Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Forward (+)

40883770 .. 40897661

Gene Structure 13892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

ATGGCCACAGCTTTCTTAACGTCCTCCTTCATTTTGGGCAGTTCCTCTGATTCAGGGCACGCCCTTCCATTCCTCTGTTCTAACAAGAAATTGAGAAGCAGACACAGAGCTCGCTACCGAAACCCAACTGGGTTTCATGCGTTTTGCCAATCAAAGACAGAGGAAAAGCAGATACGGAGGTATTCACCTTTCCTAGAAGGTGCTTCTGTGGATGGTACTGCAAGTTTGGTGCCTGATGATTGGCAAGCAGTTCCTGATATCTGGAGATCTTCATCTGAGAAATATGGTGATCTCGTAGCATTGACAGATCCATACCATGACCCACCTTCTAGTTTAACTTATAAACAGCTTGAGAAGGAAATTTTAGATTTTTCTGAAGGTCTAAGAATCGTTGGGGTACAGCCTGAAGAAAAAATTGCACTTTTTGCAGATAACTCATGTCGTTGGCTTGTAGCAGATCAAGGTATAATGGCCACCGGAGCAATCAATGTGGTAAGAGGTTCAAGGTCATCAGTCGAAGAGTTACTACAAATATATCACCACTCAGATAGTGTTGCAATTGCTGTCGACAGTCCTGAACTGTTCAATCGGATTTCAGAAGAATTCTGTTCCAAGGCTGTCATGAAATTTGTTGTTCTTCTTTGGGGGGAGAAATCTAGCTTGGTCAGTGATGGGAAGATTCCCATTTTCAACTACAAAGAGATTCTAGATTTGGGACGAAAGAGTTGTATGAGTATGGCCGATTCTGATGATGGACGAAAGTACTCTATGTATGAAGCAATCAACTCAGATGATATTGCTACAGTTGTATATACAAGCGGAACAAGTGGTAACCCAAAAGGTGTCATGCTCACTCATCGAAATCTGTTGCATCAGATTAAGAACCTCGGGGATATTGTACCTGCTGTAGGCGGGGACAAATTTCTCAGCATGCTTCCACCTTGGCATTGCTATGAACGAGCTTCTGAATATTTTGCTTTTACACGTGGAATTGAACAATTTTACACAACTGTCAGGAAATTGAAGGGAACATATTTGACAAGGAAACAGAAGCAATCTTCACATCTTGTTTCAATAGCAGATTGGTTATGGGCAAGAGTTGTTGCTGCAGTATTATGGCCTTTGCATGTTATGGGACAGAATCTAATATATAGTAAAATCCAATCTGCTATCGGAATATCAAAGGCTGGCATTAGTGGAGGAGGCAATCTACCTTCACATGTTGATAAGTTTTTTGAGGCAATTGGCATTAAATTGCTGAACGGATATGGTTTAACAGAGACTTCTCCCGTTGTTGCTGCTCGACACCCAAGCTGTAATGTTCTTGGTTCAGTTGGGCATCCGATTCGACATACTGAGTTCAAAGTTGTAGATTCTGAAACTGGTGAAGTTCTCCAACCTGGTTTAAGTGGCATTGTAAAAGTTAGGGGCCCACAAGTGATGAAAGGATACTACAAGAATCCAGGGGCTACAGAGCAAGTATTAGATGAGGATGGTTGGCTAAACACTGGAGATATAGGTTGGATTGCTCCTCATCATTCAATAGGGCGAAGTCGTCGTTGTGGAGGTGTTGTTGTCCTTGAAGGACGTGCAAAGGACACCATAGTGCTTTCAACAGGAGAAAACGTTGAACCAGTAGAGCTTGAGGAAGCTGCCTCAAGAAGTAGTCTAATTCAACAAATTGTTGTCATTGGCCAGGATCAACGACGGCTTGGGGCAATAATTGTTCCAAACAAAGAAGAGGCTTTACTTGCAGCTAAGAATTTGTCCCTTGTAGATATTGATGCCTCTGACCTAAGCAAGGAGACAATGAAAAGCTTGTTGTCTCAAGATTTACGAAAATGGACTTCAAGTTGTTCATTTCAAATTGGACGGATCTTAATTGTAGATGAACCCTTTACGATTGATAATGGTTTGATGACTCTGACAATGAAAATTCGAAGGGATAGAGTCGTGGCTCGATACAAGGAACAGATAGACAATCTGTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

664

Amino Acids

73.46

Weight (kDa)

7.27

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	91 - 485	4.2e-67	AMP-binding enzyme
AMP-binding_C_3	PF23562	533 - 663	2.1e-10	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	910
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	819, 912
AclI	AACGTT	1 cut(s)	1626
AclWI	GGATC	3 cut(s)	302, 1707, 1883
AcoI	YGGCCR	4 cut(s)	3, 471, 738, 1693
AcsI	RAATTY	6 cut(s)	360, 602, 626, 920, 1762, 1935
AcuI	CTGAAG	2 cut(s)	396, 426
AcvI	CACGTG	1 cut(s)	986
AfaI	GTAC	4 cut(s)	217, 399, 764, 900
AfiI	CCNNNNNNNGG	2 cut(s)	908, 1801
AflIII	ACRYGT	2 cut(s)	983, 1219
AjiI	CACGTC	1 cut(s)	1589
AjnI	CCWGG	3 cut(s)	1399, 1462, 1695
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AleI	CACNNNNGTG	1 cut(s)	1604
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	3 cut(s)	1274, 1799, 1830
AlwI	GGATC	3 cut(s)	302, 1707, 1883
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	887
AoxI	GGCC	6 cut(s)	3, 471, 738, 1118, 1429, 1693
ApaI	GGGCCC	1 cut(s)	1433
ApeKI	GCWGC	4 cut(s)	1106, 1298, 1652, 1754
ApoI	RAATTY	6 cut(s)	360, 602, 626, 920, 1762, 1935
AspS9I	GGNCC	2 cut(s)	1429, 1430
AsuHPI	GGTGA	4 cut(s)	177, 299, 530, 1397
AsuII	TTCGAA	1 cut(s)	1939
AvaI	CYCGRG	1 cut(s)	887
BaeGI	GKGCMC	2 cut(s)	60, 1433
BaeI	ACNNNNGTAYC	2 cut(s)	164, 197
BalI	TGGCCA	3 cut(s)	5, 473, 1695
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	112, 1433
BarI	GAAGNNNNNNTAC	4 cut(s)	510, 542, 1731, 1763
BbrPI	CACGTG	1 cut(s)	986
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	4 cut(s)	1093, 1285, 1639, 1766
BccI	CCATC	4 cut(s)	206, 665, 746, 1487
BceAI	ACGGC	1 cut(s)	1724
BcgI	CGANNNNNNTGC	2 cut(s)	1328, 1362
BciT130I	CCWGG	3 cut(s)	1401, 1464, 1697
BciVI	GTATCC	1 cut(s)	1442
BcoDI	GTCTC	3 cut(s)	1274, 1799, 1830
BfaI	CTAG	4 cut(s)	194, 330, 657, 707
BfmI	CTRYAG	4 cut(s)	801, 906, 1107, 1470
BfuAI	ACCTGC	1 cut(s)	910
BfuI	GTATCC	1 cut(s)	1442
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	4 cut(s)	1107, 1299, 1653, 1755
BlsI	GCNGC	4 cut(s)	1108, 1300, 1654, 1756
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	3 cut(s)	1401, 1464, 1697
BmeT110I	CYCGRG	1 cut(s)	887
BmgBI	CACGTC	1 cut(s)	1589
BmgT120I	GGNCC	2 cut(s)	1429, 1430
BmiI	GGNNCC	3 cut(s)	231, 1430, 1431
BmrFI	CCNGG	3 cut(s)	1401, 1464, 1697
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	880, 1348, 1774
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	2 cut(s)	283, 1530
Bpu10I	CCTNAGC	1 cut(s)	1796
Bpu14I	TTCGAA	1 cut(s)	1939
BpuEI	CTTGAG	4 cut(s)	371, 1642, 1664, 1812
BsaAI	YACGTR	1 cut(s)	986
BsaBI	GATNNNNATC	1 cut(s)	271
BsaJI	CCNNGG	4 cut(s)	612, 886, 941, 1463
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	4 cut(s)	1557, 1587, 1611, 1641
Bsc4I	CCNNNNNNNGG	2 cut(s)	908, 1801
Bse1I	ACTGG	4 cut(s)	133, 1387, 1513, 1634
Bse3DI	GCAATG	1 cut(s)	946
Bse8I	GATNNNNATC	1 cut(s)	271
BseBI	CCWGG	3 cut(s)	1401, 1464, 1697
BseDI	CCNNGG	4 cut(s)	612, 886, 941, 1463
BseGI	GGATG	3 cut(s)	217, 1339, 1498
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	908, 1801
BseMI	GCAATG	1 cut(s)	946
BseMII	CTCAG	5 cut(s)	267, 558, 801, 940, 1347
BseNI	ACTGG	4 cut(s)	133, 1387, 1513, 1634
BseRI	GAGGAG	2 cut(s)	1215, 1521
BseSI	GKGCMC	2 cut(s)	60, 1433
BseXI	GCAGC	4 cut(s)	1093, 1285, 1639, 1766
BshFI	GGCC	6 cut(s)	5, 473, 740, 1120, 1431, 1695
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	4 cut(s)	729, 929, 1149, 1753
BslI	CCNNNNNNNGG	2 cut(s)	908, 1801
BsmAI	GTCTC	3 cut(s)	1274, 1799, 1830
BsmFI	GGGAC	4 cut(s)	729, 929, 1149, 1753
BsnI	GGCC	6 cut(s)	5, 473, 740, 1120, 1431, 1695
BsoBI	CYCGRG	1 cut(s)	887
Bsp119I	TTCGAA	1 cut(s)	1939
Bsp120I	GGGCCC	1 cut(s)	1429
Bsp1286I	GDGCHC	3 cut(s)	60, 112, 1433
Bsp143I	GATC	6 cut(s)	266, 289, 307, 457, 1699, 1875
BspACI	CCGC	2 cut(s)	819, 912
BspANI	GGCC	6 cut(s)	5, 473, 740, 1120, 1431, 1695
BspCNI	CTCAG	5 cut(s)	268, 557, 800, 939, 1348
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	3 cut(s)	231, 1430, 1431
BspMAI	CTGCAG	1 cut(s)	1111
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	3 cut(s)	302, 1707, 1883
BspT104I	TTCGAA	1 cut(s)	1939
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	946
BsrI	ACTGG	4 cut(s)	133, 1387, 1513, 1634
BssECI	CCNNGG	4 cut(s)	612, 886, 941, 1463
BssMI	GATC	6 cut(s)	266, 289, 307, 457, 1699, 1875
BssT1I	CCWWGG	2 cut(s)	612, 941
Bst2UI	CCWGG	3 cut(s)	1401, 1464, 1697
Bst4CI	ACNGT	4 cut(s)	572, 582, 805, 1012
Bst6I	CTCTTC	2 cut(s)	513, 1734
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	986
BstBI	TTCGAA	1 cut(s)	1939
BstC8I	GCNNGC	5 cut(s)	60, 112, 246, 932, 1189
BstDEI	CTNAG	8 cut(s)	276, 383, 544, 787, 926, 1356, 1758, 1796
BstEII	GGTNACC	1 cut(s)	830
BstENI	CCTNNNNNAGG	2 cut(s)	906, 1799
BstF5I	GGATG	3 cut(s)	217, 1339, 1498
BstKTI	GATC	6 cut(s)	269, 292, 310, 460, 1702, 1878
BstMAI	GTCTC	3 cut(s)	1274, 1799, 1830
BstMBI	GATC	6 cut(s)	266, 289, 307, 457, 1699, 1875
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 479, 1751
BstNI	CCWGG	3 cut(s)	1401, 1464, 1697
BstNSI	RCATGY	3 cut(s)	934, 1130, 1223
BstPI	GGTNACC	1 cut(s)	830
BstSCI	CCNGG	3 cut(s)	1399, 1462, 1695
BstSFI	CTRYAG	4 cut(s)	801, 906, 1107, 1470
BstSLI	GKGCMC	2 cut(s)	60, 1433
BstV1I	GCAGC	4 cut(s)	1093, 1285, 1639, 1766
BstX2I	RGATCY	3 cut(s)	266, 307, 1875
BstYI	RGATCY	3 cut(s)	266, 307, 1875
BsuI	GTATCC	1 cut(s)	1442
BsuRI	GGCC	6 cut(s)	5, 473, 740, 1120, 1431, 1695
BtrI	CACGTC	1 cut(s)	1589
BtsCI	GGATG	3 cut(s)	217, 1339, 1498
BtsIMutI	CAGTG	2 cut(s)	673, 1506
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	5 cut(s)	60, 112, 246, 932, 1189
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	621
Cfr13I	GGNCC	2 cut(s)	1429, 1430
CsiI	ACCWGGT	1 cut(s)	1399
Csp6I	GTAC	4 cut(s)	216, 398, 763, 899
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	8 cut(s)	137, 317, 438, 622, 847, 931, 1127, 1220
CviQI	GTAC	4 cut(s)	216, 398, 763, 899
DdeI	CTNAG	8 cut(s)	276, 383, 544, 787, 926, 1356, 1758, 1796
DpnI	GATC	6 cut(s)	268, 291, 309, 459, 1701, 1877
DpnII	GATC	6 cut(s)	266, 289, 307, 457, 1699, 1875
EaeI	YGGCCR	4 cut(s)	3, 471, 738, 1693
Eam1104I	CTCTTC	2 cut(s)	513, 1734
EarI	CTCTTC	2 cut(s)	513, 1734
Ecl136II	GAGCTC	1 cut(s)	110
Eco130I	CCWWGG	2 cut(s)	612, 941
Eco24I	GRGCYC	2 cut(s)	112, 1433
Eco32I	GATATC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	396, 426
Eco72I	CACGTG	1 cut(s)	986
Eco88I	CYCGRG	1 cut(s)	887
Eco91I	GGTNACC	1 cut(s)	830
EcoICRI	GAGCTC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	2 cut(s)	906, 1799
EcoO109I	RGGNCCY	1 cut(s)	1429
EcoO65I	GGTNACC	1 cut(s)	830
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	3 cut(s)	1399, 1462, 1695
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	612, 941
EcoT38I	GRGCYC	2 cut(s)	112, 1433
ErhI	CCWWGG	2 cut(s)	612, 941
FaeI	CATG	8 cut(s)	140, 320, 441, 625, 850, 934, 1130, 1223
FaqI	GGGAC	4 cut(s)	729, 929, 1149, 1753
FatI	CATG	8 cut(s)	136, 316, 437, 621, 846, 930, 1126, 1219
FauI	CCCGC	1 cut(s)	905
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	4 cut(s)	1107, 1299, 1653, 1755
FokI	GGATG	3 cut(s)	224, 1326, 1505
FriOI	GRGCYC	2 cut(s)	112, 1433
Fsp4HI	GCNGC	4 cut(s)	1107, 1299, 1653, 1755
FspBI	CTAG	4 cut(s)	194, 330, 657, 707
GluI	GCNGC	4 cut(s)	1107, 1299, 1653, 1755
GsuI	CTGGAG	2 cut(s)	283, 1530
HaeIII	GGCC	6 cut(s)	5, 473, 740, 1120, 1431, 1695
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	8 cut(s)	140, 320, 441, 625, 850, 934, 1130, 1223
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	1816
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	4 cut(s)	177, 299, 530, 1397
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188III	TCNNGA	8 cut(s)	254, 262, 575, 622, 707, 1015, 1659, 1829
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	2 cut(s)	1560, 1710
HpyCH4III	ACNGT	4 cut(s)	572, 582, 805, 1012
HpyCH4IV	ACGT	4 cut(s)	20, 985, 1588, 1626
HpyCH4V	TGCA	9 cut(s)	221, 419, 428, 557, 871, 1109, 1126, 1592, 1754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 479, 1751
HpyF3I	CTNAG	8 cut(s)	276, 383, 544, 787, 926, 1356, 1758, 1796
HpySE526I	ACGT	4 cut(s)	20, 985, 1588, 1626
Hsp92II	CATG	8 cut(s)	140, 320, 441, 625, 850, 934, 1130, 1223
Kzo9I	GATC	6 cut(s)	266, 289, 307, 457, 1699, 1875
LmnI	GCTCC	2 cut(s)	479, 1534
Lsp1109I	GCAGC	4 cut(s)	1093, 1285, 1639, 1766
LweI	GCATC	3 cut(s)	880, 1348, 1774
MabI	ACCWGGT	1 cut(s)	1399
MaeI	CTAG	4 cut(s)	194, 330, 657, 707
MaeII	ACGT	4 cut(s)	20, 985, 1588, 1626
MaeIII	GTNAC	2 cut(s)	522, 830
MalI	GATC	6 cut(s)	268, 291, 309, 459, 1701, 1877
MboI	GATC	6 cut(s)	266, 289, 307, 457, 1699, 1875
MboII	GAAGA	8 cut(s)	261, 419, 530, 611, 629, 688, 1050, 1751
MfeI	CAATTG	2 cut(s)	558, 1242
MflI	RGATCY	3 cut(s)	266, 307, 1875
MhlI	GDGCHC	3 cut(s)	60, 112, 1433
MlsI	TGGCCA	3 cut(s)	5, 473, 1695
MluNI	TGGCCA	3 cut(s)	5, 473, 1695
MlyI	GAGTC	2 cut(s)	1915, 1959
MmeI	TCCRAC	2 cut(s)	1420, 1502
Mox20I	TGGCCA	3 cut(s)	5, 473, 1695
MscI	TGGCCA	3 cut(s)	5, 473, 1695
MseI	TTAA	7 cut(s)	17, 335, 879, 1251, 1274, 1406, 1880
MslI	CAYNNNNRTG	2 cut(s)	951, 1604
Msp20I	TGGCCA	3 cut(s)	5, 473, 1695
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	3 cut(s)	1401, 1464, 1697
MunI	CAATTG	2 cut(s)	558, 1242
MvaI	CCWGG	3 cut(s)	1401, 1464, 1697
MwoI	GCNNNNNNNGC	3 cut(s)	425, 479, 1751
NdeII	GATC	6 cut(s)	266, 289, 307, 457, 1699, 1875
NlaIII	CATG	8 cut(s)	140, 320, 441, 625, 850, 934, 1130, 1223
NlaIV	GGNNCC	3 cut(s)	231, 1430, 1431
NspI	RCATGY	3 cut(s)	934, 1130, 1223
NspV	TTCGAA	1 cut(s)	1939
OliI	CACNNNNGTG	1 cut(s)	1604
PaeI	GCATGC	1 cut(s)	934
PagI	TCATGA	1 cut(s)	621
PciI	ACATGT	1 cut(s)	1219
PfeI	GAWTC	9 cut(s)	50, 387, 679, 703, 743, 1141, 1345, 1373, 1459
PkrI	GCNGC	4 cut(s)	1108, 1300, 1654, 1756
PleI	GAGTC	2 cut(s)	1915, 1958
PmaCI	CACGTG	1 cut(s)	986
PmlI	CACGTG	1 cut(s)	986
PpsI	GAGTC	2 cut(s)	1915, 1958
Ppu21I	YACGTR	1 cut(s)	986
PscI	ACATGT	1 cut(s)	1219
PsiI	TTATAA	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	112
Psp1406I	AACGTT	1 cut(s)	1626
Psp6I	CCWGG	3 cut(s)	1399, 1462, 1695
PspCI	CACGTG	1 cut(s)	986
PspEI	GGTNACC	1 cut(s)	830
PspGI	CCWGG	3 cut(s)	1399, 1462, 1695
PspN4I	GGNNCC	3 cut(s)	231, 1430, 1431
PspOMI	GGGCCC	1 cut(s)	1429
PspPI	GGNCC	2 cut(s)	1429, 1430
PstI	CTGCAG	1 cut(s)	1111
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	3 cut(s)	266, 307, 1875
RsaI	GTAC	4 cut(s)	217, 399, 764, 900
RsaNI	GTAC	4 cut(s)	216, 398, 763, 899
RseI	CAYNNNNRTG	2 cut(s)	951, 1604
SacI	GAGCTC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	566
SaqAI	TTAA	7 cut(s)	17, 335, 879, 1251, 1274, 1406, 1880
SatI	GCNGC	4 cut(s)	1107, 1299, 1653, 1755
Sau3AI	GATC	6 cut(s)	266, 289, 307, 457, 1699, 1875
Sau96I	GGNCC	2 cut(s)	1429, 1430
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	2 cut(s)	1915, 1959
ScrFI	CCNGG	3 cut(s)	1401, 1464, 1697
SduI	GDGCHC	3 cut(s)	60, 112, 1433
SexAI	ACCWGGT	1 cut(s)	1399
SfaNI	GCATC	3 cut(s)	880, 1348, 1774
SfcI	CTRYAG	4 cut(s)	801, 906, 1107, 1470
SfuI	TTCGAA	1 cut(s)	1939
SmiMI	CAYNNNNRTG	2 cut(s)	951, 1604
SmlI	CTYRAG	4 cut(s)	350, 1643, 1657, 1827
SmoI	CTYRAG	4 cut(s)	350, 1643, 1657, 1827
SphI	GCATGC	1 cut(s)	934
SsiI	CCGC	2 cut(s)	819, 912
SspI	AATATT	1 cut(s)	971
SspMI	CTAG	4 cut(s)	194, 330, 657, 707
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	3 cut(s)	1399, 1462, 1695
StyI	CCWWGG	2 cut(s)	612, 941
TaaI	ACNGT	4 cut(s)	572, 582, 805, 1012
TaiI	ACGT	4 cut(s)	23, 988, 1591, 1629
TaqI	TCGA	7 cut(s)	516, 567, 859, 1303, 1348, 1939, 1960
TatI	WGTACW	1 cut(s)	762
TfiI	GAWTC	9 cut(s)	50, 387, 679, 703, 743, 1141, 1345, 1373, 1459
Tru1I	TTAA	7 cut(s)	17, 335, 879, 1251, 1274, 1406, 1880
Tru9I	TTAA	7 cut(s)	17, 335, 879, 1251, 1274, 1406, 1880
TscAI	CASTG	2 cut(s)	673, 1513
TseI	GCWGC	4 cut(s)	1106, 1298, 1652, 1754
TspGWI	ACGGA	3 cut(s)	190, 1278, 1888
TspRI	CASTG	2 cut(s)	673, 1513
XagI	CCTNNNNNAGG	2 cut(s)	906, 1799
XapI	RAATTY	6 cut(s)	360, 602, 626, 920, 1762, 1935
XbaI	TCTAGA	1 cut(s)	706
XceI	RCATGY	3 cut(s)	934, 1130, 1223
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	4 cut(s)	194, 330, 657, 707
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.