Prupe.3G300800_v2.0.a1

Ankyrin repeats (many copies)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
26557879 .. 26561316
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G300800.2

Sequence Viewer

Length: 2073 bp
ATGCCTCCTACATATTTTCCTCTTCGATGGGAGAGTACAGGGGACCAATGGTGGTATGCTTCTCCGATTGATTGGGCAGCTGCTAATGGTCACTATGACTTGGTTCGAGAGCTCCTCCGCATTGACAGCAACCACCTCATCAAGCTCACATCTTTACGCCGAATTCGTCGTCTTGAGACAGTATGGGATGATGAGGCACAGTTTGATGATGTAGCCAAGTGCCGTTCAAACGTTGCTCGAAAGCTTTTCTATGAGTGTGAATCCAAGAAAGGAAAGAACTCTCTCATCAGGGCTGGTTATGGTGGATGGCTTATGTACACAGCTGCCTCAGCTGGACAGCTTGGTTTTGTTCAAGAACTACTTGAAAGAAACCCTCTGCTTGTTTTTGGGGAAGGAGAATTTGGGATTACTGATATACTGTATGCTGCTGCTAGGAGTAAGAACACTGAGGTTTTCAGGCTGCTCTTTGACTTTGCAGTTTCGCCAAGATTTATGACAGGCAAAGGTGGAGAGCTGGAAGAACACATTGGGGACATTCCTTCTGTATACAAACGGGAGATGGTTAACAGGGCAGTTCATGCTGCTGCCAGAGGAGGAAATTTGAGCATTTTGAAGGAGCTTCTTTCTGATTGCTCAGATGTTTTGACTTACAGGGATATTCAGGGATCAACTATCCTCCATGCAGCAGCTGGGAAAGGGCGGGTAGAGGTTGTGAAGTACCTTTTAGCATCTTATGATATCATAAACTCCAATGACCATCAGGGCAACACAGCATTGCATGTGGCTGCTTCAAGGGGTCAATTAGCTGCAGCTGAAGCTCTTATATCTGCTTCTCCGTCGTCCATTTCCATGAGAAACAACTCTGGAGAAACGTTTCTCCACAAGGCTGTATCTGGTTTTCAAAGTCCTGCCTTCCGAAGATTGGACCGACAAATTCAGCTTCTGAAGCAATTGGTATGTGGGAAAGCTTTCAACATTGAAGACATCATCAATGCCAAAAACAACGAAGGACGGACTGCCCTTCACACGGCAATCATTGGGAATGTTCATTCTGACTTGGTGCAACTGCTGATGATTGCTCAATCAATTGATGTCAATGCCCGTGATATTGATGGCATGACAGCACTTGATTACCTCAGACAATGGCCCCGTTCTGCATCGTCTGAGATACTAATTAGGCAGTTGATTTCAGCAGGGGGGATATTTGGTTGTCAAGATTACAATGCAAGAAAAGCCATTGCTTCTCGGTTGAAGATGCAAGGTGATGGAAGCAGTCCTGGAACATCATTTAGAATTTCTGACACAGAAATCTTCTTACATACAGGCATTGAAAATGTATCAGATGCCACTGCTGATCAGCATAGCACAGGAAACAATTCACCTTCACCAGAACTGATCAGCCCATATGACCCAACCAATGAGAACCGCAGCTCATTCTCTAGTAAAAAACCAGGTTCTGTAAATTATGCAGCACAACAGTTGAAACGCGTCATTGGCTGGCCCCGGATGAAGGAGAAAAAACCCGAAAGATTCAAGAAATCGGTTGATTTTGGTTCGGTGGATTCAAACAAGATATGCAGCAGCTCAGATGATGCACCAACACCACTTCGACAGAGATTTTCAAAGCCTTCATCACTTGCGAATAACAAACGGACACTTTCTGTGAGGAGCAACCAATCAAGTCCGTCTGCGAAGAAGAGGTTTGCTTGTGGCATAAGGCATGGTGTACTGCAGGCAATTCCACACATAACTGTTCCACGTCGGTCGCGCTCTAGTTCATTTTCAAAATCATCATCAATCTCTTCACCTGGTTCTCTAGATAAACAAAAAGGTGTGTACATTGAAACTGATACTGCTGGACCATCTTGGTCAAATCATGTAGTTGATGATGAAACGCCAAACTTGGGTAAACAAGGCTCCCTGAATAGAAGGTTAAGGAGCCAGTATTTCTGTTTTGGTACCTCAGGCCTATCTGTGAAAAACCCTGTTGCCAGGCAGCAGCAGCAGCAGCAACAGCAGAACCAAAGTTTCAAGCATGCTTCTCCTCCTCCTCCTGTTATTTCAGTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

691

Amino Acids

76.12

Weight (kDa)

9.45

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1958
AccB1I GGYRCC 1 cut(s) 1958
AccI GTMKAC 1 cut(s) 546
AccII CGCG 2 cut(s) 1488, 1768
AciI CCGC 3 cut(s) 118, 700, 1426
AclI AACGTT 2 cut(s) 231, 872
AclWI GGATC 1 cut(s) 673
AcsI RAATTY 5 cut(s) 162, 398, 598, 933, 1293
AcuI CTGAAG 2 cut(s) 834, 965
AfaI GTAC 6 cut(s) 37, 317, 719, 1728, 1838, 1960
AfiI CCNNNNNNNGG 4 cut(s) 922, 1027, 1510, 1904
AflIII ACRYGT 1 cut(s) 1486
AjiI CACGTC 1 cut(s) 1760
AjnI CCWGG 4 cut(s) 1276, 1450, 1807, 1991
AjuI GAANNNNNNNTTGG 4 cut(s) 384, 416, 510, 542
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 673
AlwNI CAGNNNCTG 3 cut(s) 689, 943, 1457
AoxI GGCC 3 cut(s) 1145, 1499, 1966
ApoI RAATTY 5 cut(s) 162, 398, 598, 933, 1293
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
Asp700I GAANNNNTTC 3 cut(s) 873, 968, 1375
Asp718I GGTACC 1 cut(s) 1958
AspLEI GCGC 1 cut(s) 1770
AspS9I GGNCC 5 cut(s) 43, 925, 1146, 1500, 1859
AsuC2I CCSGG 1 cut(s) 1504
AsuHPI GGTGA 4 cut(s) 1274, 1371, 1377, 1797
AvaII GGWCC 3 cut(s) 43, 925, 1859
AxyI CCTNAGG 1 cut(s) 1963
BanI GGYRCC 1 cut(s) 1958
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 987
Bbv12I GWGCWC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 328
BccI CCATC 7 cut(s) 21, 300, 553, 765, 1106, 1259, 1870
BceAI ACGGC 2 cut(s) 207, 1044
BciT130I CCWGG 4 cut(s) 1278, 1452, 1809, 1993
BclI TGATCA 2 cut(s) 1354, 1395
BcnI CCSGG 1 cut(s) 1504
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 4 cut(s) 432, 1440, 1773, 1817
BfmI CTRYAG 2 cut(s) 807, 1730
Bme1390I CCNGG 5 cut(s) 1278, 1452, 1504, 1809, 1993
Bme18I GGWCC 3 cut(s) 43, 925, 1859
BmgBI CACGTC 1 cut(s) 1760
BmgT120I GGNCC 5 cut(s) 43, 925, 1146, 1500, 1859
BmiI GGNNCC 6 cut(s) 44, 1148, 1502, 1918, 1940, 1960
BmrFI CCNGG 5 cut(s) 1278, 1452, 1504, 1809, 1993
BmsI GCATC 5 cut(s) 737, 1166, 1245, 1333, 1582
BpiI GAAGAC 1 cut(s) 987
BplI GAGNNNNNCTC 2 cut(s) 99, 131
BpmI CTGGAG 1 cut(s) 885
Bpu10I CCTNAGC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 1504
BsaJI CCNNGG 1 cut(s) 1502
Bsc4I CCNNNNNNNGG 4 cut(s) 922, 1027, 1510, 1904
Bse1I ACTGG 1 cut(s) 1942
Bse21I CCTNAGG 1 cut(s) 1963
Bse3DI GCAATG 2 cut(s) 773, 1236
BseBI CCWGG 4 cut(s) 1278, 1452, 1809, 1993
BseDI CCNNGG 1 cut(s) 1502
BseGI GGATG 3 cut(s) 193, 311, 1512
BseLI CCNNNNNNNGG 4 cut(s) 922, 1027, 1510, 1904
BseMI GCAATG 2 cut(s) 773, 1236
BseMII CTCAG 7 cut(s) 342, 438, 648, 1150, 1155, 1599, 1977
BseNI ACTGG 1 cut(s) 1942
BseRI GAGGAG 6 cut(s) 104, 606, 1681, 2034, 2037, 2040
BseYI CCCAGC 1 cut(s) 689
Bsh1236I CGCG 2 cut(s) 1488, 1768
Bsh1285I CGRYCG 1 cut(s) 1766
BshFI GGCC 3 cut(s) 1147, 1501, 1968
BshNI GGYRCC 1 cut(s) 1958
BsiEI CGRYCG 1 cut(s) 1766
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 1504
BslFI GGGAC 2 cut(s) 56, 545
BslI CCNNNNNNNGG 4 cut(s) 922, 1027, 1510, 1904
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 56, 545
BsnI GGCC 3 cut(s) 1147, 1501, 1968
Bsp1286I GDGCHC 1 cut(s) 114
Bsp1407I TGTACA 2 cut(s) 315, 1836
Bsp143I GATC 3 cut(s) 665, 1354, 1395
BspACI CCGC 3 cut(s) 118, 700, 1426
BspANI GGCC 3 cut(s) 1147, 1501, 1968
BspCNI CTCAG 7 cut(s) 341, 439, 647, 1149, 1156, 1598, 1976
BspFNI CGCG 2 cut(s) 1488, 1768
BspLI GGNNCC 6 cut(s) 44, 1148, 1502, 1918, 1940, 1960
BspMAI CTGCAG 2 cut(s) 811, 1734
BspPI GGATC 1 cut(s) 673
BspT107I GGYRCC 1 cut(s) 1958
BsrDI GCAATG 2 cut(s) 773, 1236
BsrGI TGTACA 2 cut(s) 315, 1836
BsrI ACTGG 1 cut(s) 1942
BssECI CCNNGG 1 cut(s) 1502
BssMI GATC 3 cut(s) 665, 1354, 1395
BssNAI GTATAC 1 cut(s) 547
Bst1107I GTATAC 1 cut(s) 547
Bst2UI CCWGG 4 cut(s) 1278, 1452, 1809, 1993
Bst4CI ACNGT 5 cut(s) 181, 201, 420, 1479, 1753
Bst6I CTCTTC 3 cut(s) 27, 1691, 1807
BstAPI GCANNNNNTGC 1 cut(s) 578
BstAUI TGTACA 2 cut(s) 315, 1836
BstC8I GCNNGC 3 cut(s) 1499, 1734, 2037
BstDEI CTNAG 7 cut(s) 328, 447, 634, 1136, 1164, 1585, 1963
BstF5I GGATG 3 cut(s) 193, 311, 1512
BstFNI CGCG 2 cut(s) 1488, 1768
BstHHI GCGC 1 cut(s) 1770
BstKTI GATC 3 cut(s) 668, 1357, 1398
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 3 cut(s) 665, 1354, 1395
BstMCI CGRYCG 1 cut(s) 1766
BstNI CCWGG 4 cut(s) 1278, 1452, 1809, 1993
BstNSI RCATGY 2 cut(s) 782, 2039
BstSCI CCNGG 5 cut(s) 1276, 1450, 1502, 1807, 1991
BstSFI CTRYAG 2 cut(s) 807, 1730
BstUI CGCG 2 cut(s) 1488, 1768
BstV2I GAAGAC 1 cut(s) 987
BstZ17I GTATAC 1 cut(s) 547
Bsu36I CCTNAGG 1 cut(s) 1963
BsuRI GGCC 3 cut(s) 1147, 1501, 1968
BtrI CACGTC 1 cut(s) 1760
BtsCI GGATG 3 cut(s) 193, 311, 1512
BtsI GCAGTG 1 cut(s) 1347
BtsIMutI CAGTG 3 cut(s) 444, 1347, 2070
Cac8I GCNNGC 3 cut(s) 1499, 1734, 2037
CaiI CAGNNNCTG 3 cut(s) 689, 943, 1457
CfoI GCGC 1 cut(s) 1770
Cfr13I GGNCC 5 cut(s) 43, 925, 1146, 1500, 1859
CseI GACGC 1 cut(s) 1477
CsiI ACCWGGT 2 cut(s) 1450, 1807
Csp6I GTAC 6 cut(s) 36, 316, 718, 1727, 1837, 1959
CviAII CATG 8 cut(s) 578, 680, 779, 850, 1117, 1721, 1877, 2036
CviQI GTAC 6 cut(s) 36, 316, 718, 1727, 1837, 1959
DdeI CTNAG 7 cut(s) 328, 447, 634, 1136, 1164, 1585, 1963
DpnI GATC 3 cut(s) 667, 1356, 1397
DpnII GATC 3 cut(s) 665, 1354, 1395
Eam1104I CTCTTC 3 cut(s) 27, 1691, 1807
EarI CTCTTC 3 cut(s) 27, 1691, 1807
Ecl136II GAGCTC 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 1968
Eco24I GRGCYC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 3 cut(s) 43, 925, 1859
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 834, 965
Eco81I CCTNAGG 1 cut(s) 1963
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 4 cut(s) 1276, 1450, 1807, 1991
EcoRV GATATC 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 8 cut(s) 581, 683, 782, 853, 1120, 1724, 1880, 2039
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 2 cut(s) 56, 545
FatI CATG 8 cut(s) 577, 679, 778, 849, 1116, 1720, 1876, 2035
FauI CCCGC 1 cut(s) 693
FauNDI CATATG 1 cut(s) 1405
FbaI TGATCA 2 cut(s) 1354, 1395
FblI GTMKAC 1 cut(s) 546
FokI GGATG 3 cut(s) 200, 318, 1519
FriOI GRGCYC 1 cut(s) 114
FspBI CTAG 4 cut(s) 432, 1440, 1773, 1817
GlaI GCGC 1 cut(s) 1769
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 3 cut(s) 1147, 1501, 1968
HapII CCGG 1 cut(s) 1504
HgaI GACGC 1 cut(s) 1477
HhaI GCGC 1 cut(s) 1770
Hin1II CATG 8 cut(s) 581, 683, 782, 853, 1120, 1724, 1880, 2039
Hin6I GCGC 1 cut(s) 1768
HinP1I GCGC 1 cut(s) 1768
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HindIII AAGCTT 2 cut(s) 242, 966
HinfI GANTC 3 cut(s) 260, 1530, 1562
HpaI GTTAAC 1 cut(s) 565
HpaII CCGG 1 cut(s) 1504
HphI GGTGA 4 cut(s) 1274, 1371, 1377, 1797
Hpy166II GTNNAC 6 cut(s) 318, 547, 565, 1727, 1837, 1910
Hpy188III TCNNGA 7 cut(s) 107, 173, 353, 864, 1214, 1534, 1817
Hpy8I GTNNAC 6 cut(s) 318, 547, 565, 1727, 1837, 1910
Hpy99I CGWCG 3 cut(s) 171, 841, 1764
HpyCH4III ACNGT 5 cut(s) 181, 201, 420, 1479, 1753
HpyCH4IV ACGT 3 cut(s) 231, 872, 1759
HpyF3I CTNAG 7 cut(s) 328, 447, 634, 1136, 1164, 1585, 1963
HpySE526I ACGT 3 cut(s) 231, 872, 1759
Hsp92II CATG 8 cut(s) 581, 683, 782, 853, 1120, 1724, 1880, 2039
HspAI GCGC 1 cut(s) 1768
KpnI GGTACC 1 cut(s) 1962
Ksp22I TGATCA 2 cut(s) 1354, 1395
KspAI GTTAAC 1 cut(s) 565
Kzo9I GATC 3 cut(s) 665, 1354, 1395
LmnI GCTCC 5 cut(s) 117, 616, 1668, 1922, 1938
LweI GCATC 5 cut(s) 737, 1166, 1245, 1333, 1582
MabI ACCWGGT 2 cut(s) 1450, 1807
MaeI CTAG 4 cut(s) 432, 1440, 1773, 1817
MaeII ACGT 3 cut(s) 231, 872, 1759
MaeIII GTNAC 1 cut(s) 89
MalI GATC 3 cut(s) 667, 1356, 1397
MboI GATC 3 cut(s) 665, 1354, 1395
MboII GAAGA 9 cut(s) 14, 530, 930, 992, 1264, 1303, 1705, 1708, 1794
MfeI CAATTG 2 cut(s) 950, 1086
MhlI GDGCHC 1 cut(s) 114
MluI ACGCGT 1 cut(s) 1486
MroXI GAANNNNTTC 3 cut(s) 873, 968, 1375
MseI TTAA 3 cut(s) 564, 1934, 2071
MslI CAYNNNNRTG 1 cut(s) 848
MspA1I CMGCKG 5 cut(s) 80, 323, 332, 689, 812
MspI CCGG 1 cut(s) 1504
MspR9I CCNGG 5 cut(s) 1278, 1452, 1504, 1809, 1993
MunI CAATTG 2 cut(s) 950, 1086
MvaI CCWGG 4 cut(s) 1278, 1452, 1809, 1993
MvnI CGCG 2 cut(s) 1488, 1768
NciI CCSGG 1 cut(s) 1504
NdeI CATATG 1 cut(s) 1405
NdeII GATC 3 cut(s) 665, 1354, 1395
NlaIII CATG 8 cut(s) 581, 683, 782, 853, 1120, 1724, 1880, 2039
NlaIV GGNNCC 6 cut(s) 44, 1148, 1502, 1918, 1940, 1960
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 2 cut(s) 782, 2039
PaeI GCATGC 1 cut(s) 2039
PceI AGGCCT 1 cut(s) 1968
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PdmI GAANNNNTTC 3 cut(s) 873, 968, 1375
PfeI GAWTC 3 cut(s) 260, 1530, 1562
PfoI TCCNGGA 1 cut(s) 1276
Psp124BI GAGCTC 1 cut(s) 114
Psp1406I AACGTT 2 cut(s) 231, 872
Psp6I CCWGG 4 cut(s) 1276, 1450, 1807, 1991
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 4 cut(s) 1276, 1450, 1807, 1991
PspN4I GGNNCC 6 cut(s) 44, 1148, 1502, 1918, 1940, 1960
PspPI GGNCC 5 cut(s) 43, 925, 1146, 1500, 1859
PstI CTGCAG 2 cut(s) 811, 1734
PstNI CAGNNNCTG 3 cut(s) 689, 943, 1457
PvuII CAGCTG 5 cut(s) 80, 323, 332, 689, 812
RsaI GTAC 6 cut(s) 37, 317, 719, 1728, 1838, 1960
RsaNI GTAC 6 cut(s) 36, 316, 718, 1727, 1837, 1959
RseI CAYNNNNRTG 1 cut(s) 848
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 3 cut(s) 564, 1934, 2071
Sau3AI GATC 3 cut(s) 665, 1354, 1395
Sau96I GGNCC 5 cut(s) 43, 925, 1146, 1500, 1859
ScrFI CCNGG 5 cut(s) 1278, 1452, 1504, 1809, 1993
SduI GDGCHC 1 cut(s) 114
SexAI ACCWGGT 2 cut(s) 1450, 1807
SfaNI GCATC 5 cut(s) 737, 1166, 1245, 1333, 1582
SfcI CTRYAG 2 cut(s) 807, 1730
SinI GGWCC 3 cut(s) 43, 925, 1859
SmiMI CAYNNNNRTG 1 cut(s) 848
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SphI GCATGC 1 cut(s) 2039
SseBI AGGCCT 1 cut(s) 1968
SsiI CCGC 3 cut(s) 118, 700, 1426
SspMI CTAG 4 cut(s) 432, 1440, 1773, 1817
SstI GAGCTC 1 cut(s) 114
StuI AGGCCT 1 cut(s) 1968
StyD4I CCNGG 5 cut(s) 1276, 1450, 1502, 1807, 1991
TaaI ACNGT 5 cut(s) 181, 201, 420, 1479, 1753
TaiI ACGT 3 cut(s) 234, 875, 1762
TaqI TCGA 4 cut(s) 25, 106, 238, 1609
TaqII GACCGA 2 cut(s) 942, 1752
TatI WGTACW 4 cut(s) 35, 315, 1726, 1836
TfiI GAWTC 3 cut(s) 260, 1530, 1562
Tru1I TTAA 3 cut(s) 564, 1934, 2071
Tru9I TTAA 3 cut(s) 564, 1934, 2071
TscAI CASTG 3 cut(s) 451, 1354, 2070
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 6 cut(s) 566, 1037, 1523, 1620, 1767, 1905
TspGWI ACGGA 4 cut(s) 825, 1027, 1666, 1674
TspRI CASTG 3 cut(s) 451, 1354, 2070
VpaK11BI GGWCC 3 cut(s) 43, 925, 1859
XapI RAATTY 5 cut(s) 162, 398, 598, 933, 1293
XbaI TCTAGA 1 cut(s) 1816
XceI RCATGY 2 cut(s) 782, 2039
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 546
XmnI GAANNNNTTC 3 cut(s) 873, 968, 1375
XspI CTAG 4 cut(s) 432, 1440, 1773, 1817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.