Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Forward (+)

44820151 .. 44834043

Gene Structure 13893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG178600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGCCACAGCTTTCTTAACGTCCTCCTTCATTTTGGGCAGTTCCTCTGATTCTGGGCACGCCCTTCCATTCCTCTGTTCTAACAAGAAATTGAGAAGCAGACACAGAGCACGCTACCGAAACCCAACTGGGTTTCATGCGTTTTGCCAATCAAAGACAGAGGAAAAGCAGATACGGAGGTATTCACCTTTCCTAGAAGGTGCTTCTGTGGATGGTACTGCAAGTTTGGTGCCTGATGATTGGCAAGCAGTTCCTGATATCTGGAGATCTTCATCTGAGAAATATGGTGATCTCGTAGCATTGACAGATCCATACCATGACCCACCTTCTAGTTTAACTTATAAACAGCTTGAGAAGGAAATTTTAGATTTTTCTGAAGGTCTAAGAATCGTTGGGGTACAGCCTGAAGAAAAAATTGCACTTTTTGCAGATAACTCATGTCGTTGGCTTGTAGCAGATCAAGGTATAATGGCCACCGGAGCAATCAATGTGGTAAGAGGTTCAAGGTCATCAGTCGAAGAGTTACTACAAATATATCACCACTCAGATAGTGTTGCAATTGCTGTCGACAGTCCTGAACTGTTCAATCGGATTTCAGAAGAATTCTGTTCCAAGGCTGTCATGAAATTTGTTGTTCTTCTTTGGGGGGAGAAATCTAGCTTGGTCAGTGATGGGAAGATTCCCATTTTCAACTACAAAGAGATTCTAGATTTGGGACGAAAGAGTTGTAAGAGTATGGCCGATTCTGATGATGGACGAAAGTACTCTATGTATGAAGCAATCAACTCAGATGATATTGCTACAGTTGTATATACAAGCGGAACAAGTGGTAACCCAAAAGGTGTCATGCTCACTCATCGAAATCTGTTGCATCAGATTAAGAACCTCGGGGATATTGTACCTGCTGTAGGCGGGGACAAATTTCTCAGCATGCTTCCACCTTGGCATTGCTATGAACGAGCTTCTGAATATTTTGCTTTTACACGTGGAATTGAACAATTTTACACAACTGTCAGGAAATTGAAGGCTGATTTGCGACAATATCAACCAGATTTTGTTATTTCCGTTCCTTTAGTGTATGAGACACTTTACAGTGGGATTCATAAACAGATTTCTTCCAGCTCTACAGTTCTTAAGCTTATTACACTTGCATTCATACGGATCAGTTTGGCATACATGGAGTTTAAGAGGATCTATGAGGGAACATATTTGACAAGGAAACAGAAGCAATCTTCACATCTTGTTTCAATAGCAGATTGGTTATGGGCAAGAGTTGTTGCTGCAGTATTATGGCCTTTGCATGTTATGGGACAGAATCTAATATATAGTAAAATCCAATCTGTTATCGGAATATCAAAGGCTGGCATTAGTGGAGGAGGCAATCTACCTTCACATGTTGATAAGTTTTTTGAGGCAATTGGCATTAAATTGCTGAACGGATATGGTTTAACAGAGACTTCTCCCGTTGTTGCTGCTCGACACCCAAGCTGTAATGTTCTTGGTTCAGTTGGGCATCCGATTCGACATACTGAGTTCAAAGTTGTAGATTCTGAAACTGGTGAAGTTCTCCAACCTGGTTTAAGTGGCATTGTAAAAGTTAGGGGCCCACAAGTGATGAAAGGATACTACAAGAATCCAGGGGCTACAGAGCAAGTATTAGATGAGGATGGTTGGCTAAACACTGGAGATATAGGTTGGATTGCTCCTCATCATTCAATAGGGCGAAGTCGTCGTTGTGGAGGTGTTGTTGTCCTTGAAGGACGTGCAAAGGACACCATAGTGCTTTCAACAGGAGAAAACGTTGAACCAGTAGAGCTTGAGGAAGCTGCCTCAAGAAGTAGTCTAATTCAACAAATTGTTATCATTGGCCAGGATCAACGACGGCTTGGGGCAATAATTGTTCCAAACAAAGAAGAGGCTTTACTTGCAGCTAAGAATTTGTCCCTTGTAGATATTGATGCCTCTGACCTAAGCAAGGAGACAATGAAAAGCTTGTTGTCTCAAGATTTACGAAAATGGACTTCAAGTTGTTCATTTCAAATTGGACGGATCTTAATTGTAGATGAACCCTTTACGATTGATAATGGTTTGATGACTCTGACAATGAAAATTCGAAGGGATAGAGTCGTGGCTCGATACAAGGAACAGATAGACAATCTGTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

722

Amino Acids

80.24

Weight (kDa)

7.94

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	91 - 543	4.1e-71	AMP-binding enzyme
AMP-binding_C_3	PF23562	591 - 721	3.8e-10	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	910
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	819, 912
AclI	AACGTT	1 cut(s)	1800
AclWI	GGATC	5 cut(s)	302, 1169, 1199, 1881, 2057
AcoI	YGGCCR	4 cut(s)	3, 471, 738, 1867
AcsI	RAATTY	6 cut(s)	360, 602, 626, 920, 1936, 2109
AcuI	CTGAAG	2 cut(s)	396, 426
AcvI	CACGTG	1 cut(s)	986
AfaI	GTAC	4 cut(s)	217, 399, 764, 900
AfiI	CCNNNNNNNGG	2 cut(s)	908, 1975
AflII	CTTAAG	1 cut(s)	1133
AflIII	ACRYGT	2 cut(s)	983, 1393
AjiI	CACGTC	1 cut(s)	1763
AjnI	CCWGG	3 cut(s)	1573, 1636, 1869
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AleI	CACNNNNGTG	1 cut(s)	1778
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	4 cut(s)	1076, 1448, 1973, 2004
AlwI	GGATC	5 cut(s)	302, 1169, 1199, 1881, 2057
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	887
AoxI	GGCC	6 cut(s)	3, 471, 738, 1292, 1603, 1867
ApaI	GGGCCC	1 cut(s)	1607
ApeKI	GCWGC	4 cut(s)	1280, 1472, 1826, 1928
ApoI	RAATTY	6 cut(s)	360, 602, 626, 920, 1936, 2109
AspS9I	GGNCC	2 cut(s)	1603, 1604
AsuHPI	GGTGA	4 cut(s)	177, 299, 530, 1571
AsuII	TTCGAA	1 cut(s)	2113
AvaI	CYCGRG	1 cut(s)	887
BaeGI	GKGCMC	2 cut(s)	60, 1607
BaeI	ACNNNNGTAYC	2 cut(s)	164, 197
BalI	TGGCCA	3 cut(s)	5, 473, 1869
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	1607
BarI	GAAGNNNNNNTAC	4 cut(s)	510, 542, 1905, 1937
BbrPI	CACGTG	1 cut(s)	986
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	4 cut(s)	1267, 1459, 1813, 1940
BccI	CCATC	4 cut(s)	206, 665, 746, 1661
BceAI	ACGGC	1 cut(s)	1898
BcgI	CGANNNNNNTGC	2 cut(s)	1502, 1536
BciT130I	CCWGG	3 cut(s)	1575, 1638, 1871
BciVI	GTATCC	1 cut(s)	1616
BcoDI	GTCTC	4 cut(s)	1076, 1448, 1973, 2004
BfaI	CTAG	4 cut(s)	194, 330, 657, 707
BfmI	CTRYAG	5 cut(s)	801, 906, 1125, 1281, 1644
BfrI	CTTAAG	1 cut(s)	1133
BfuAI	ACCTGC	1 cut(s)	910
BfuI	GTATCC	1 cut(s)	1616
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	4 cut(s)	1281, 1473, 1827, 1929
BlsI	GCNGC	4 cut(s)	1282, 1474, 1828, 1930
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	3 cut(s)	1575, 1638, 1871
BmeT110I	CYCGRG	1 cut(s)	887
BmgBI	CACGTC	1 cut(s)	1763
BmgT120I	GGNCC	2 cut(s)	1603, 1604
BmiI	GGNNCC	3 cut(s)	231, 1604, 1605
BmrFI	CCNGG	3 cut(s)	1575, 1638, 1871
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	880, 1522, 1948
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	2 cut(s)	283, 1704
Bpu10I	CCTNAGC	1 cut(s)	1970
Bpu14I	TTCGAA	1 cut(s)	2113
BpuEI	CTTGAG	4 cut(s)	371, 1816, 1838, 1986
BsaAI	YACGTR	1 cut(s)	986
BsaBI	GATNNNNATC	1 cut(s)	271
BsaJI	CCNNGG	4 cut(s)	612, 886, 941, 1637
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	4 cut(s)	1731, 1761, 1785, 1815
Bsc4I	CCNNNNNNNGG	2 cut(s)	908, 1975
Bse1I	ACTGG	4 cut(s)	133, 1561, 1687, 1808
Bse3DI	GCAATG	1 cut(s)	946
Bse8I	GATNNNNATC	1 cut(s)	271
BseBI	CCWGG	3 cut(s)	1575, 1638, 1871
BseDI	CCNNGG	4 cut(s)	612, 886, 941, 1637
BseGI	GGATG	3 cut(s)	217, 1513, 1672
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	908, 1975
BseMI	GCAATG	1 cut(s)	946
BseMII	CTCAG	5 cut(s)	267, 558, 801, 940, 1521
BseNI	ACTGG	4 cut(s)	133, 1561, 1687, 1808
BseRI	GAGGAG	2 cut(s)	1389, 1695
BseSI	GKGCMC	2 cut(s)	60, 1607
BseXI	GCAGC	4 cut(s)	1267, 1459, 1813, 1940
BshFI	GGCC	6 cut(s)	5, 473, 740, 1294, 1605, 1869
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	4 cut(s)	729, 929, 1323, 1927
BslI	CCNNNNNNNGG	2 cut(s)	908, 1975
BsmAI	GTCTC	4 cut(s)	1076, 1448, 1973, 2004
BsmFI	GGGAC	4 cut(s)	729, 929, 1323, 1927
BsmI	GAATGC	1 cut(s)	1151
BsnI	GGCC	6 cut(s)	5, 473, 740, 1294, 1605, 1869
BsoBI	CYCGRG	1 cut(s)	887
Bsp119I	TTCGAA	1 cut(s)	2113
Bsp120I	GGGCCC	1 cut(s)	1603
Bsp1286I	GDGCHC	3 cut(s)	60, 112, 1607
Bsp143I	GATC	8 cut(s)	266, 289, 307, 457, 1161, 1191, 1873, 2049
BspACI	CCGC	2 cut(s)	819, 912
BspANI	GGCC	6 cut(s)	5, 473, 740, 1294, 1605, 1869
BspCNI	CTCAG	5 cut(s)	268, 557, 800, 939, 1522
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	3 cut(s)	231, 1604, 1605
BspMAI	CTGCAG	1 cut(s)	1285
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	5 cut(s)	302, 1169, 1199, 1881, 2057
BspT104I	TTCGAA	1 cut(s)	2113
BspT107I	GGYRCC	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	1133
BsrDI	GCAATG	1 cut(s)	946
BsrI	ACTGG	4 cut(s)	133, 1561, 1687, 1808
BssECI	CCNNGG	4 cut(s)	612, 886, 941, 1637
BssMI	GATC	8 cut(s)	266, 289, 307, 457, 1161, 1191, 1873, 2049
BssT1I	CCWWGG	2 cut(s)	612, 941
Bst2UI	CCWGG	3 cut(s)	1575, 1638, 1871
Bst4CI	ACNGT	6 cut(s)	572, 582, 805, 1012, 1094, 1129
Bst6I	CTCTTC	2 cut(s)	513, 1908
BstAFI	CTTAAG	1 cut(s)	1133
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	986
BstBI	TTCGAA	1 cut(s)	2113
BstC8I	GCNNGC	5 cut(s)	60, 112, 246, 932, 1363
BstDEI	CTNAG	8 cut(s)	276, 383, 544, 787, 926, 1530, 1932, 1970
BstEII	GGTNACC	1 cut(s)	830
BstENI	CCTNNNNNAGG	2 cut(s)	906, 1973
BstF5I	GGATG	3 cut(s)	217, 1513, 1672
BstKTI	GATC	8 cut(s)	269, 292, 310, 460, 1164, 1194, 1876, 2052
BstMAI	GTCTC	4 cut(s)	1076, 1448, 1973, 2004
BstMBI	GATC	8 cut(s)	266, 289, 307, 457, 1161, 1191, 1873, 2049
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 479, 1925
BstNI	CCWGG	3 cut(s)	1575, 1638, 1871
BstNSI	RCATGY	3 cut(s)	934, 1304, 1397
BstPI	GGTNACC	1 cut(s)	830
BstSCI	CCNGG	3 cut(s)	1573, 1636, 1869
BstSFI	CTRYAG	5 cut(s)	801, 906, 1125, 1281, 1644
BstSLI	GKGCMC	2 cut(s)	60, 1607
BstV1I	GCAGC	4 cut(s)	1267, 1459, 1813, 1940
BstX2I	RGATCY	4 cut(s)	266, 307, 1191, 2049
BstYI	RGATCY	4 cut(s)	266, 307, 1191, 2049
BsuI	GTATCC	1 cut(s)	1616
BsuRI	GGCC	6 cut(s)	5, 473, 740, 1294, 1605, 1869
BtrI	CACGTC	1 cut(s)	1763
BtsCI	GGATG	3 cut(s)	217, 1513, 1672
BtsIMutI	CAGTG	3 cut(s)	673, 1099, 1680
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	5 cut(s)	60, 112, 246, 932, 1363
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	621
Cfr13I	GGNCC	2 cut(s)	1603, 1604
CsiI	ACCWGGT	1 cut(s)	1573
Csp6I	GTAC	4 cut(s)	216, 398, 763, 899
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	9 cut(s)	137, 317, 438, 622, 847, 931, 1177, 1301, 1394
CviQI	GTAC	4 cut(s)	216, 398, 763, 899
DdeI	CTNAG	8 cut(s)	276, 383, 544, 787, 926, 1530, 1932, 1970
DpnI	GATC	8 cut(s)	268, 291, 309, 459, 1163, 1193, 1875, 2051
DpnII	GATC	8 cut(s)	266, 289, 307, 457, 1161, 1191, 1873, 2049
EaeI	YGGCCR	4 cut(s)	3, 471, 738, 1867
Eam1104I	CTCTTC	2 cut(s)	513, 1908
EarI	CTCTTC	2 cut(s)	513, 1908
Eco130I	CCWWGG	2 cut(s)	612, 941
Eco24I	GRGCYC	1 cut(s)	1607
Eco32I	GATATC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	396, 426
Eco72I	CACGTG	1 cut(s)	986
Eco88I	CYCGRG	1 cut(s)	887
Eco91I	GGTNACC	1 cut(s)	830
EcoNI	CCTNNNNNAGG	2 cut(s)	906, 1973
EcoO109I	RGGNCCY	1 cut(s)	1603
EcoO65I	GGTNACC	1 cut(s)	830
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	3 cut(s)	1573, 1636, 1869
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	612, 941
EcoT38I	GRGCYC	1 cut(s)	1607
ErhI	CCWWGG	2 cut(s)	612, 941
FaeI	CATG	9 cut(s)	140, 320, 441, 625, 850, 934, 1180, 1304, 1397
FaqI	GGGAC	4 cut(s)	729, 929, 1323, 1927
FatI	CATG	9 cut(s)	136, 316, 437, 621, 846, 930, 1176, 1300, 1393
FauI	CCCGC	1 cut(s)	905
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	4 cut(s)	1281, 1473, 1827, 1929
FokI	GGATG	3 cut(s)	224, 1500, 1679
FriOI	GRGCYC	1 cut(s)	1607
Fsp4HI	GCNGC	4 cut(s)	1281, 1473, 1827, 1929
FspBI	CTAG	4 cut(s)	194, 330, 657, 707
GluI	GCNGC	4 cut(s)	1281, 1473, 1827, 1929
GsuI	CTGGAG	2 cut(s)	283, 1704
HaeIII	GGCC	6 cut(s)	5, 473, 740, 1294, 1605, 1869
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	9 cut(s)	140, 320, 441, 625, 850, 934, 1180, 1304, 1397
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	2 cut(s)	1136, 1990
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	4 cut(s)	177, 299, 530, 1571
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188III	TCNNGA	8 cut(s)	254, 262, 575, 622, 707, 1015, 1833, 2003
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	2 cut(s)	1734, 1884
HpyCH4III	ACNGT	6 cut(s)	572, 582, 805, 1012, 1094, 1129
HpyCH4IV	ACGT	4 cut(s)	20, 985, 1762, 1800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 479, 1925
HpyF3I	CTNAG	8 cut(s)	276, 383, 544, 787, 926, 1530, 1932, 1970
HpySE526I	ACGT	4 cut(s)	20, 985, 1762, 1800
Hsp92II	CATG	9 cut(s)	140, 320, 441, 625, 850, 934, 1180, 1304, 1397
Kzo9I	GATC	8 cut(s)	266, 289, 307, 457, 1161, 1191, 1873, 2049
LmnI	GCTCC	2 cut(s)	479, 1708
Lsp1109I	GCAGC	4 cut(s)	1267, 1459, 1813, 1940
LweI	GCATC	3 cut(s)	880, 1522, 1948
MabI	ACCWGGT	1 cut(s)	1573
MaeI	CTAG	4 cut(s)	194, 330, 657, 707
MaeII	ACGT	4 cut(s)	20, 985, 1762, 1800
MaeIII	GTNAC	2 cut(s)	522, 830
MalI	GATC	8 cut(s)	268, 291, 309, 459, 1163, 1193, 1875, 2051
MboI	GATC	8 cut(s)	266, 289, 307, 457, 1161, 1191, 1873, 2049
MboII	GAAGA	9 cut(s)	261, 419, 530, 611, 629, 688, 1107, 1224, 1925
MfeI	CAATTG	2 cut(s)	558, 1416
MflI	RGATCY	4 cut(s)	266, 307, 1191, 2049
MhlI	GDGCHC	3 cut(s)	60, 112, 1607
MlsI	TGGCCA	3 cut(s)	5, 473, 1869
MluNI	TGGCCA	3 cut(s)	5, 473, 1869
MlyI	GAGTC	2 cut(s)	2089, 2133
MmeI	TCCRAC	2 cut(s)	1594, 1676
Mox20I	TGGCCA	3 cut(s)	5, 473, 1869
MscI	TGGCCA	3 cut(s)	5, 473, 1869
MseI	TTAA	9 cut(s)	17, 335, 879, 1134, 1185, 1425, 1448, 1580, 2054
MslI	CAYNNNNRTG	2 cut(s)	951, 1778
Msp20I	TGGCCA	3 cut(s)	5, 473, 1869
MspCI	CTTAAG	1 cut(s)	1133
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	3 cut(s)	1575, 1638, 1871
MunI	CAATTG	2 cut(s)	558, 1416
Mva1269I	GAATGC	1 cut(s)	1151
MvaI	CCWGG	3 cut(s)	1575, 1638, 1871
MwoI	GCNNNNNNNGC	3 cut(s)	425, 479, 1925
NdeII	GATC	8 cut(s)	266, 289, 307, 457, 1161, 1191, 1873, 2049
NlaIII	CATG	9 cut(s)	140, 320, 441, 625, 850, 934, 1180, 1304, 1397
NlaIV	GGNNCC	3 cut(s)	231, 1604, 1605
NspI	RCATGY	3 cut(s)	934, 1304, 1397
NspV	TTCGAA	1 cut(s)	2113
OliI	CACNNNNGTG	1 cut(s)	1778
PaeI	GCATGC	1 cut(s)	934
PagI	TCATGA	1 cut(s)	621
PciI	ACATGT	1 cut(s)	1393
PctI	GAATGC	1 cut(s)	1151
PkrI	GCNGC	4 cut(s)	1282, 1474, 1828, 1930
PleI	GAGTC	2 cut(s)	2089, 2132
PmaCI	CACGTG	1 cut(s)	986
PmlI	CACGTG	1 cut(s)	986
PpsI	GAGTC	2 cut(s)	2089, 2132
Ppu21I	YACGTR	1 cut(s)	986
PscI	ACATGT	1 cut(s)	1393
PsiI	TTATAA	1 cut(s)	342
Psp1406I	AACGTT	1 cut(s)	1800
Psp6I	CCWGG	3 cut(s)	1573, 1636, 1869
PspCI	CACGTG	1 cut(s)	986
PspEI	GGTNACC	1 cut(s)	830
PspGI	CCWGG	3 cut(s)	1573, 1636, 1869
PspN4I	GGNNCC	3 cut(s)	231, 1604, 1605
PspOMI	GGGCCC	1 cut(s)	1603
PspPI	GGNCC	2 cut(s)	1603, 1604
PstI	CTGCAG	1 cut(s)	1285
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	4 cut(s)	266, 307, 1191, 2049
RsaI	GTAC	4 cut(s)	217, 399, 764, 900
RsaNI	GTAC	4 cut(s)	216, 398, 763, 899
RseI	CAYNNNNRTG	2 cut(s)	951, 1778
SalI	GTCGAC	1 cut(s)	566
SaqAI	TTAA	9 cut(s)	17, 335, 879, 1134, 1185, 1425, 1448, 1580, 2054
SatI	GCNGC	4 cut(s)	1281, 1473, 1827, 1929
Sau3AI	GATC	8 cut(s)	266, 289, 307, 457, 1161, 1191, 1873, 2049
Sau96I	GGNCC	2 cut(s)	1603, 1604
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	2 cut(s)	2089, 2133
ScrFI	CCNGG	3 cut(s)	1575, 1638, 1871
SduI	GDGCHC	3 cut(s)	60, 112, 1607
SexAI	ACCWGGT	1 cut(s)	1573
SfaNI	GCATC	3 cut(s)	880, 1522, 1948
SfcI	CTRYAG	5 cut(s)	801, 906, 1125, 1281, 1644
SfuI	TTCGAA	1 cut(s)	2113
SmiMI	CAYNNNNRTG	2 cut(s)	951, 1778
SmlI	CTYRAG	5 cut(s)	350, 1133, 1817, 1831, 2001
SmoI	CTYRAG	5 cut(s)	350, 1133, 1817, 1831, 2001
SphI	GCATGC	1 cut(s)	934
SsiI	CCGC	2 cut(s)	819, 912
SspI	AATATT	1 cut(s)	971
SspMI	CTAG	4 cut(s)	194, 330, 657, 707
StyD4I	CCNGG	3 cut(s)	1573, 1636, 1869
StyI	CCWWGG	2 cut(s)	612, 941
TaaI	ACNGT	6 cut(s)	572, 582, 805, 1012, 1094, 1129
TaiI	ACGT	4 cut(s)	23, 988, 1765, 1803
TaqI	TCGA	7 cut(s)	516, 567, 859, 1477, 1522, 2113, 2134
TatI	WGTACW	1 cut(s)	762
Tru1I	TTAA	9 cut(s)	17, 335, 879, 1134, 1185, 1425, 1448, 1580, 2054
Tru9I	TTAA	9 cut(s)	17, 335, 879, 1134, 1185, 1425, 1448, 1580, 2054
TscAI	CASTG	3 cut(s)	673, 1099, 1687
TseI	GCWGC	4 cut(s)	1280, 1472, 1826, 1928
TspGWI	ACGGA	5 cut(s)	190, 1054, 1174, 1452, 2062
TspRI	CASTG	3 cut(s)	673, 1099, 1687
Vha464I	CTTAAG	1 cut(s)	1133
XagI	CCTNNNNNAGG	2 cut(s)	906, 1973
XapI	RAATTY	6 cut(s)	360, 602, 626, 920, 1936, 2109
XbaI	TCTAGA	1 cut(s)	706
XceI	RCATGY	3 cut(s)	934, 1304, 1397
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	4 cut(s)	194, 330, 657, 707
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.