pycom16g09420

Ankyrin repeats (3 copies)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
6315741 .. 6317657
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09420.1

Sequence Viewer

Length: 1434 bp
ATGCCACCATCTTACTTCCCTCTGAGGTGGGAGAGCACAGGAGACCAATGGTGGTATGCATCACCAATCGATTGGGCAGCAGCCAATGGCTTATATGATTTGGTCTGTGAGCTTCTTCACCTTGATACTAATCTTCTCATCAAGCTGACCTCACTACGCCGTATCCGCCGCCTCGAAACTGTCTGGGACGACGAGGCTCAGCTCGATGATGTTGCCAAATGCCGGTCACAAGTTGCCAAGAGGCTCCTCCACGAGTGCCAAATGCAGAGTGGACACAACTCTCTCGTCAGGGCCGGCTACGGCGGATGGCTTCTCTACACCGCCGCCTCAGCCGGGGATGTGGGGTTTGTCAGGGAGTTGCTGGACAGAGACCCTCTTCTTGTTTTTGGAGAAGGAGAGTATGGAGTCACTGACATATTCTATGCTGCAGCCAGGAGCAAGAACTCTGAGGTTTTCAGGCTGCTGCTTGATTTCTCTGTGTCGCCAAGGTTTAGTCTCAGCAATGGAGAATTGGAAGAGAGGTTGGGTGATATTACATCGGATTTCAAGTGGGAAATGATGAACCGGGCGGTTCATGCCGCTGCTAGAGGTGGCAATTTGGAGATTTTGAGGGACCTGCTTAGGGACTGTGAGGATGTATTGGTTTATAGAGATGCTCAGGGATCTACCATCTTGCATACAGGCTCTGGCAGAGGGCAGGTTGAGGTGGTTGAGTATCTAATAGCATTCTTTGATACCATCACAATTGTAGATAATCAAGGGAACACAGCTTTACATGTGGCCGCTTATAGGGGTCACTTGGCTGTGGTGGAGGTCCTAATTCGTGCATCTCCCTCATTAACCACTTTGTCAAACAACTATGGAGATACCTTTCTGCATTTGGCAGTGGCTGGTTTCAGAAGCCCTGGTTTCCGGAGACTGGACAAACAGATTGAGCTTATGAAGCAATTAGTATGTGGTGATACTGCGAACATGCAGGACGTTGTTAATGTTAAGAACAATGATGGACGAACTGCTCTTCACATGGCTGTAACCGAGAACATTCAATCTAATTTGGTGGAACTCCTCATGACTGTTCCATCAATTAATTTAAACATCCGTGATTCTGGCGGCATGACCCCTCTAGATATTCTTAAGCAAAGGCCAAAGTCAGCATCTTCGGAACTTCTGATCAAGCAATTGGTTTCAGCTGGAGGGATCTCTAATTATCAGGACCGTAAAGCAAGGAGTGGCCTTGTTTCCCATTTGAGAATGCAGGGTATTGGGAGCAGTCCGGGAACCTCTTTCAGAATTCCCGATGCAGAGATATTCTTATACACAGGCATTGACAATGCTTCTGATGCCAGTTGCGATCAGTCAAGCATGCAATTCAACACGTTCTCAGGTGAGCTAAGACAGTTTGGCTCACCCAACTCAGTAAACAATAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

52.91

Weight (kDa)

5.55

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 249 - 296 3.1e-07 Ankyrin repeats (3 copies)
Ank_5 PF13857 251 - 295 7.4e-08 Ankyrin repeats (many copies)
Ank PF00023 253 - 281 3.5e-06 Ankyrin repeat
Ank_2 PF12796 309 - 377 6.7e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 624, 688
AccIII TCCGGA 1 cut(s) 912
AciI CCGC 9 cut(s) 166, 169, 303, 321, 324, 569, 579, 783, 1110
AclWI GGATC 2 cut(s) 670, 1205
AcoI YGGCCR 1 cut(s) 780
AcsI RAATTY 1 cut(s) 1290
AfiI CCNNNNNNNGG 5 cut(s) 222, 333, 622, 789, 919
AflII CTTAAG 1 cut(s) 1133
AflIII ACRYGT 2 cut(s) 775, 1374
AgsI TTSAA 3 cut(s) 547, 1046, 1372
AjnI CCWGG 2 cut(s) 431, 904
AluBI AGCT 7 cut(s) 112, 145, 202, 770, 937, 1190, 1390
AluI AGCT 7 cut(s) 112, 145, 202, 770, 937, 1190, 1390
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 4 cut(s) 36, 363, 500, 910
AlwI GGATC 2 cut(s) 670, 1205
AlwNI CAGNNNCTG 2 cut(s) 686, 890
Aor13HI TCCGGA 1 cut(s) 912
AoxI GGCC 4 cut(s) 291, 780, 1142, 1231
ApeKI GCWGC 7 cut(s) 77, 80, 425, 428, 460, 463, 581
ApoI RAATTY 1 cut(s) 1290
AseI ATTAAT 1 cut(s) 1086
AspS9I GGNCC 4 cut(s) 291, 613, 814, 1213
AsuC2I CCSGG 3 cut(s) 334, 566, 1275
AsuHPI GGTGA 6 cut(s) 54, 110, 539, 971, 1397, 1398
AvaII GGWCC 3 cut(s) 613, 814, 1213
BauI CACGAG 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 328
BbvI GCAGC 7 cut(s) 89, 92, 412, 440, 447, 450, 568
BccI CCATC 6 cut(s) 16, 300, 677, 746, 998, 1087
BceAI ACGGC 2 cut(s) 144, 316
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 2 cut(s) 433, 906
BciVI GTATCC 1 cut(s) 173
BclI TGATCA 1 cut(s) 1170
BcnI CCSGG 3 cut(s) 334, 566, 1275
BcoDI GTCTC 4 cut(s) 36, 363, 500, 910
BfaI CTAG 2 cut(s) 585, 1124
BfmI CTRYAG 1 cut(s) 426
BfrI CTTAAG 1 cut(s) 1133
BfuAI ACCTGC 2 cut(s) 624, 688
BfuI GTATCC 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 198
Bme1390I CCNGG 5 cut(s) 334, 433, 566, 906, 1275
Bme18I GGWCC 3 cut(s) 613, 814, 1213
BmgT120I GGNCC 4 cut(s) 291, 613, 814, 1213
BmiI GGNNCC 3 cut(s) 245, 614, 1279
BmrFI CCNGG 5 cut(s) 334, 433, 566, 906, 1275
BmsI GCATC 6 cut(s) 68, 643, 836, 1163, 1288, 1330
BpmI CTGGAG 1 cut(s) 1212
Bpu10I CCTNAGC 3 cut(s) 328, 620, 657
Bpu1102I GCTNAGC 1 cut(s) 198
BpuMI CCSGG 3 cut(s) 334, 566, 1275
Bsa29I ATCGAT 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 36, 363
BsaJI CCNNGG 3 cut(s) 333, 485, 904
BsaWI WCCGGW 1 cut(s) 912
Bsc4I CCNNNNNNNGG 5 cut(s) 222, 333, 622, 789, 919
Bse118I RCCGGY 2 cut(s) 222, 293
Bse1I ACTGG 2 cut(s) 924, 1344
Bse3DI GCAATG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 912
BseBI CCWGG 2 cut(s) 433, 906
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 333, 485, 904
BseGI GGATG 4 cut(s) 311, 343, 640, 1095
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 5 cut(s) 222, 333, 622, 789, 919
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 8 cut(s) 14, 212, 342, 438, 511, 671, 1395, 1428
BseNI ACTGG 2 cut(s) 924, 1344
BseRI GAGGAG 2 cut(s) 236, 1055
BseXI GCAGC 7 cut(s) 89, 92, 412, 440, 447, 450, 568
BshFI GGCC 4 cut(s) 293, 782, 1144, 1233
BshVI ATCGAT 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 6 cut(s) 223, 294, 333, 565, 913, 1274
BslFI GGGAC 3 cut(s) 200, 626, 638
BslI CCNNNNNNNGG 5 cut(s) 222, 333, 622, 789, 919
BsmAI GTCTC 4 cut(s) 36, 363, 500, 910
BsmFI GGGAC 3 cut(s) 200, 626, 638
BsmI GAATGC 2 cut(s) 725, 1257
BsnI GGCC 4 cut(s) 293, 782, 1144, 1233
Bso31I GGTCTC 2 cut(s) 36, 363
Bsp1286I GDGCHC 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 912
Bsp143I GATC 4 cut(s) 662, 1170, 1197, 1351
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 9 cut(s) 166, 169, 303, 321, 324, 569, 579, 783, 1110
BspANI GGCC 4 cut(s) 293, 782, 1144, 1233
BspCNI CTCAG 8 cut(s) 15, 211, 341, 439, 510, 670, 1394, 1427
BspDI ATCGAT 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 912
BspHI TCATGA 1 cut(s) 1068
BspLI GGNNCC 3 cut(s) 245, 614, 1279
BspMAI CTGCAG 1 cut(s) 430
BspMI ACCTGC 2 cut(s) 624, 688
BspPI GGATC 2 cut(s) 670, 1205
BspQI GCTCTTC 1 cut(s) 1023
BspTI CTTAAG 1 cut(s) 1133
BspTNI GGTCTC 2 cut(s) 36, 363
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 2 cut(s) 222, 293
BsrI ACTGG 2 cut(s) 924, 1344
BssAI RCCGGY 2 cut(s) 222, 293
BssECI CCNNGG 3 cut(s) 333, 485, 904
BssMI GATC 4 cut(s) 662, 1170, 1197, 1351
BssSI CACGAG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 485
Bst2BI CACGAG 1 cut(s) 251
Bst2UI CCWGG 2 cut(s) 433, 906
Bst4CI ACNGT 5 cut(s) 181, 629, 1075, 1217, 1398
Bst6I CTCTTC 3 cut(s) 381, 510, 1023
BstAFI CTTAAG 1 cut(s) 1133
BstC8I GCNNGC 2 cut(s) 295, 1364
BstF5I GGATG 4 cut(s) 311, 343, 640, 1095
BstKTI GATC 4 cut(s) 665, 1173, 1200, 1354
BstMAI GTCTC 4 cut(s) 36, 363, 500, 910
BstMBI GATC 4 cut(s) 662, 1170, 1197, 1351
BstMWI GCNNNNNNNGC 5 cut(s) 165, 329, 575, 943, 1340
BstNI CCWGG 2 cut(s) 433, 906
BstNSI RCATGY 3 cut(s) 779, 976, 1366
BstSCI CCNGG 5 cut(s) 332, 431, 564, 904, 1273
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 7 cut(s) 89, 92, 412, 440, 447, 450, 568
BstX2I RGATCY 2 cut(s) 662, 1197
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 2 cut(s) 662, 1197
Bsu15I ATCGAT 1 cut(s) 69
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 4 cut(s) 293, 782, 1144, 1233
BsuTUI ATCGAT 1 cut(s) 69
BtsCI GGATG 4 cut(s) 311, 343, 640, 1095
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 2 cut(s) 408, 891
BveI ACCTGC 2 cut(s) 624, 688
Cac8I GCNNGC 2 cut(s) 295, 1364
CaiI CAGNNNCTG 2 cut(s) 686, 890
CciI TCATGA 1 cut(s) 1068
Cfr10I RCCGGY 2 cut(s) 222, 293
Cfr13I GGNCC 4 cut(s) 291, 613, 814, 1213
ClaI ATCGAT 1 cut(s) 69
CviAII CATG 7 cut(s) 575, 776, 973, 1024, 1069, 1114, 1363
DpnI GATC 4 cut(s) 664, 1172, 1199, 1353
DpnII GATC 4 cut(s) 662, 1170, 1197, 1351
DraI TTTAAA 1 cut(s) 1092
EaeI YGGCCR 1 cut(s) 780
Eam1104I CTCTTC 3 cut(s) 381, 510, 1023
EarI CTCTTC 3 cut(s) 381, 510, 1023
EciI GGCGGA 2 cut(s) 155, 318
Eco130I CCWWGG 1 cut(s) 485
Eco31I GGTCTC 2 cut(s) 36, 363
Eco47I GGWCC 3 cut(s) 613, 814, 1213
EcoO109I RGGNCCY 2 cut(s) 613, 814
EcoRI GAATTC 1 cut(s) 1290
EcoRII CCWGG 2 cut(s) 431, 904
EcoT14I CCWWGG 1 cut(s) 485
EcoT22I ATGCAT 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 7 cut(s) 578, 779, 976, 1027, 1072, 1117, 1366
FaqI GGGAC 3 cut(s) 200, 626, 638
FatI CATG 7 cut(s) 574, 775, 972, 1023, 1068, 1113, 1362
FbaI TGATCA 1 cut(s) 1170
FokI GGATG 4 cut(s) 318, 350, 647, 1082
FspBI CTAG 2 cut(s) 585, 1124
GsuI CTGGAG 1 cut(s) 1212
HaeIII GGCC 4 cut(s) 293, 782, 1144, 1233
HapII CCGG 6 cut(s) 223, 294, 333, 565, 913, 1274
Hin1II CATG 7 cut(s) 578, 779, 976, 1027, 1072, 1117, 1366
HinfI GANTC 2 cut(s) 405, 1103
HpaII CCGG 6 cut(s) 223, 294, 333, 565, 913, 1274
HphI GGTGA 6 cut(s) 54, 110, 539, 971, 1397, 1398
Hpy166II GTNNAC 2 cut(s) 272, 1420
Hpy188I TCNGA 8 cut(s) 24, 448, 541, 899, 1162, 1170, 1289, 1339
Hpy188III TCNNGA 5 cut(s) 913, 1069, 1124, 1211, 1295
Hpy8I GTNNAC 2 cut(s) 272, 1420
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 5 cut(s) 181, 629, 1075, 1217, 1398
HpyCH4IV ACGT 2 cut(s) 981, 1376
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 329, 575, 943, 1340
HpySE526I ACGT 2 cut(s) 981, 1376
Hsp92II CATG 7 cut(s) 578, 779, 976, 1027, 1072, 1117, 1366
Kpn2I TCCGGA 1 cut(s) 912
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 1170
Kzo9I GATC 4 cut(s) 662, 1170, 1197, 1351
LguI GCTCTTC 1 cut(s) 1023
LmnI GCTCC 3 cut(s) 249, 435, 1266
Lsp1109I GCAGC 7 cut(s) 89, 92, 412, 440, 447, 450, 568
LweI GCATC 6 cut(s) 68, 643, 836, 1163, 1288, 1330
MaeI CTAG 2 cut(s) 585, 1124
MaeII ACGT 2 cut(s) 981, 1376
MaeIII GTNAC 4 cut(s) 225, 406, 794, 1030
MalI GATC 4 cut(s) 664, 1172, 1199, 1353
MboI GATC 4 cut(s) 662, 1170, 1197, 1351
MboII GAAGA 6 cut(s) 107, 125, 368, 527, 1010, 1149
MfeI CAATTG 2 cut(s) 744, 1178
MflI RGATCY 2 cut(s) 662, 1197
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 414
Mph1103I ATGCAT 1 cut(s) 61
MroI TCCGGA 1 cut(s) 912
MroNI GCCGGC 1 cut(s) 293
MseI TTAA 6 cut(s) 839, 987, 993, 1086, 1091, 1134
MspA1I CMGCKG 2 cut(s) 581, 1190
MspCI CTTAAG 1 cut(s) 1133
MspI CCGG 6 cut(s) 223, 294, 333, 565, 913, 1274
MspR9I CCNGG 5 cut(s) 334, 433, 566, 906, 1275
MunI CAATTG 2 cut(s) 744, 1178
Mva1269I GAATGC 2 cut(s) 725, 1257
MvaI CCWGG 2 cut(s) 433, 906
MwoI GCNNNNNNNGC 5 cut(s) 165, 329, 575, 943, 1340
NaeI GCCGGC 1 cut(s) 295
NciI CCSGG 3 cut(s) 334, 566, 1275
NdeII GATC 4 cut(s) 662, 1170, 1197, 1351
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 7 cut(s) 578, 779, 976, 1027, 1072, 1117, 1366
NlaIV GGNNCC 3 cut(s) 245, 614, 1279
NmuCI GTSAC 3 cut(s) 225, 406, 794
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 3 cut(s) 779, 976, 1366
PaeI GCATGC 1 cut(s) 1366
PagI TCATGA 1 cut(s) 1068
PciI ACATGT 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 1023
PctI GAATGC 2 cut(s) 725, 1257
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 1103
PfoI TCCNGGA 1 cut(s) 1273
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PpuMI RGGWCCY 2 cut(s) 613, 814
PscI ACATGT 1 cut(s) 775
PshBI ATTAAT 1 cut(s) 1086
Psp5II RGGWCCY 2 cut(s) 613, 814
Psp6I CCWGG 2 cut(s) 431, 904
PspGI CCWGG 2 cut(s) 431, 904
PspN4I GGNNCC 3 cut(s) 245, 614, 1279
PspPI GGNCC 4 cut(s) 291, 613, 814, 1213
PspPPI RGGWCCY 2 cut(s) 613, 814
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 2 cut(s) 686, 890
PsuI RGATCY 2 cut(s) 662, 1197
PvuII CAGCTG 1 cut(s) 1190
SapI GCTCTTC 1 cut(s) 1023
SaqAI TTAA 6 cut(s) 839, 987, 993, 1086, 1091, 1134
Sau3AI GATC 4 cut(s) 662, 1170, 1197, 1351
Sau96I GGNCC 4 cut(s) 291, 613, 814, 1213
SchI GAGTC 1 cut(s) 414
ScrFI CCNGG 5 cut(s) 334, 433, 566, 906, 1275
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 6 cut(s) 68, 643, 836, 1163, 1288, 1330
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 3 cut(s) 613, 814, 1213
SmlI CTYRAG 1 cut(s) 1133
SmoI CTYRAG 1 cut(s) 1133
SphI GCATGC 1 cut(s) 1366
SsiI CCGC 9 cut(s) 166, 169, 303, 321, 324, 569, 579, 783, 1110
SspMI CTAG 2 cut(s) 585, 1124
StyD4I CCNGG 5 cut(s) 332, 431, 564, 904, 1273
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 5 cut(s) 181, 629, 1075, 1217, 1398
TaiI ACGT 2 cut(s) 984, 1379
TaqI TCGA 3 cut(s) 69, 174, 204
TauI GCSGC 5 cut(s) 171, 326, 581, 785, 1113
TfiI GAWTC 1 cut(s) 1103
Tru1I TTAA 6 cut(s) 839, 987, 993, 1086, 1091, 1134
Tru9I TTAA 6 cut(s) 839, 987, 993, 1086, 1091, 1134
TscAI CASTG 2 cut(s) 415, 891
TseFI GTSAC 3 cut(s) 225, 406, 794
TseI GCWGC 7 cut(s) 77, 80, 425, 428, 460, 463, 581
Tsp45I GTSAC 3 cut(s) 225, 406, 794
TspDTI ATGAA 3 cut(s) 563, 575, 956
TspGWI ACGGA 1 cut(s) 1088
TspRI CASTG 2 cut(s) 415, 891
Vha464I CTTAAG 1 cut(s) 1133
VpaK11BI GGWCC 3 cut(s) 613, 814, 1213
VspI ATTAAT 1 cut(s) 1086
XapI RAATTY 1 cut(s) 1290
XbaI TCTAGA 1 cut(s) 1123
XceI RCATGY 3 cut(s) 779, 976, 1366
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XspI CTAG 2 cut(s) 585, 1124
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.