Rorug02G0576900

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002201
Physical Location & Seq
Reverse (-)
70124948 .. 70125622
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0576900.1

Sequence Viewer

Length: 675 bp
ATGCAAGTGGGGATTGAACACTATGTCATGGAGGTAGAGGTTTCCAGTGAAGTTAAAGATAAGAGTCCTTATGTGTCGTTGGAAGACGAAGGCTATGAACATTGTGTTGTAGAGGATGTCGAAGCTCCAGTGGTGTTGGATGATGTCAAAGAGGATAATGGGGATATTGATTTGGTGCAGTATATGGCAGGTGAGAATAATGGTGGGATTATAGAGCCCACATTGGACATGGAGTTTGATTCGGAAGATGATGCGAGGAATTTCTATAATGCATATGCTAAACAAATTGGATTTAGTATTCGAGTGAATTCTTATTATCGTTCGAAGAAGGATAATTCGATTATATCTAGAGAGTTTTGTTGTTCCAAAGAGGGGTTTCGCAGAGTGAGACGTGCTAAGAATGATTCTAGTGATGGTGCAAAAAGGAGGCGTGCTAGGGCCATCACTAGGGAAGGTTGCAAGGCACTGATGACTGTGAGGAAGCGTGAGAATGAGAGATGGCATGTGGCTAAACTAGAGAAGAGCCATAATCATGAGTTGGTGACTCCTGCAATGCGGCATTTTCTTAGGTCACATAAGCAGGAATGTGATCCTAATCAGAGTTCGAGCAACTCCTTTAGTCCTCCTGGGATGTCTTTAGATGCTCCCATGAATGTCTTGAGTGATTGTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5

Protein Analysis

224

Amino Acids

25.59

Weight (kDa)

5.46

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 87 - 181 2.1e-29 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 179
AciI CCGC 1 cut(s) 556
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 2 cut(s) 259, 307
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 2 cut(s) 372, 447
AgsI TTSAA 1 cut(s) 17
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 584
AoxI GGCC 1 cut(s) 438
ApoI RAATTY 2 cut(s) 259, 307
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspS9I GGNCC 1 cut(s) 438
AsuHPI GGTGA 2 cut(s) 203, 553
AsuII TTCGAA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 3 cut(s) 407, 449, 492
BciT130I CCWGG 1 cut(s) 627
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 5 cut(s) 348, 408, 435, 447, 515
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 1 cut(s) 557
BlsI GCNGC 1 cut(s) 558
Bme1390I CCNGG 1 cut(s) 627
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 627
BmsI GCATC 2 cut(s) 241, 631
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 447
Bse1I ACTGG 2 cut(s) 45, 128
Bse3DI GCAATG 1 cut(s) 558
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 3 cut(s) 121, 145, 636
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 2 cut(s) 372, 447
BseMI GCAATG 1 cut(s) 558
BseNI ACTGG 2 cut(s) 45, 128
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 372, 447
BsmAI GTCTC 1 cut(s) 382
BsmBI CGTCTC 1 cut(s) 382
BsnI GGCC 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 589
BspACI CCGC 1 cut(s) 556
BspANI GGCC 1 cut(s) 440
BspHI TCATGA 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 1 cut(s) 584
BspQI GCTCTTC 1 cut(s) 515
BspT104I TTCGAA 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 558
BsrI ACTGG 2 cut(s) 45, 128
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 1 cut(s) 589
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 672
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 396, 566
BstF5I GGATG 3 cut(s) 121, 145, 636
BstKTI GATC 1 cut(s) 592
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 1 cut(s) 589
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 625
BstSNI TACGTA 1 cut(s) 672
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 440
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 3 cut(s) 121, 145, 636
BtsIMutI CAGTG 3 cut(s) 52, 135, 464
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 669
CviAII CATG 5 cut(s) 28, 229, 503, 533, 649
CviJI RGCY 6 cut(s) 93, 125, 217, 440, 509, 525
CviKI_1 RGCY 6 cut(s) 93, 125, 217, 440, 509, 525
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 2 cut(s) 396, 566
DpnI GATC 1 cut(s) 591
DpnII GATC 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco105I TACGTA 1 cut(s) 672
Eco24I GRGCYC 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 625
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 5 cut(s) 31, 232, 506, 536, 652
FatI CATG 5 cut(s) 27, 228, 502, 532, 648
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 557
FokI GGATG 3 cut(s) 128, 152, 643
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 557
FspBI CTAG 5 cut(s) 348, 408, 435, 447, 515
GluI GCNGC 1 cut(s) 557
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 440
Hin1II CATG 5 cut(s) 31, 232, 506, 536, 652
HinfI GANTC 4 cut(s) 64, 239, 404, 544
HphI GGTGA 2 cut(s) 203, 553
Hpy188I TCNGA 2 cut(s) 244, 600
Hpy188III TCNNGA 3 cut(s) 348, 533, 658
HpyAV CCTTC 3 cut(s) 83, 322, 446
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 2 cut(s) 391, 671
HpyCH4V TGCA 6 cut(s) 4, 178, 272, 419, 459, 551
HpyF3I CTNAG 2 cut(s) 396, 566
HpySE526I ACGT 2 cut(s) 391, 671
Hsp92II CATG 5 cut(s) 31, 232, 506, 536, 652
Kzo9I GATC 1 cut(s) 589
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 130, 649
LpnPI CCDG 7 cut(s) 58, 141, 174, 561, 566, 612, 639
LweI GCATC 2 cut(s) 241, 631
MaeI CTAG 5 cut(s) 348, 408, 435, 447, 515
MaeII ACGT 2 cut(s) 391, 671
MaeIII GTNAC 2 cut(s) 541, 570
MalI GATC 1 cut(s) 591
MboI GATC 1 cut(s) 589
MboII GAAGA 4 cut(s) 95, 257, 337, 532
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 4 cut(s) 259, 285, 307, 334
MlyI GAGTC 2 cut(s) 73, 538
MmeI TCCRAC 2 cut(s) 60, 117
MnlI CCTC 9 cut(s) 25, 31, 106, 145, 249, 364, 420, 471, 633
Mph1103I ATGCAT 1 cut(s) 274
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 627
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 589
NlaIII CATG 5 cut(s) 31, 232, 506, 536, 652
NmuCI GTSAC 2 cut(s) 541, 570
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 323
PagI TCATGA 1 cut(s) 532
PaqCI CACCTGC 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 239, 404
PkrI GCNGC 1 cut(s) 558
PleI GAGTC 2 cut(s) 72, 538
PpsI GAGTC 2 cut(s) 72, 538
Ppu21I YACGTR 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspPI GGNCC 1 cut(s) 438
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 557
Sau3AI GATC 1 cut(s) 589
Sau96I GGNCC 1 cut(s) 438
SchI GAGTC 2 cut(s) 73, 538
ScrFI CCNGG 1 cut(s) 627
SduI GDGCHC 1 cut(s) 219
SetI ASST 8 cut(s) 36, 42, 127, 193, 394, 457, 572, 674
SfaNI GCATC 2 cut(s) 241, 631
SfuI TTCGAA 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
SnaBI TACGTA 1 cut(s) 672
Sse9I AATT 4 cut(s) 259, 285, 307, 334
SsiI CCGC 1 cut(s) 556
SspMI CTAG 5 cut(s) 348, 408, 435, 447, 515
StyD4I CCNGG 1 cut(s) 625
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 2 cut(s) 394, 674
TaqI TCGA 5 cut(s) 120, 301, 323, 338, 605
TasI AATT 4 cut(s) 259, 285, 307, 334
TauI GCSGC 1 cut(s) 559
TfiI GAWTC 2 cut(s) 239, 404
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 3 cut(s) 52, 135, 471
TseFI GTSAC 2 cut(s) 541, 570
Tsp45I GTSAC 2 cut(s) 541, 570
TspDTI ATGAA 2 cut(s) 111, 665
TspRI CASTG 3 cut(s) 52, 135, 471
XapI RAATTY 2 cut(s) 259, 307
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XspI CTAG 5 cut(s) 348, 408, 435, 447, 515
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.