pycom17g01380

Ankyrin repeats (many copies)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
940209 .. 942697
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01380.2

Sequence Viewer

Length: 1374 bp
ATGCCTCCCACATATTTTCCTCTGCGGTGGGAGAGCACTGGAGACCAATGGTGGTACGCGTCTCCGATCGACTACGCAGCCGCTAACGGCCACTACGACTTGGTTCGAGAGCTCCTCCGCATAGACGGCAACCACCTCATCAAGCTCACATCTCTCCGCCGCATCCGCCGCCTCGAGACAGTGTGGGACGACGAAGCACAGTATGATGATGTAGCCAGGTGTCGTTCGCGCGTTGCGCGGAAGCTCTTCCACGAATGCGAGTCCAAGAAAGAAAAAACAAACTCTCTCATAAGGGCTGGATACGGCGGTTGGCTTATGTACACCGCCGCCTCCGCCGGGGAGCTTGGTTTTGTCCAAGAACTTCTCGAGAGAAACCCTCTGCTTGTTTTCGGGGAAGGAGAATATGGGGTGACTGATATTTTCTATGCTGCTGCTAGGAGCAAGAATGTTGAGGTTTTCAGGCTGCTTTTTGACTTTGCGGTTTCGCCGAGGTTTATGACGGGGAGCCGCGGAGAGCTGGAGGAGCACATTGGGGAGATTCCAAGTGTTTATAAACGGGAAATGGTTAACAGAGCGGTTCATGCAGCGGCGAGAGGCGGAAATTTGAGTATTTTGAAGGACCTTCTTTCGGATTGTGAGGATGTTTTGGCTTATAGGGATATTCAGGGATCAACTGTGCTCCATGCAGCGGCTGGGAAAGGAAGGGTAGAGGTAGTGAAGTACCTTGTGGCATCCTTTGATATCATAAACTCCACTGACCGCCAGGGCAACACAGCATTGCATGTTGCAGCTTCAAGGGGCCAACTTGCCGCAGCCGAAGCGCTTATATCTGCATCCCCGTCATCCATTATTGCACGAAACAACTCTGGAGAAACGTTTCTCCACAAGGCTATATCCGGCTTCCAAAGTCCTGCCTTCCGAAGACTGGACAGACAAATTCAGCTTCTGAAGCAACTGGTGAGTAAGAAAGCTTTCAATATCGAACACATCATCAATGCGAAAAACAATGAAGGACGGACTGCCCTTCACACGGCAATCATTGGGGATGTGCATTCCGATCTAGTCCAACTTCTGATGATTGCACAATCAATTGATGTGAATGCGCGCGACATGGATGGCATGACAGCGCTTGATTACCTTAGACAATGGCCTCGTTCAGCATCATCTGATATACTAATCAGGCAGCTGCTTTCAGCTGGGGGAATATTTGGTTGTGAAGATTACAATGCAAGAAAAGTGATTGCTTCGCGCTTGAAGATGCAAGGCGATGGAGGTAGTCCCGGAACATCATTTAGAATCTCTGACACGGAAATCTTCTTGTATACTGGCATTGAAAATGTATCAGATGCTACTGCTGATCGATCCGTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

50.72

Weight (kDa)

6.62

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
AccBSI CCGCTC 1 cut(s) 575
AccI GTMKAC 1 cut(s) 1322
AccII CGCG 8 cut(s) 59, 229, 231, 238, 510, 1105, 1107, 1249
AclI AACGTT 1 cut(s) 875
AclWI GGATC 2 cut(s) 676, 1356
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 601, 936
AcuI CTGAAG 1 cut(s) 968
AfaI GTAC 3 cut(s) 56, 320, 722
AfeI AGCGCT 2 cut(s) 822, 1128
AfiI CCNNNNNNNGG 5 cut(s) 336, 628, 688, 925, 1030
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 5 cut(s) 616, 795, 976, 1255, 1334
AjnI CCWGG 2 cut(s) 215, 762
Alw21I GWGCWC 4 cut(s) 38, 114, 528, 681
Alw26I GTCTC 3 cut(s) 36, 66, 170
AlwI GGATC 2 cut(s) 676, 1356
AlwNI CAGNNNCTG 2 cut(s) 692, 946
Ama87I CYCGRG 2 cut(s) 173, 365
Aor51HI AGCGCT 2 cut(s) 822, 1128
AoxI GGCC 3 cut(s) 88, 799, 1148
ApoI RAATTY 2 cut(s) 601, 936
Asp700I GAANNNNTTC 3 cut(s) 245, 876, 971
AspLEI GCGC 7 cut(s) 231, 238, 823, 1105, 1107, 1129, 1251
AspS9I GGNCC 2 cut(s) 619, 799
AsuC2I CCSGG 2 cut(s) 337, 1281
AsuHPI GGTGA 2 cut(s) 421, 970
AvaI CYCGRG 2 cut(s) 173, 365
AvaII GGWCC 1 cut(s) 619
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 928
Bbv12I GWGCWC 4 cut(s) 38, 114, 528, 681
BccI CCATC 2 cut(s) 1109, 1262
BceAI ACGGC 4 cut(s) 103, 142, 319, 1047
BciT130I CCWGG 2 cut(s) 217, 764
BciVI GTATCC 1 cut(s) 293
BcnI CCSGG 2 cut(s) 337, 1281
BcoDI GTCTC 3 cut(s) 36, 66, 170
BfaI CTAG 2 cut(s) 435, 1061
BfoI RGCGCY 2 cut(s) 824, 1130
BfuI GTATCC 1 cut(s) 293
Bme1390I CCNGG 4 cut(s) 217, 337, 764, 1281
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 2 cut(s) 173, 365
BmgT120I GGNCC 2 cut(s) 619, 799
BmiI GGNNCC 2 cut(s) 506, 800
BmrFI CCNGG 4 cut(s) 217, 337, 764, 1281
BmsI GCATC 6 cut(s) 171, 740, 842, 1169, 1248, 1336
BpiI GAAGAC 1 cut(s) 928
BplI GAGNNNNNCTC 4 cut(s) 99, 131, 361, 393
BpmI CTGGAG 3 cut(s) 60, 539, 888
BpuMI CCSGG 2 cut(s) 337, 1281
Bsa29I ATCGAT 1 cut(s) 1360
BsaI GGTCTC 1 cut(s) 36
BsaJI CCNNGG 4 cut(s) 336, 488, 508, 763
Bsc4I CCNNNNNNNGG 5 cut(s) 336, 628, 688, 925, 1030
Bse1I ACTGG 4 cut(s) 43, 930, 960, 1330
Bse3DI GCAATG 1 cut(s) 776
BseBI CCWGG 2 cut(s) 217, 764
BseCI ATCGAT 1 cut(s) 1360
BseDI CCNNGG 4 cut(s) 336, 488, 508, 763
BseGI GGATG 7 cut(s) 162, 646, 731, 833, 842, 1051, 1120
BseLI CCNNNNNNNGG 5 cut(s) 336, 628, 688, 925, 1030
BseMI GCAATG 1 cut(s) 776
BseNI ACTGG 4 cut(s) 43, 930, 960, 1330
BsePI GCGCGC 1 cut(s) 1103
BseRI GAGGAG 2 cut(s) 104, 536
BseYI CCCAGC 2 cut(s) 692, 1196
Bsh1236I CGCG 8 cut(s) 59, 229, 231, 238, 510, 1105, 1107, 1249
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 90, 801, 1150
BshVI ATCGAT 1 cut(s) 1360
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 4 cut(s) 38, 114, 528, 681
BsiHKCI CYCGRG 2 cut(s) 173, 365
BsiSI CCGG 3 cut(s) 336, 897, 1281
BslFI GGGAC 2 cut(s) 200, 1263
BslI CCNNNNNNNGG 5 cut(s) 336, 628, 688, 925, 1030
BsmAI GTCTC 3 cut(s) 36, 66, 170
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 200, 1263
BsmI GAATGC 3 cut(s) 260, 1051, 1105
BsnI GGCC 3 cut(s) 90, 801, 1150
Bso31I GGTCTC 1 cut(s) 36
BsoBI CYCGRG 2 cut(s) 173, 365
Bsp1286I GDGCHC 4 cut(s) 38, 114, 528, 681
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 5 cut(s) 66, 668, 1057, 1357, 1361
BspANI GGCC 3 cut(s) 90, 801, 1150
BspDI ATCGAT 1 cut(s) 1360
BspFNI CGCG 8 cut(s) 59, 229, 231, 238, 510, 1105, 1107, 1249
BspLI GGNNCC 2 cut(s) 506, 800
BspPI GGATC 2 cut(s) 676, 1356
BspQI GCTCTTC 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 36
BsrBI CCGCTC 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 776
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 4 cut(s) 43, 930, 960, 1330
BssECI CCNNGG 4 cut(s) 336, 488, 508, 763
BssHII GCGCGC 1 cut(s) 1103
BssMI GATC 5 cut(s) 66, 668, 1057, 1357, 1361
BssNAI GTATAC 1 cut(s) 1323
Bst1107I GTATAC 1 cut(s) 1323
Bst2UI CCWGG 2 cut(s) 217, 764
Bst4CI ACNGT 3 cut(s) 181, 201, 676
Bst6I CTCTTC 1 cut(s) 251
BstAUI TGTACA 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 1105
BstDEI CTNAG 1 cut(s) 1139
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 7 cut(s) 162, 646, 731, 833, 842, 1051, 1120
BstFNI CGCG 8 cut(s) 59, 229, 231, 238, 510, 1105, 1107, 1249
BstH2I RGCGCY 2 cut(s) 824, 1130
BstHHI GCGC 7 cut(s) 231, 238, 823, 1105, 1107, 1129, 1251
BstKTI GATC 5 cut(s) 69, 671, 1060, 1360, 1364
BstMAI GTCTC 3 cut(s) 36, 66, 170
BstMBI GATC 5 cut(s) 66, 668, 1057, 1357, 1361
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 9 cut(s) 126, 165, 168, 235, 332, 523, 581, 818, 949
BstNI CCWGG 2 cut(s) 217, 764
BstNSI RCATGY 1 cut(s) 785
BstSCI CCNGG 4 cut(s) 215, 335, 762, 1279
BstUI CGCG 8 cut(s) 59, 229, 231, 238, 510, 1105, 1107, 1249
BstV2I GAAGAC 1 cut(s) 928
BstZ17I GTATAC 1 cut(s) 1323
Bsu15I ATCGAT 1 cut(s) 1360
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 3 cut(s) 90, 801, 1150
BsuTUI ATCGAT 1 cut(s) 1360
BtgI CCRYGG 1 cut(s) 508
BtgZI GCGATG 1 cut(s) 1281
BtsCI GGATG 7 cut(s) 162, 646, 731, 833, 842, 1051, 1120
BtsIMutI CAGTG 3 cut(s) 36, 186, 753
Cac8I GCNNGC 1 cut(s) 1105
CaiI CAGNNNCTG 2 cut(s) 692, 946
CfoI GCGC 7 cut(s) 231, 238, 823, 1105, 1107, 1129, 1251
Cfr13I GGNCC 2 cut(s) 619, 799
Cfr42I CCGCGG 1 cut(s) 511
ClaI ATCGAT 1 cut(s) 1360
CseI GACGC 1 cut(s) 48
Csp6I GTAC 3 cut(s) 55, 319, 721
CviAII CATG 5 cut(s) 581, 683, 782, 1111, 1120
CviQI GTAC 3 cut(s) 55, 319, 721
DdeI CTNAG 1 cut(s) 1139
DpnI GATC 5 cut(s) 68, 670, 1059, 1359, 1363
DpnII GATC 5 cut(s) 66, 668, 1057, 1357, 1361
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 4 cut(s) 146, 155, 322, 612
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 742
Eco47I GGWCC 1 cut(s) 619
Eco47III AGCGCT 2 cut(s) 822, 1128
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 968
Eco88I CYCGRG 2 cut(s) 173, 365
EcoICRI GAGCTC 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 2 cut(s) 215, 762
EcoRV GATATC 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 5 cut(s) 584, 686, 785, 1114, 1123
FaqI GGGAC 2 cut(s) 200, 1263
FatI CATG 5 cut(s) 580, 682, 781, 1110, 1119
FblI GTMKAC 1 cut(s) 1322
FokI GGATG 7 cut(s) 149, 653, 718, 820, 829, 1058, 1127
FriOI GRGCYC 1 cut(s) 114
FspBI CTAG 2 cut(s) 435, 1061
GlaI GCGC 7 cut(s) 230, 237, 822, 1104, 1106, 1128, 1250
GsaI CCCAGC 2 cut(s) 696, 1200
GsuI CTGGAG 3 cut(s) 60, 539, 888
HaeII RGCGCY 2 cut(s) 824, 1130
HaeIII GGCC 3 cut(s) 90, 801, 1150
HapII CCGG 3 cut(s) 336, 897, 1281
HgaI GACGC 1 cut(s) 48
HhaI GCGC 7 cut(s) 231, 238, 823, 1105, 1107, 1129, 1251
Hin1II CATG 5 cut(s) 584, 686, 785, 1114, 1123
Hin6I GCGC 7 cut(s) 229, 236, 821, 1103, 1105, 1127, 1249
HinP1I GCGC 7 cut(s) 229, 236, 821, 1103, 1105, 1127, 1249
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 3 cut(s) 260, 538, 1296
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 3 cut(s) 336, 897, 1281
HphI GGTGA 2 cut(s) 421, 970
Hpy166II GTNNAC 3 cut(s) 321, 568, 1323
Hpy188I TCNGA 9 cut(s) 66, 631, 920, 948, 1057, 1074, 1168, 1303, 1345
Hpy188III TCNNGA 5 cut(s) 107, 175, 365, 367, 867
Hpy8I GTNNAC 3 cut(s) 321, 568, 1323
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 7 cut(s) 389, 610, 632, 696, 925, 1004, 1034
HpyCH4III ACNGT 3 cut(s) 181, 201, 676
HpyCH4IV ACGT 1 cut(s) 875
HpyF10VI GCNNNNNNNGC 9 cut(s) 126, 165, 168, 235, 332, 523, 581, 818, 949
HpyF3I CTNAG 1 cut(s) 1139
HpySE526I ACGT 1 cut(s) 875
Hsp92II CATG 5 cut(s) 584, 686, 785, 1114, 1123
HspAI GCGC 7 cut(s) 229, 236, 821, 1103, 1105, 1127, 1249
KspAI GTTAAC 1 cut(s) 568
KspI CCGCGG 1 cut(s) 511
Kzo9I GATC 5 cut(s) 66, 668, 1057, 1357, 1361
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 6 cut(s) 117, 340, 438, 504, 523, 684
LweI GCATC 6 cut(s) 171, 740, 842, 1169, 1248, 1336
MaeI CTAG 2 cut(s) 435, 1061
MaeII ACGT 1 cut(s) 875
MaeIII GTNAC 1 cut(s) 409
MalI GATC 5 cut(s) 68, 670, 1059, 1359, 1363
MbiI CCGCTC 1 cut(s) 575
MboI GATC 5 cut(s) 66, 668, 1057, 1357, 1361
MboII GAAGA 5 cut(s) 238, 933, 1229, 1267, 1306
MfeI CAATTG 1 cut(s) 1089
MhlI GDGCHC 4 cut(s) 38, 114, 528, 681
MluCI AATT 3 cut(s) 601, 936, 1089
MluI ACGCGT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 1090
MroXI GAANNNNTTC 3 cut(s) 245, 876, 971
MseI TTAA 1 cut(s) 567
MspA1I CMGCKG 5 cut(s) 510, 587, 689, 1186, 1196
MspI CCGG 3 cut(s) 336, 897, 1281
MspR9I CCNGG 4 cut(s) 217, 337, 764, 1281
MunI CAATTG 1 cut(s) 1089
Mva1269I GAATGC 3 cut(s) 260, 1051, 1105
MvaI CCWGG 2 cut(s) 217, 764
MvnI CGCG 8 cut(s) 59, 229, 231, 238, 510, 1105, 1107, 1249
MwoI GCNNNNNNNGC 9 cut(s) 126, 165, 168, 235, 332, 523, 581, 818, 949
NciI CCSGG 2 cut(s) 337, 1281
NdeII GATC 5 cut(s) 66, 668, 1057, 1357, 1361
NlaIII CATG 5 cut(s) 584, 686, 785, 1114, 1123
NlaIV GGNNCC 2 cut(s) 506, 800
NmeAIII GCCGAG 1 cut(s) 513
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 785
PaeR7I CTCGAG 2 cut(s) 173, 365
PauI GCGCGC 1 cut(s) 1103
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 3 cut(s) 260, 1051, 1105
PdmI GAANNNNTTC 3 cut(s) 245, 876, 971
PfeI GAWTC 2 cut(s) 538, 1296
PfoI TCCNGGA 1 cut(s) 1279
Ple19I CGATCG 1 cut(s) 69
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PpuMI RGGWCCY 1 cut(s) 619
PsiI TTATAA 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 114
Psp1406I AACGTT 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 2 cut(s) 215, 762
PspFI CCCAGC 2 cut(s) 692, 1196
PspGI CCWGG 2 cut(s) 215, 762
PspN4I GGNNCC 2 cut(s) 506, 800
PspPI GGNCC 2 cut(s) 619, 799
PspPPI RGGWCCY 1 cut(s) 619
PstNI CAGNNNCTG 2 cut(s) 692, 946
PteI GCGCGC 1 cut(s) 1103
PvuI CGATCG 1 cut(s) 69
PvuII CAGCTG 2 cut(s) 1186, 1196
RsaI GTAC 3 cut(s) 56, 320, 722
RsaNI GTAC 3 cut(s) 55, 319, 721
SacI GAGCTC 1 cut(s) 114
SacII CCGCGG 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 567
Sau3AI GATC 5 cut(s) 66, 668, 1057, 1357, 1361
Sau96I GGNCC 2 cut(s) 619, 799
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 4 cut(s) 217, 337, 764, 1281
SduI GDGCHC 4 cut(s) 38, 114, 528, 681
SfaNI GCATC 6 cut(s) 171, 740, 842, 1169, 1248, 1336
Sfr274I CTCGAG 2 cut(s) 173, 365
Sfr303I CCGCGG 1 cut(s) 511
SgrBI CCGCGG 1 cut(s) 511
SinI GGWCC 1 cut(s) 619
SlaI CTCGAG 2 cut(s) 173, 365
SmlI CTYRAG 2 cut(s) 173, 365
SmoI CTYRAG 2 cut(s) 173, 365
Sse9I AATT 3 cut(s) 601, 936, 1089
SspI AATATT 1 cut(s) 1206
SspMI CTAG 2 cut(s) 435, 1061
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 215, 335, 762, 1279
TaaI ACNGT 3 cut(s) 181, 201, 676
TaiI ACGT 1 cut(s) 878
TaqI TCGA 6 cut(s) 69, 106, 174, 366, 981, 1360
TasI AATT 3 cut(s) 601, 936, 1089
TatI WGTACW 1 cut(s) 318
TauI GCSGC 8 cut(s) 83, 162, 171, 329, 510, 590, 692, 812
TfiI GAWTC 2 cut(s) 538, 1296
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 3 cut(s) 43, 186, 760
TseFI GTSAC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 569, 1023
TspGWI ACGGA 3 cut(s) 1030, 1322, 1354
TspRI CASTG 3 cut(s) 43, 186, 760
VpaK11BI GGWCC 1 cut(s) 619
XapI RAATTY 2 cut(s) 601, 936
XceI RCATGY 1 cut(s) 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 689
XhoI CTCGAG 2 cut(s) 173, 365
XmiI GTMKAC 1 cut(s) 1322
XmnI GAANNNNTTC 3 cut(s) 245, 876, 971
XspI CTAG 2 cut(s) 435, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.