Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001017

Physical Location & Seq

Genomic Coordinates Forward (+)

31564183 .. 31567764

Gene Structure 3582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG177900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGACAGAATCTAATATATAGTAAAATCCAATCTGCTATCGGAATATCAAAGGCTGGCATTAGTGGAGGAGGCAATCTACCTTCACATGTTGATAAGTTTTTTGAGGCAATTGGCATTAAATTGCTAAACGGATATGGTTTAACAGAGACTTCTCCCGTTGTTGCTGCTCGACACCCAAGCTGTAATGTTCTTGGTTCAGTTGGGCATCCGATTCGACATACTGAGTTCAAGGTTGTAGATTCTGAAACTGGTGAAGTTCTCCTACCTGGTTTAAGTGGCATTGTAAAAGTTAGGGGCCCACAAGTAATGAAAGGATACTACAAGAATCCAAGGGCTACAGAGCAAGTATTAGATGAGGATGGTTGGCTAAACACTGGAGATATAGGTTGGATTGCTCCTCATCATTCAATAGGGCGAAGTCGTCGTTGTGGAGGTGTTGTTGTCCTTGAAGGACGTGCAAAGGACACCATAGTGCTTTCAACAGGAGAAAACGTTGAACCAGTAGAGCTTGAGGAAGCTGCCTCAAGAAGTAGTCTAATTCAACAAATTGTTGTCATTGGCCAGGATCAACGACGGCTTGGGGCAATAATTGTTCCAAACAAAGAAGAGGCTTTACTTGCAGCTAAGAATTTGTCCCTTGTAGATATTGATGCCTCTGACCTAAGCAAGGAGACAATGAAAAGCTTGTTGTCTCAAGATTTACGAAAATGGACTTCAAGTTGTTCATTTCAAATTGGACGGATCTTAATTGTAGATGAACCCTTTACGATTGATAATGGTTTGATGACTCTGACTATGAAAATTCGAAGGGATAGAGTCGTGGCTCGATACAAGGAACAGATAGACAATCTGCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

287

Amino Acids

31.26

Weight (kDa)

7.73

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	19 - 108	2e-22	AMP-binding enzyme
AMP-binding_C_3	PF23562	156 - 211	8.7e-11	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23790 AT4G14070
fragaria_vesca	FvH4_4g13140 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151 FvH4_4g13151
malus_domestica	MD04G1018700.v1.1 MD04G1018900.v1.1
prunus_persica	Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G167500_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G168200_v2.0.a1 Prupe.1G187500_v2.0.a1
pyrus_communis	pycom04g01500 pycom04g01510
rosa_chinensis	RchiOBHm_Chr4g0412911 RchiOBHm_Chr4g0413021 RchiOBHm_Chr4g0413231
rosa_laevigata	RLG00000008230 RLG00000008244 RLG00000008246
rosa_multiflora	Rmu_sc0000717.1_g000026 Rmu_sc0005849.1_g000011 Rmu_sc0021560.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357150 Rroxscaffold_5G00357210
rosa_rugosa	Rorug04G0117500 Rorug04G0117600 Rorug04G0117700 Rorug04G0117800 Rorug04G0117900 Rorug04G0118000 Rorug04G0118000 Rorug04G0118100 Rorug04G0118100 Rorug04G0118600
rosa_samantha	Rh4AG176400 Rh4AG177100 Rh4AG178600 Rh4BG177000 Rh4BG177900 Rh4CG187400 Rh4CG188100 Rh4CG189200 Rh4DG173700 Rh4DG173900
rosa_wichuraiana	Rw4G014810 Rw4G014820 Rw4G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	2 cut(s)	576, 752
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	631, 804
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	8 cut(s)	232, 411, 452, 483, 500, 545, 720, 734
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	268, 564
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	5 cut(s)	183, 511, 521, 626, 687
AluI	AGCT	5 cut(s)	183, 511, 521, 626, 687
Alw26I	GTCTC	3 cut(s)	143, 668, 699
AlwI	GGATC	2 cut(s)	576, 752
AoxI	GGCC	2 cut(s)	298, 562
ApaI	GGGCCC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	167, 521, 623
ApoI	RAATTY	2 cut(s)	631, 804
AspS9I	GGNCC	2 cut(s)	298, 299
AsuHPI	GGTGA	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	808
BaeGI	GKGCMC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	4 cut(s)	249, 281, 600, 632
BbvI	GCAGC	3 cut(s)	154, 508, 635
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	593
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	270, 566
BciVI	GTATCC	1 cut(s)	311
BcoDI	GTCTC	3 cut(s)	143, 668, 699
BfmI	CTRYAG	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	311
BisI	GCNGC	3 cut(s)	168, 522, 624
BlsI	GCNGC	3 cut(s)	169, 523, 625
Bme1390I	CCNGG	2 cut(s)	270, 566
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	298, 299
BmiI	GGNNCC	2 cut(s)	299, 300
BmrFI	CCNGG	2 cut(s)	270, 566
BmsI	GCATC	2 cut(s)	217, 643
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	665
Bpu14I	TTCGAA	1 cut(s)	808
BpuEI	CTTGAG	4 cut(s)	511, 533, 681, 842
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	4 cut(s)	426, 456, 480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	3 cut(s)	256, 382, 503
BseBI	CCWGG	2 cut(s)	270, 566
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	208, 367
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	3 cut(s)	256, 382, 503
BseRI	GAGGAG	2 cut(s)	84, 390
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	154, 508, 635
BshFI	GGCC	2 cut(s)	300, 564
BslFI	GGGAC	2 cut(s)	18, 622
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	3 cut(s)	143, 668, 699
BsmFI	GGGAC	2 cut(s)	18, 622
BsnI	GGCC	2 cut(s)	300, 564
Bsp119I	TTCGAA	1 cut(s)	808
Bsp120I	GGGCCC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	568, 744
BspANI	GGCC	2 cut(s)	300, 564
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	299, 300
BspPI	GGATC	2 cut(s)	576, 752
BspT104I	TTCGAA	1 cut(s)	808
BsrI	ACTGG	3 cut(s)	256, 382, 503
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	2 cut(s)	568, 744
BssT1I	CCWWGG	1 cut(s)	332
Bst2UI	CCWGG	2 cut(s)	270, 566
Bst6I	CTCTTC	1 cut(s)	603
BstBI	TTCGAA	1 cut(s)	808
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	225, 627, 665
BstENI	CCTNNNNNAGG	1 cut(s)	668
BstF5I	GGATG	2 cut(s)	208, 367
BstKTI	GATC	2 cut(s)	571, 747
BstMAI	GTCTC	3 cut(s)	143, 668, 699
BstMBI	GATC	2 cut(s)	568, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	2 cut(s)	270, 566
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	268, 564
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	154, 508, 635
BstX2I	RGATCY	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	300, 564
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	208, 367
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	298, 299
CsiI	ACCWGGT	1 cut(s)	268
CviAII	CATG	1 cut(s)	89
DdeI	CTNAG	3 cut(s)	225, 627, 665
DpnI	GATC	2 cut(s)	570, 746
DpnII	GATC	2 cut(s)	568, 744
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	268, 564
EcoT14I	CCWWGG	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	1 cut(s)	92
FaiI	YATR	8 cut(s)	19, 21, 90, 138, 222, 386, 473, 800
FaqI	GGGAC	2 cut(s)	18, 622
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	168, 522, 624
FokI	GGATG	2 cut(s)	195, 374
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	168, 522, 624
GluI	GCNGC	3 cut(s)	168, 522, 624
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	300, 564
Hin1II	CATG	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	6 cut(s)	10, 214, 242, 328, 790, 819
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	5 cut(s)	44, 213, 247, 661, 795
Hpy188III	TCNNGA	2 cut(s)	528, 698
Hpy99I	CGWCG	2 cut(s)	429, 579
HpyAV	CCTTC	3 cut(s)	93, 446, 804
HpyCH4IV	ACGT	2 cut(s)	457, 495
HpyCH4V	TGCA	2 cut(s)	461, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	3 cut(s)	225, 627, 665
HpySE526I	ACGT	2 cut(s)	457, 495
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	568, 744
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	9 cut(s)	42, 237, 255, 282, 363, 471, 516, 551, 578
Lsp1109I	GCAGC	3 cut(s)	154, 508, 635
LweI	GCATC	2 cut(s)	217, 643
MabI	ACCWGGT	1 cut(s)	268
MaeII	ACGT	2 cut(s)	457, 495
MalI	GATC	2 cut(s)	570, 746
MboI	GATC	2 cut(s)	568, 744
MboII	GAAGA	1 cut(s)	620
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	744
MhlI	GDGCHC	1 cut(s)	302
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	9 cut(s)	111, 122, 540, 549, 591, 631, 735, 750, 804
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	2 cut(s)	784, 828
MmeI	TCCRAC	1 cut(s)	371
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	4 cut(s)	120, 143, 275, 749
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	270, 566
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	2 cut(s)	270, 566
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	2 cut(s)	568, 744
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	299, 300
NspI	RCATGY	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	808
OliI	CACNNNNGTG	1 cut(s)	473
PciI	ACATGT	1 cut(s)	88
PfeI	GAWTC	4 cut(s)	10, 214, 242, 328
PkrI	GCNGC	3 cut(s)	169, 523, 625
PleI	GAGTC	2 cut(s)	784, 827
PpsI	GAGTC	2 cut(s)	784, 827
PscI	ACATGT	1 cut(s)	88
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	268, 564
PspGI	CCWGG	2 cut(s)	268, 564
PspN4I	GGNNCC	2 cut(s)	299, 300
PspOMI	GGGCCC	1 cut(s)	298
PspPI	GGNCC	2 cut(s)	298, 299
PsuI	RGATCY	1 cut(s)	744
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	4 cut(s)	120, 143, 275, 749
SatI	GCNGC	3 cut(s)	168, 522, 624
Sau3AI	GATC	2 cut(s)	568, 744
Sau96I	GGNCC	2 cut(s)	298, 299
SchI	GAGTC	2 cut(s)	784, 828
ScrFI	CCNGG	2 cut(s)	270, 566
SduI	GDGCHC	1 cut(s)	302
SexAI	ACCWGGT	1 cut(s)	268
SfaNI	GCATC	2 cut(s)	217, 643
SfcI	CTRYAG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	4 cut(s)	512, 526, 696, 857
SmoI	CTYRAG	4 cut(s)	512, 526, 696, 857
Sse9I	AATT	9 cut(s)	111, 122, 540, 549, 591, 631, 735, 750, 804
StyD4I	CCNGG	2 cut(s)	268, 564
StyI	CCWWGG	1 cut(s)	332
TaiI	ACGT	2 cut(s)	460, 498
TaqI	TCGA	4 cut(s)	172, 217, 808, 829
TasI	AATT	9 cut(s)	111, 122, 540, 549, 591, 631, 735, 750, 804
TfiI	GAWTC	4 cut(s)	10, 214, 242, 328
Tru1I	TTAA	4 cut(s)	120, 143, 275, 749
Tru9I	TTAA	4 cut(s)	120, 143, 275, 749
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	3 cut(s)	167, 521, 623
TspDTI	ATGAA	5 cut(s)	326, 695, 717, 774, 815
TspGWI	ACGGA	2 cut(s)	147, 757
TspRI	CASTG	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	668
XapI	RAATTY	2 cut(s)	631, 804
XceI	RCATGY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.