)	250, 448
BfaI	CTAG	3 cut(s)	264, 374, 642
BfmI	CTRYAG	2 cut(s)	51, 157
BfoI	RGCGCY	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	4 cut(s)	54, 167, 402, 531
BlpI	GCTNAGC	1 cut(s)	741
BlsI	GCNGC	4 cut(s)	55, 168, 403, 532
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	4 cut(s)	464, 613, 795, 929
BmeT110I	CYCGRG	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	4 cut(s)	464, 613, 795, 929
BmiI	GGNNCC	2 cut(s)	597, 796
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	2 cut(s)	338, 896
Bpu10I	CCTNAGC	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	741
BsaAI	YACGTR	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 805, 835
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	636
BseGI	GGATG	3 cut(s)	154, 419, 652
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	48, 474, 732
BseRI	GAGGAG	2 cut(s)	74, 133
BseXI	GCAGC	4 cut(s)	65, 153, 388, 517
BseYI	CCCAGC	1 cut(s)	363
BsgI	GTGCAG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	952
BsiEI	CGRYCG	1 cut(s)	952
BsiHKCI	CYCGRG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	112, 701
Bsp143I	GATC	4 cut(s)	22, 250, 448, 595
Bsp1720I	GCTNAGC	1 cut(s)	741
BspCNI	CTCAG	3 cut(s)	49, 475, 733
BspLI	GGNNCC	2 cut(s)	597, 796
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	2 cut(s)	590, 603
BssMI	GATC	4 cut(s)	22, 250, 448, 595
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	17, 950
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	535, 941
BstDEI	CTNAG	5 cut(s)	57, 397, 483, 741, 769
BstF5I	GGATG	3 cut(s)	154, 419, 652
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	4 cut(s)	25, 253, 451, 598
BstMBI	GATC	4 cut(s)	22, 250, 448, 595
BstMCI	CGRYCG	1 cut(s)	952
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 737, 845
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	2 cut(s)	51, 157
BstV1I	GCAGC	4 cut(s)	65, 153, 388, 517
BstX2I	RGATCY	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	872
BstYI	RGATCY	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	769
BtgZI	GCGATG	1 cut(s)	934
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	154, 419, 652
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 343
Cac8I	GCNNGC	2 cut(s)	535, 941
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	4 cut(s)	464, 613, 795, 929
Csp6I	GTAC	2 cut(s)	368, 1001
CviAII	CATG	5 cut(s)	105, 308, 452, 610, 662
CviQI	GTAC	2 cut(s)	368, 1001
DdeI	CTNAG	5 cut(s)	57, 397, 483, 741, 769
DpnI	GATC	4 cut(s)	24, 252, 450, 597
DpnII	GATC	4 cut(s)	22, 250, 448, 595
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	112, 701
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	4 cut(s)	464, 613, 795, 929
Eco88I	CYCGRG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	112, 701
FaeI	CATG	5 cut(s)	108, 311, 455, 613, 665
FalI	AAGNNNNNCTT	4 cut(s)	341, 373, 676, 708
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	5 cut(s)	104, 307, 451, 609, 661
FbaI	TGATCA	2 cut(s)	250, 448
Fnu4HI	GCNGC	4 cut(s)	54, 167, 402, 531
FokI	GGATG	3 cut(s)	161, 406, 659
FriOI	GRGCYC	2 cut(s)	112, 701
Fsp4HI	GCNGC	4 cut(s)	54, 167, 402, 531
FspBI	CTAG	3 cut(s)	264, 374, 642
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	4 cut(s)	54, 167, 402, 531
GsaI	CCCAGC	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	441
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	5 cut(s)	108, 311, 455, 613, 665
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	766
HinfI	GANTC	2 cut(s)	71, 89
HphI	GGTGA	2 cut(s)	257, 693
Hpy166II	GTNNAC	2 cut(s)	514, 911
Hpy188I	TCNGA	3 cut(s)	484, 553, 600
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	2 cut(s)	514, 911
HpyAV	CCTTC	3 cut(s)	208, 338, 477
HpyCH4III	ACNGT	2 cut(s)	17, 950
HpyCH4IV	ACGT	3 cut(s)	39, 95, 241
HpyCH4V	TGCA	9 cut(s)	53, 67, 169, 329, 341, 404, 537, 887, 943
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 737, 845
HpyF3I	CTNAG	5 cut(s)	57, 397, 483, 741, 769
HpySE526I	ACGT	3 cut(s)	39, 95, 241
Hsp92II	CATG	5 cut(s)	108, 311, 455, 613, 665
HspAI	GCGC	1 cut(s)	438
Ksp22I	TGATCA	2 cut(s)	250, 448
Kzo9I	GATC	4 cut(s)	22, 250, 448, 595
LmnI	GCTCC	2 cut(s)	163, 845
Lsp1109I	GCAGC	4 cut(s)	65, 153, 388, 517
LweI	GCATC	2 cut(s)	338, 896
MaeI	CTAG	3 cut(s)	264, 374, 642
MaeII	ACGT	3 cut(s)	39, 95, 241
MaeIII	GTNAC	1 cut(s)	964
MalI	GATC	4 cut(s)	24, 252, 450, 597
MboI	GATC	4 cut(s)	22, 250, 448, 595
MboII	GAAGA	6 cut(s)	43, 152, 215, 392, 395, 513
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	2 cut(s)	112, 701
MluCI	AATT	8 cut(s)	275, 300, 538, 601, 706, 713, 827, 853
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	52, 55, 111, 478, 711, 766, 980
MseI	TTAA	7 cut(s)	323, 519, 570, 585, 591, 852, 977
MspA1I	CMGCKG	3 cut(s)	56, 77, 868
MspR9I	CCNGG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	3 cut(s)	326, 737, 845
NdeII	GATC	4 cut(s)	22, 250, 448, 595
NlaIII	CATG	5 cut(s)	108, 311, 455, 613, 665
NlaIV	GGNNCC	2 cut(s)	597, 796
PaeR7I	CTCGAG	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	71, 89
PkrI	GCNGC	4 cut(s)	55, 168, 403, 532
Ppu21I	YACGTR	1 cut(s)	96
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	634
PspFI	CCCAGC	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	597, 796
PspPI	GGNCC	4 cut(s)	464, 613, 795, 929
PsrI	GAACNNNNNNTAC	2 cut(s)	664, 696
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	3 cut(s)	56, 77, 868
RsaI	GTAC	2 cut(s)	369, 1002
RsaNI	GTAC	2 cut(s)	368, 1001
SaqAI	TTAA	7 cut(s)	323, 519, 570, 585, 591, 852, 977
SatI	GCNGC	4 cut(s)	54, 167, 402, 531
Sau3AI	GATC	4 cut(s)	22, 250, 448, 595
Sau96I	GGNCC	4 cut(s)	464, 613, 795, 929
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	112, 701
SfaNI	GCATC	2 cut(s)	338, 896
SfcI	CTRYAG	2 cut(s)	51, 157
Sfr274I	CTCGAG	1 cut(s)	111
SinI	GGWCC	4 cut(s)	464, 613, 795, 929
SlaI	CTCGAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	8 cut(s)	275, 300, 538, 601, 706, 713, 827, 853
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	3 cut(s)	264, 374, 642
StyD4I	CCNGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	17, 950
TaiI	ACGT	3 cut(s)	42, 98, 244
TaqI	TCGA	2 cut(s)	21, 112
TasI	AATT	8 cut(s)	275, 300, 538, 601, 706, 713, 827, 853
TfiI	GAWTC	2 cut(s)	71, 89
Tru1I	TTAA	7 cut(s)	323, 519, 570, 585, 591, 852, 977
Tru9I	TTAA	7 cut(s)	323, 519, 570, 585, 591, 852, 977
TscAI	CASTG	2 cut(s)	190, 343
TseI	GCWGC	4 cut(s)	53, 166, 401, 530
TspDTI	ATGAA	5 cut(s)	165, 393, 570, 750, 821
TspRI	CASTG	2 cut(s)	190, 343
VpaK11BI	GGWCC	4 cut(s)	464, 613, 795, 929
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	3 cut(s)	300, 601, 827
XcmI	CCANNNNNNNNNTGG	2 cut(s)	196, 918
XhoI	CTCGAG	1 cut(s)	111
XspI	CTAG	3 cut(s)	264, 374, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.