Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8370771.1

Orthogroup ID

OG0002201

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1101

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8370771.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1100 bp

atgcaggtggttaaatatctaatagcatcctttgatatcagcacatttgtagatagtcaagggaatacagctttacatgttgccgcttacaggggtcacttagctgtggtggaagtgctaattggtgcatctccctcattagtctctttatcgaactactatggagatacatttctacacatggcagtggctggtttccgagctcctggtttccggagagtggacaaacagattgagctcatcaagcaattagtatgtggtgatattgtgaacatgcaggacatcgttaatgataggaacaacaatggaagaacagctcttcacatagctgttagtgagaacatacagtctagtgtggtggaactcctcatgactgttccgtcaatcgatctgaacattcgtgatggtgatggcatgaccccattggatattcttaagcaaaggccaaagtcaccatcttctgaacttttgatcaagcagttgatttcagctggaggaatctccaagtgtcaagatcataaagcgagaaatgcccttgtttctcatttgagaatgcatggtattgggagcagtcctggaacctctttccgaatccctgatgcagagatattcttatacacgggctatgataatgcttccgatgccagtggtgatcagtcatgtctacaattcagtaggtgctcgggtgaaataagtcaggttgattcacccaactcagtgagcaataagaagactggttctgtaaattatgctgcaaggagccttaagtttcttcttcaatggccgaggaggaaagtgaaaaaggaatctagcagagacttgggagatgctgattccttggactcgtatagtccatctacagatttggaagacagtccaatcccacttcggcagatgtatttgaaatcttcatcccttcccaacagcaaaaggatactttctgccaggactcgtcttccaagcccctacactaaaatgagatatactgctggtctaacacatggtgtgattcaagcagtgcctcagtttgcttttccagctcaatcacatgcaagtcctctgtcacgatcatccatgtcttcaccttccttcgtggagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5

Protein Analysis

366

Amino Acids

39.95

Weight (kDa)

9.06

Isoelectric Point (pI)

63.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01750 AT3G01750
fragaria_vesca	FvH4_4g24410 FvH4_4g24410 FvH4_4g24410 FvH4_6g52800 FvH4_6g52800
malus_domestica	MD09G1016700.v1.1 MD13G1111600.v1.1 MD16G1111200.v1.1 MD17G1017100.v1.1
prunus_persica	Prupe.1G233900_v2.0.a1 Prupe.3G300800_v2.0.a1 Prupe.3G300800_v2.0.a1
pyrus_communis	pycom111g01360 pycom13g09690 pycom16g09420 pycom17g01380
rosa_chinensis	RchiOBHm_Chr2g0174421 RchiOBHm_Chr4g0431261
rosa_laevigata	RLG00000006915 RLG00000022264
rosa_multiflora	Rmu_co8370771.1_g000001 Rmu_sc0002637.1_g000004 Rmu_sc0003649.1_g000028
rosa_roxburghii	Rroxscaffold_2G00078230 Rroxscaffold_5G00372800
rosa_rugosa	Rorug02G0576600 Rorug02G0576700 Rorug02G0576800 Rorug02G0576900 Rorug02G0577000 Rorug04G0249700
rosa_samantha	Rh2AG657800 Rh2BG668900 Rh2CG631800 Rh2DG682400 Rh4AG305600 Rh4BG313000 Rh4CG329200 Rh4DG309400
rosa_wichuraiana	Rw2G053880 Rw4G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	664
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	782
AdeI	CACNNNGTG	1 cut(s)	1004
AfiI	CCNNNNNNNGG	2 cut(s)	90, 220
AflII	CTTAAG	2 cut(s)	434, 764
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	779, 904, 1013
AjnI	CCWGG	3 cut(s)	205, 574, 944
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	8 cut(s)	71, 104, 203, 238, 317, 329, 491, 1040
AluI	AGCT	8 cut(s)	71, 104, 203, 238, 317, 329, 491, 1040
Alw21I	GWGCWC	3 cut(s)	205, 240, 683
Alw26I	GTCTC	2 cut(s)	148, 810
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	682
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	2 cut(s)	443, 782
ApeKI	GCWGC	1 cut(s)	752
AsuHPI	GGTGA	7 cut(s)	272, 419, 444, 662, 698, 699, 1074
AvaI	CYCGRG	1 cut(s)	682
BanII	GRGCYC	2 cut(s)	205, 240
BbsI	GAAGAC	4 cut(s)	737, 876, 947, 1071
Bbv12I	GWGCWC	3 cut(s)	205, 240, 683
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	4 cut(s)	398, 404, 463, 862
BciT130I	CCWGG	3 cut(s)	207, 576, 946
BciVI	GTATCC	1 cut(s)	927
BclI	TGATCA	2 cut(s)	471, 652
BcoDI	GTCTC	2 cut(s)	148, 810
BfaI	CTAG	2 cut(s)	351, 810
BfmI	CTRYAG	1 cut(s)	858
BfrI	CTTAAG	2 cut(s)	434, 764
BfuI	GTATCC	1 cut(s)	927
BisI	GCNGC	2 cut(s)	84, 753
BlsI	GCNGC	2 cut(s)	85, 754
Bme1390I	CCNGG	3 cut(s)	207, 576, 946
BmeT110I	CYCGRG	1 cut(s)	682
BmiI	GGNNCC	2 cut(s)	580, 761
BmrFI	CCNGG	3 cut(s)	207, 576, 946
BmsI	GCATC	5 cut(s)	35, 137, 589, 631, 817
BpiI	GAAGAC	4 cut(s)	737, 876, 947, 1071
BpmI	CTGGAG	1 cut(s)	513
Bsa29I	ATCGAT	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	785, 837
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 220
Bse1I	ACTGG	2 cut(s)	645, 739
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	3 cut(s)	207, 576, 946
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	785, 837
BseGI	GGATG	3 cut(s)	26, 911, 1070
BseLI	CCNNNNNNNGG	2 cut(s)	90, 220
BseMII	CTCAG	2 cut(s)	729, 1037
BseNI	ACTGG	2 cut(s)	645, 739
BseRI	GAGGAG	2 cut(s)	356, 802
BseXI	GCAGC	1 cut(s)	739
BshFI	GGCC	2 cut(s)	445, 784
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	3 cut(s)	205, 240, 683
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	90, 220
BsmAI	GTCTC	2 cut(s)	148, 810
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	2 cut(s)	445, 784
BsoBI	CYCGRG	1 cut(s)	682
Bsp1286I	GDGCHC	3 cut(s)	205, 240, 683
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	5 cut(s)	388, 471, 514, 652, 1067
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	445, 784
BspCNI	CTCAG	2 cut(s)	728, 1036
BspDI	ATCGAT	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	580, 761
BspQI	GCTCTTC	1 cut(s)	324
BspTI	CTTAAG	2 cut(s)	434, 764
BsrI	ACTGG	2 cut(s)	645, 739
BssECI	CCNNGG	2 cut(s)	785, 837
BssMI	GATC	5 cut(s)	388, 471, 514, 652, 1067
BssT1I	CCWWGG	1 cut(s)	837
Bst2UI	CCWGG	3 cut(s)	207, 576, 946
Bst4CI	ACNGT	3 cut(s)	348, 376, 875
Bst6I	CTCTTC	1 cut(s)	324
BstAFI	CTTAAG	2 cut(s)	434, 764
BstDEI	CTNAG	3 cut(s)	100, 715, 1023
BstF5I	GGATG	3 cut(s)	26, 911, 1070
BstKTI	GATC	5 cut(s)	391, 474, 517, 655, 1070
BstMAI	GTCTC	2 cut(s)	148, 810
BstMBI	GATC	5 cut(s)	388, 471, 514, 652, 1067
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 530, 641, 1037
BstNI	CCWGG	3 cut(s)	207, 576, 946
BstNSI	RCATGY	3 cut(s)	80, 277, 1052
BstSCI	CCNGG	3 cut(s)	205, 574, 944
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	1 cut(s)	739
BstV2I	GAAGAC	4 cut(s)	737, 876, 947, 1071
Bsu15I	ATCGAT	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	927
BsuRI	GGCC	2 cut(s)	445, 784
BsuTUI	ATCGAT	1 cut(s)	387
BtsCI	GGATG	3 cut(s)	26, 911, 1070
BtsI	GCAGTG	2 cut(s)	192, 1023
BtsIMutI	CAGTG	4 cut(s)	192, 652, 723, 1023
CaiI	CAGNNNCTG	1 cut(s)	191
CciI	TCATGA	1 cut(s)	369
ClaI	ATCGAT	1 cut(s)	387
DdeI	CTNAG	3 cut(s)	100, 715, 1023
DpnI	GATC	5 cut(s)	390, 473, 516, 654, 1069
DpnII	GATC	5 cut(s)	388, 471, 514, 652, 1067
DraIII	CACNNNGTG	1 cut(s)	1004
DrdI	GACNNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	782
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	2 cut(s)	203, 238
Eco130I	CCWWGG	1 cut(s)	837
Eco24I	GRGCYC	2 cut(s)	205, 240
Eco32I	GATATC	1 cut(s)	37
Eco53kI	GAGCTC	2 cut(s)	203, 238
Eco88I	CYCGRG	1 cut(s)	682
EcoICRI	GAGCTC	2 cut(s)	203, 238
EcoRII	CCWGG	3 cut(s)	205, 574, 944
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	837
EcoT22I	ATGCAT	1 cut(s)	558
EcoT38I	GRGCYC	2 cut(s)	205, 240
ErhI	CCWWGG	1 cut(s)	837
FbaI	TGATCA	2 cut(s)	471, 652
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	84, 753
FokI	GGATG	3 cut(s)	13, 898, 1057
FriOI	GRGCYC	2 cut(s)	205, 240
Fsp4HI	GCNGC	2 cut(s)	84, 753
FspBI	CTAG	2 cut(s)	351, 810
GluI	GCNGC	2 cut(s)	84, 753
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	445, 784
HapII	CCGG	1 cut(s)	214
HinfI	GANTC	8 cut(s)	498, 591, 704, 806, 833, 842, 949, 1009
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	7 cut(s)	272, 419, 444, 662, 698, 699, 1074
Hpy166II	GTNNAC	3 cut(s)	223, 271, 665
Hpy188I	TCNGA	5 cut(s)	200, 393, 463, 590, 640
Hpy188III	TCNNGA	5 cut(s)	214, 370, 401, 512, 1065
Hpy8I	GTNNAC	3 cut(s)	223, 271, 665
HpyAV	CCTTC	3 cut(s)	926, 1095, 1099
HpyCH4III	ACNGT	3 cut(s)	348, 376, 875
HpyCH4V	TGCA	7 cut(s)	4, 128, 277, 556, 602, 755, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 530, 641, 1037
HpyF3I	CTNAG	3 cut(s)	100, 715, 1023
Kpn2I	TCCGGA	1 cut(s)	213
Ksp22I	TGATCA	2 cut(s)	471, 652
Kzo9I	GATC	5 cut(s)	388, 471, 514, 652, 1067
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	3 cut(s)	208, 567, 759
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	5 cut(s)	35, 137, 589, 631, 817
MaeI	CTAG	2 cut(s)	351, 810
MaeIII	GTNAC	3 cut(s)	95, 450, 1062
MalI	GATC	5 cut(s)	390, 473, 516, 654, 1069
MboI	GATC	5 cut(s)	388, 471, 514, 652, 1067
MhlI	GDGCHC	3 cut(s)	205, 240, 683
MluCI	AATT	4 cut(s)	120, 248, 668, 745
MlyI	GAGTC	2 cut(s)	836, 943
MnlI	CCTC	8 cut(s)	145, 377, 488, 592, 780, 783, 1032, 1068
Mph1103I	ATGCAT	1 cut(s)	558
MroI	TCCGGA	1 cut(s)	213
MseI	TTAA	4 cut(s)	12, 288, 435, 765
MslI	CAYNNNNRTG	2 cut(s)	185, 974
MspA1I	CMGCKG	1 cut(s)	491
MspCI	CTTAAG	2 cut(s)	434, 764
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	3 cut(s)	207, 576, 946
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	3 cut(s)	207, 576, 946
MwoI	GCNNNNNNNGC	4 cut(s)	244, 530, 641, 1037
NdeII	GATC	5 cut(s)	388, 471, 514, 652, 1067
NlaIV	GGNNCC	2 cut(s)	580, 761
NmeAIII	GCCGAG	1 cut(s)	810
NmuCI	GTSAC	3 cut(s)	95, 450, 1062
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	3 cut(s)	80, 277, 1052
PagI	TCATGA	1 cut(s)	369
PciI	ACATGT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	324
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	6 cut(s)	498, 591, 704, 806, 833, 1009
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	85, 754
PleI	GAGTC	2 cut(s)	836, 943
PpsI	GAGTC	2 cut(s)	836, 943
PscI	ACATGT	1 cut(s)	76
Psp124BI	GAGCTC	2 cut(s)	205, 240
Psp6I	CCWGG	3 cut(s)	205, 574, 944
PspGI	CCWGG	3 cut(s)	205, 574, 944
PspN4I	GGNNCC	2 cut(s)	580, 761
PstNI	CAGNNNCTG	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	491
RseI	CAYNNNNRTG	2 cut(s)	185, 974
SacI	GAGCTC	2 cut(s)	205, 240
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	4 cut(s)	12, 288, 435, 765
SatI	GCNGC	2 cut(s)	84, 753
Sau3AI	GATC	5 cut(s)	388, 471, 514, 652, 1067
SchI	GAGTC	2 cut(s)	836, 943
ScrFI	CCNGG	3 cut(s)	207, 576, 946
SduI	GDGCHC	3 cut(s)	205, 240, 683
SfaNI	GCATC	5 cut(s)	35, 137, 589, 631, 817
SfcI	CTRYAG	1 cut(s)	858
SmiMI	CAYNNNNRTG	2 cut(s)	185, 974
SmlI	CTYRAG	2 cut(s)	434, 764
SmoI	CTYRAG	2 cut(s)	434, 764
Sse9I	AATT	4 cut(s)	120, 248, 668, 745
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	351, 810
SstI	GAGCTC	2 cut(s)	205, 240
StyD4I	CCNGG	3 cut(s)	205, 574, 944
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	3 cut(s)	348, 376, 875
TaqI	TCGA	2 cut(s)	152, 387
TasI	AATT	4 cut(s)	120, 248, 668, 745
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	6 cut(s)	498, 591, 704, 806, 833, 1009
Tru1I	TTAA	4 cut(s)	12, 288, 435, 765
Tru9I	TTAA	4 cut(s)	12, 288, 435, 765
TscAI	CASTG	4 cut(s)	192, 652, 723, 1023
TseFI	GTSAC	3 cut(s)	95, 450, 1062
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	3 cut(s)	95, 450, 1062
TspDTI	ATGAA	1 cut(s)	900
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	4 cut(s)	192, 652, 723, 1023
Vha464I	CTTAAG	2 cut(s)	434, 764
XceI	RCATGY	3 cut(s)	80, 277, 1052
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	2 cut(s)	351, 810
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.