Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002201

Physical Location & Seq

Genomic Coordinates Reverse (-)

1599977 .. 1603891

Gene Structure 3915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGCCTCCTACATATTTTCCTCTCCGGTGGGAAAGCACCGGAGACCAATGGTGGTATGCTTCTCCGATTGACTATGCAGCCGCCAATGGACAGTATGACTTGGTCCGAGAGCTCATCCGCATCGACAGCAACCACCTCATCAAGCTCACATCTCTACGTAGAATTCGCCGCCTTGAGACTGTTTGGGATGATGAAGAGCAGTTCCATGGTGTAGCCAAGTGTCGTGCACATGTTGCTCGAAAGCTTTTCCATGAATGTGAGTCTAAACAGGGAAAGAACTCCCTCATTCGAGCTGGTTATGGTGGATGGCTCATTTACACAGCTGCCTCAGCTGGACAGCTTGGTTTTGTCCAAGAGCTGCTTGAGAGAAACCCTCTTCTTGTTTTCGGGGAAGGAGAGTTTGGCGTTACTGATATACTGTATGCTGCTGCTAGGAGCAAGAATGCTGAGGTTTTCAGGCTGCTGTTTGACTTTGCAGTTTCGCCGCGATTTTCAGGCAGAGGTGGGGAGTTGGAGGAACACATTGGGGAGATTCCTTGTGTTTATAAGAGGGAGATGGTTAATAGGGCGGTTCATGCTGCTGTCAGAGGAGGAAACTTGTTGGTTTTGAAGGAGCTTCTTTCGGATTGCAATGATGTTTTGGCTTATAGGGATGTTCAGGGATCCACTATTCTACATGCAGCAGCTGGAAAAGGACGGGTAGAGGTAGTGAAGTACCTTATAGCCGCATATGATATCATAAACTCCAAAGACCATCAGGGAAACACAGCATTGCATGTTGCAGCTTCGAGGGGCCAATTAGCTGCAGTGGAAGCTCTTCTATCTGCATTTCCTTCATCAATGATTTCTACAAAAAACAACTCTGGAGAAACATTTCTCCATAAGGTTATATCTGGCTTCCAAACTCCTGCCTTCCGTAGATTGGACCGACAGATTCATCTCCTGAAGAACTTGGTCTGTGGGAGAGTCTTTGACATTGAAGAAGTCATCAATGCCAAAAACAATGAAGGCCGGACTGCCCTTCACACAGCAATCATTGGCAATGTTCACTCTGACTTGGTGCAACTTCTGATGATGTCTCGATCAATTGATGTCAATGTCCGGGATGTAGATGGCATGACTGCACTTGATTACCTCAGGCAATGGCCTCGTTCTGCATCCTCGGATATACTAATTAGGCAGTTGATTTCGGCTGGGGGGATCTTTGGTTGTCAGGACTATTACAGTGCAAGAAAAGCCATTGCTTCACACTTAAAGATGCAAGGCGATGGAGGCAGTCCTGGAACATCGTTTAAAATCTCCGACACTGAAATCTTTTTGTATACAGGAGTTGAAAATGTACCAGTTGCTAGTGCTGGTCACCAGCACAAGGTTAGTATAGGAAGCAATTTATCTTCACCGGAACTAAATCCACGCAACACAACTGATGAGAACCAGAGCTCAATTAGTACTAAAAAGCCTTCAGGTTCTGTAAACCATGCAGCACAACGACTGAAACGTGCAATAGGGTGGCCCCGGATCAAAGAGAAGAAGCCTGAAAGATTCAAGAAATCAGTAGATTTTGGCAGCACTACTTCAGATGAGGCCCCCACACCACTTCGCCAGAGATTCTCAAAGGCCTCCTCATCACTTCCCAATAACAAAAGAACACTCGCAGTGAGGAGTAACCAATCAAGTCCAACCGCCAAGAAGAAATTTGCTTCGGGTTTAAGGCAGGGTGTAATGCAGGCAATCCCACACATAACCGTCCCAGGCCGTTCGCGCTCTAGCTCATTTTCGAAATCATCATCACTCTCTTCACCTAGTTCTCTAGATAAACAGAAAGGTGTTTGCATTGATACTGATGCCACTGGACCATCTTGGTCCAATCAAGTAGATGATGATGACACCCCAAATTTGGGTAAACAAGGCAGCCTTAACAGAAGGTTGAGGAGGCATTACTTCTGTTTTGGGGCATCAGGCCTATCTGTGAAGCACCCGGTTAGCAGGCAACATCAGAACCAAAGCTTCAAGCCTCCTCCTGTTATTTCAGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5

Protein Analysis

679

Amino Acids

74.81

Weight (kDa)

9.57

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	192 - 275	2.7e-15	Ankyrin repeats (3 copies)
Ank_5	PF13857	330 - 378	5.4e-07	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01750 AT3G01750
fragaria_vesca	FvH4_4g24410 FvH4_4g24410 FvH4_4g24410 FvH4_6g52800 FvH4_6g52800
malus_domestica	MD09G1016700.v1.1 MD13G1111600.v1.1 MD16G1111200.v1.1 MD17G1017100.v1.1
prunus_persica	Prupe.1G233900_v2.0.a1 Prupe.3G300800_v2.0.a1 Prupe.3G300800_v2.0.a1
pyrus_communis	pycom111g01360 pycom13g09690 pycom16g09420 pycom17g01380
rosa_chinensis	RchiOBHm_Chr2g0174421 RchiOBHm_Chr4g0431261
rosa_laevigata	RLG00000006915 RLG00000022264
rosa_multiflora	Rmu_co8370771.1_g000001 Rmu_sc0002637.1_g000004 Rmu_sc0003649.1_g000028
rosa_roxburghii	Rroxscaffold_2G00078230 Rroxscaffold_5G00372800
rosa_rugosa	Rorug02G0576600 Rorug02G0576700 Rorug02G0576800 Rorug02G0576900 Rorug02G0577000 Rorug04G0249700
rosa_samantha	Rh2AG657800 Rh2BG668900 Rh2CG631800 Rh2DG682400 Rh4AG305600 Rh4BG313000 Rh4CG329200 Rh4DG309400
rosa_wichuraiana	Rw2G053880 Rw4G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	1322
AccII	CGCG	2 cut(s)	487, 1762
AciI	CCGC	7 cut(s)	81, 118, 169, 485, 569, 726, 1683
AclWI	GGATC	4 cut(s)	657, 670, 1208, 1526
AcsI	RAATTY	3 cut(s)	162, 1694, 1894
AcuI	CTGAAG	3 cut(s)	965, 1446, 1560
AfaI	GTAC	3 cut(s)	716, 1341, 1450
AfiI	CCNNNNNNNGG	4 cut(s)	922, 1369, 1897, 1898
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	610, 980, 1334, 1546, 2011
AjnI	CCWGG	2 cut(s)	1279, 1750
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
Alw21I	GWGCWC	3 cut(s)	114, 229, 1442
Alw26I	GTCTC	3 cut(s)	36, 170, 1083
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	4 cut(s)	657, 670, 1208, 1526
AlwNI	CAGNNNCTG	2 cut(s)	686, 1469
AoxI	GGCC	8 cut(s)	793, 1009, 1145, 1511, 1584, 1617, 1753, 1960
ApaLI	GTGCAC	1 cut(s)	225
ApoI	RAATTY	3 cut(s)	162, 1694, 1894
Asp700I	GAANNNNTTC	2 cut(s)	816, 873
AspLEI	GCGC	1 cut(s)	1764
AspS9I	GGNCC	7 cut(s)	103, 793, 925, 1512, 1585, 1853, 1863
AsuC2I	CCSGG	3 cut(s)	1103, 1516, 1979
AsuHPI	GGTGA	3 cut(s)	1352, 1389, 1791
AsuII	TTCGAA	1 cut(s)	1778
AvaII	GGWCC	4 cut(s)	103, 925, 1853, 1863
AxyI	CCTNAGG	1 cut(s)	1136
BaeGI	GKGCMC	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	662
BanII	GRGCYC	2 cut(s)	114, 1442
Bbv12I	GWGCWC	3 cut(s)	114, 229, 1442
BbvCI	CCTCAGC	2 cut(s)	328, 447
BccI	CCATC	6 cut(s)	300, 550, 762, 1106, 1262, 1864
BceAI	ACGGC	1 cut(s)	1740
BcgI	CGANNNNNNTGC	2 cut(s)	1130, 1164
BciT130I	CCWGG	2 cut(s)	1281, 1752
BcnI	CCSGG	3 cut(s)	1103, 1516, 1979
BcoDI	GTCTC	3 cut(s)	36, 170, 1083
BfaI	CTAG	5 cut(s)	432, 1350, 1767, 1803, 1811
BfmI	CTRYAG	1 cut(s)	804
BmcAI	AGTACT	1 cut(s)	1450
Bme1390I	CCNGG	5 cut(s)	1103, 1281, 1516, 1752, 1979
Bme18I	GGWCC	4 cut(s)	103, 925, 1853, 1863
BmgT120I	GGNCC	7 cut(s)	103, 793, 925, 1512, 1585, 1853, 1863
BmiI	GGNNCC	4 cut(s)	664, 794, 1514, 1587
BmrFI	CCNGG	5 cut(s)	1103, 1281, 1516, 1752, 1979
BmsI	GCATC	5 cut(s)	129, 1166, 1248, 1834, 1964
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
BpmI	CTGGAG	1 cut(s)	885
Bpu10I	CCTNAGC	2 cut(s)	328, 447
Bpu14I	TTCGAA	1 cut(s)	1778
BpuEI	CTTGAG	2 cut(s)	194, 383
BpuMI	CCSGG	3 cut(s)	1103, 1516, 1979
BsaAI	YACGTR	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	205, 1161, 1514, 1750
BsaWI	WCCGGW	3 cut(s)	24, 38, 1399
Bsc4I	CCNNNNNNNGG	4 cut(s)	922, 1369, 1897, 1898
Bse1I	ACTGG	2 cut(s)	1343, 1855
Bse21I	CCTNAGG	1 cut(s)	1136
Bse3DI	GCAATG	5 cut(s)	637, 770, 1048, 1148, 1239
BseBI	CCWGG	2 cut(s)	1281, 1752
BseDI	CCNNGG	4 cut(s)	205, 1161, 1514, 1750
BseGI	GGATG	6 cut(s)	114, 193, 311, 658, 1111, 1157
BseLI	CCNNNNNNNGG	4 cut(s)	922, 1369, 1897, 1898
BseMI	GCAATG	5 cut(s)	637, 770, 1048, 1148, 1239
BseMII	CTCAG	3 cut(s)	342, 438, 1150
BseNI	ACTGG	2 cut(s)	1343, 1855
BseRI	GAGGAG	5 cut(s)	603, 1612, 1675, 1945, 2007
BseSI	GKGCMC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	1193
BsgI	GTGCAG	1 cut(s)	1107
Bsh1236I	CGCG	2 cut(s)	487, 1762
BshFI	GGCC	8 cut(s)	795, 1011, 1147, 1513, 1586, 1619, 1755, 1962
BsiHKAI	GWGCWC	3 cut(s)	114, 229, 1442
BsiSI	CCGG	7 cut(s)	25, 39, 1012, 1102, 1400, 1516, 1979
BslFI	GGGAC	1 cut(s)	1733
BslI	CCNNNNNNNGG	4 cut(s)	922, 1369, 1897, 1898
BsmAI	GTCTC	3 cut(s)	36, 170, 1083
BsmFI	GGGAC	1 cut(s)	1733
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	8 cut(s)	795, 1011, 1147, 1513, 1586, 1619, 1755, 1962
Bso31I	GGTCTC	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	1778
Bsp1286I	GDGCHC	3 cut(s)	114, 229, 1442
Bsp143I	GATC	4 cut(s)	662, 1082, 1200, 1518
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	7 cut(s)	81, 118, 169, 485, 569, 726, 1683
BspANI	GGCC	8 cut(s)	795, 1011, 1147, 1513, 1586, 1619, 1755, 1962
BspCNI	CTCAG	3 cut(s)	341, 439, 1149
BspFNI	CGCG	2 cut(s)	487, 1762
BspLI	GGNNCC	4 cut(s)	664, 794, 1514, 1587
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	4 cut(s)	657, 670, 1208, 1526
BspQI	GCTCTTC	2 cut(s)	189, 822
BspT104I	TTCGAA	1 cut(s)	1778
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	5 cut(s)	637, 770, 1048, 1148, 1239
BsrI	ACTGG	2 cut(s)	1343, 1855
BssECI	CCNNGG	4 cut(s)	205, 1161, 1514, 1750
BssMI	GATC	4 cut(s)	662, 1082, 1200, 1518
BssNAI	GTATAC	1 cut(s)	1323
BssT1I	CCWWGG	1 cut(s)	205
Bst1107I	GTATAC	1 cut(s)	1323
Bst2UI	CCWGG	2 cut(s)	1281, 1752
Bst4CI	ACNGT	5 cut(s)	93, 181, 420, 1226, 1747
Bst6I	CTCTTC	4 cut(s)	189, 381, 822, 1801
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	1778
BstC8I	GCNNGC	2 cut(s)	1728, 1988
BstDEI	CTNAG	3 cut(s)	328, 447, 1136
BstDSI	CCRYGG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	1358
BstF5I	GGATG	6 cut(s)	114, 193, 311, 658, 1111, 1157
BstFNI	CGCG	2 cut(s)	487, 1762
BstHHI	GCGC	1 cut(s)	1764
BstKTI	GATC	4 cut(s)	665, 1085, 1203, 1521
BstMAI	GTCTC	3 cut(s)	36, 170, 1083
BstMBI	GATC	4 cut(s)	662, 1082, 1200, 1518
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 233, 329, 575, 812, 1235, 1272, 1761
BstNI	CCWGG	2 cut(s)	1281, 1752
BstNSI	RCATGY	3 cut(s)	233, 680, 779
BstPI	GGTNACC	1 cut(s)	1358
BstSCI	CCNGG	5 cut(s)	1101, 1279, 1514, 1750, 1977
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	229
BstSNI	TACGTA	1 cut(s)	158
BstUI	CGCG	2 cut(s)	487, 1762
BstX2I	RGATCY	2 cut(s)	662, 1200
BstYI	RGATCY	2 cut(s)	662, 1200
BstZ17I	GTATAC	1 cut(s)	1323
Bsu36I	CCTNAGG	1 cut(s)	1136
BsuRI	GGCC	8 cut(s)	795, 1011, 1147, 1513, 1586, 1619, 1755, 1962
BtgI	CCRYGG	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	1281
BtsCI	GGATG	6 cut(s)	114, 193, 311, 658, 1111, 1157
BtsI	GCAGTG	2 cut(s)	813, 1662
BtsIMutI	CAGTG	6 cut(s)	813, 1231, 1305, 1662, 1848, 2037
Cac8I	GCNNGC	2 cut(s)	1728, 1988
CaiI	CAGNNNCTG	2 cut(s)	686, 1469
CfoI	GCGC	1 cut(s)	1764
Cfr13I	GGNCC	7 cut(s)	103, 793, 925, 1512, 1585, 1853, 1863
Csp6I	GTAC	3 cut(s)	715, 1340, 1449
CviAII	CATG	8 cut(s)	206, 230, 251, 575, 677, 776, 1117, 1478
CviQI	GTAC	3 cut(s)	715, 1340, 1449
DdeI	CTNAG	3 cut(s)	328, 447, 1136
DpnI	GATC	4 cut(s)	664, 1084, 1202, 1520
DpnII	GATC	4 cut(s)	662, 1082, 1200, 1518
DraI	TTTAAA	1 cut(s)	1294
Eam1104I	CTCTTC	4 cut(s)	189, 381, 822, 1801
EarI	CTCTTC	4 cut(s)	189, 381, 822, 1801
Ecl136II	GAGCTC	2 cut(s)	112, 1440
Eco105I	TACGTA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	205
Eco147I	AGGCCT	2 cut(s)	1619, 1962
Eco24I	GRGCYC	2 cut(s)	114, 1442
Eco31I	GGTCTC	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	4 cut(s)	103, 925, 1853, 1863
Eco53kI	GAGCTC	2 cut(s)	112, 1440
Eco57I	CTGAAG	3 cut(s)	965, 1446, 1560
Eco81I	CCTNAGG	1 cut(s)	1136
Eco91I	GGTNACC	1 cut(s)	1358
EcoICRI	GAGCTC	2 cut(s)	112, 1440
EcoO109I	RGGNCCY	1 cut(s)	1585
EcoO65I	GGTNACC	1 cut(s)	1358
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	1279, 1750
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	205
EcoT38I	GRGCYC	2 cut(s)	114, 1442
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	8 cut(s)	209, 233, 254, 578, 680, 779, 1120, 1481
FalI	AAGNNNNNCTT	4 cut(s)	345, 377, 1899, 1931
FaqI	GGGAC	1 cut(s)	1733
FatI	CATG	8 cut(s)	205, 229, 250, 574, 676, 775, 1116, 1477
FauNDI	CATATG	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	1322
FokI	GGATG	6 cut(s)	101, 200, 318, 665, 1118, 1144
FriOI	GRGCYC	2 cut(s)	114, 1442
FspBI	CTAG	5 cut(s)	432, 1350, 1767, 1803, 1811
GlaI	GCGC	1 cut(s)	1763
GsaI	CCCAGC	1 cut(s)	1197
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	8 cut(s)	795, 1011, 1147, 1513, 1586, 1619, 1755, 1962
HapII	CCGG	7 cut(s)	25, 39, 1012, 1102, 1400, 1516, 1979
HhaI	GCGC	1 cut(s)	1764
Hin1II	CATG	8 cut(s)	209, 233, 254, 578, 680, 779, 1120, 1481
Hin6I	GCGC	1 cut(s)	1762
HinP1I	GCGC	1 cut(s)	1762
HindIII	AAGCTT	2 cut(s)	242, 2005
HinfI	GANTC	6 cut(s)	260, 532, 934, 966, 1542, 1608
HpaII	CCGG	7 cut(s)	25, 39, 1012, 1102, 1400, 1516, 1979
HphI	GGTGA	3 cut(s)	1352, 1389, 1791
Hpy166II	GTNNAC	5 cut(s)	227, 1048, 1323, 1474, 1904
Hpy188III	TCNNGA	6 cut(s)	864, 943, 1080, 1214, 1546, 1811
Hpy8I	GTNNAC	5 cut(s)	227, 1048, 1323, 1474, 1904
HpyAV	CCTTC	8 cut(s)	386, 604, 843, 922, 1001, 1031, 1470, 1917
HpyCH4III	ACNGT	5 cut(s)	93, 181, 420, 1226, 1747
HpyCH4IV	ACGT	2 cut(s)	157, 1498
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 233, 329, 575, 812, 1235, 1272, 1761
HpyF3I	CTNAG	3 cut(s)	328, 447, 1136
HpySE526I	ACGT	2 cut(s)	157, 1498
Hsp92II	CATG	8 cut(s)	209, 233, 254, 578, 680, 779, 1120, 1481
HspAI	GCGC	1 cut(s)	1762
Kzo9I	GATC	4 cut(s)	662, 1082, 1200, 1518
LguI	GCTCTTC	2 cut(s)	189, 822
LmnI	GCTCC	2 cut(s)	435, 613
LweI	GCATC	5 cut(s)	129, 1166, 1248, 1834, 1964
MaeI	CTAG	5 cut(s)	432, 1350, 1767, 1803, 1811
MaeII	ACGT	2 cut(s)	157, 1498
MaeIII	GTNAC	3 cut(s)	406, 1358, 1664
MalI	GATC	4 cut(s)	664, 1084, 1202, 1520
MboI	GATC	4 cut(s)	662, 1082, 1200, 1518
MboII	GAAGA	9 cut(s)	206, 368, 809, 958, 992, 1386, 1540, 1702, 1788
MfeI	CAATTG	1 cut(s)	1086
MflI	RGATCY	2 cut(s)	662, 1200
MhlI	GDGCHC	3 cut(s)	114, 229, 1442
MluCI	AATT	8 cut(s)	162, 797, 1086, 1173, 1387, 1443, 1694, 1894
MlyI	GAGTC	2 cut(s)	269, 975
MmeI	TCCRAC	3 cut(s)	492, 1326, 1703
MroXI	GAANNNNTTC	2 cut(s)	816, 873
MseI	TTAA	6 cut(s)	561, 1253, 1293, 1709, 1917, 2038
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	3 cut(s)	323, 332, 686
MspI	CCGG	7 cut(s)	25, 39, 1012, 1102, 1400, 1516, 1979
MspR9I	CCNGG	5 cut(s)	1103, 1281, 1516, 1752, 1979
MunI	CAATTG	1 cut(s)	1086
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	1281, 1752
MvnI	CGCG	2 cut(s)	487, 1762
MwoI	GCNNNNNNNGC	8 cut(s)	126, 233, 329, 575, 812, 1235, 1272, 1761
NciI	CCSGG	3 cut(s)	1103, 1516, 1979
NcoI	CCATGG	1 cut(s)	205
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	4 cut(s)	662, 1082, 1200, 1518
NlaIII	CATG	8 cut(s)	209, 233, 254, 578, 680, 779, 1120, 1481
NlaIV	GGNNCC	4 cut(s)	664, 794, 1514, 1587
NmuCI	GTSAC	1 cut(s)	1358
NspI	RCATGY	3 cut(s)	233, 680, 779
NspV	TTCGAA	1 cut(s)	1778
PceI	AGGCCT	2 cut(s)	1619, 1962
PciI	ACATGT	1 cut(s)	229
PciSI	GCTCTTC	2 cut(s)	189, 822
PcsI	WCGNNNNNNNCGW	1 cut(s)	1495
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	2 cut(s)	816, 873
PfeI	GAWTC	4 cut(s)	532, 934, 1542, 1608
PflFI	GACNNNGTC	1 cut(s)	101
PfoI	TCCNGGA	2 cut(s)	1101, 1279
PleI	GAGTC	2 cut(s)	268, 974
PpsI	GAGTC	2 cut(s)	268, 974
Ppu21I	YACGTR	1 cut(s)	158
PscI	ACATGT	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	546
Psp124BI	GAGCTC	2 cut(s)	114, 1442
Psp6I	CCWGG	2 cut(s)	1279, 1750
PspEI	GGTNACC	1 cut(s)	1358
PspFI	CCCAGC	1 cut(s)	1193
PspGI	CCWGG	2 cut(s)	1279, 1750
PspN4I	GGNNCC	4 cut(s)	664, 794, 1514, 1587
PspPI	GGNCC	7 cut(s)	103, 793, 925, 1512, 1585, 1853, 1863
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	2 cut(s)	686, 1469
PsuI	RGATCY	2 cut(s)	662, 1200
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	3 cut(s)	323, 332, 686
RsaI	GTAC	3 cut(s)	716, 1341, 1450
RsaNI	GTAC	3 cut(s)	715, 1340, 1449
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	2 cut(s)	114, 1442
SapI	GCTCTTC	2 cut(s)	189, 822
SaqAI	TTAA	6 cut(s)	561, 1253, 1293, 1709, 1917, 2038
Sau3AI	GATC	4 cut(s)	662, 1082, 1200, 1518
Sau96I	GGNCC	7 cut(s)	103, 793, 925, 1512, 1585, 1853, 1863
ScaI	AGTACT	1 cut(s)	1450
SchI	GAGTC	2 cut(s)	269, 975
ScrFI	CCNGG	5 cut(s)	1103, 1281, 1516, 1752, 1979
SduI	GDGCHC	3 cut(s)	114, 229, 1442
SfaNI	GCATC	5 cut(s)	129, 1166, 1248, 1834, 1964
SfcI	CTRYAG	1 cut(s)	804
SfuI	TTCGAA	1 cut(s)	1778
SinI	GGWCC	4 cut(s)	103, 925, 1853, 1863
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	2 cut(s)	173, 362
SmoI	CTYRAG	2 cut(s)	173, 362
SnaBI	TACGTA	1 cut(s)	158
Sse9I	AATT	8 cut(s)	162, 797, 1086, 1173, 1387, 1443, 1694, 1894
SseBI	AGGCCT	2 cut(s)	1619, 1962
SsiI	CCGC	7 cut(s)	81, 118, 169, 485, 569, 726, 1683
SspMI	CTAG	5 cut(s)	432, 1350, 1767, 1803, 1811
SstI	GAGCTC	2 cut(s)	114, 1442
StuI	AGGCCT	2 cut(s)	1619, 1962
StyD4I	CCNGG	5 cut(s)	1101, 1279, 1514, 1750, 1977
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	5 cut(s)	93, 181, 420, 1226, 1747
TaiI	ACGT	2 cut(s)	160, 1501
TaqI	TCGA	6 cut(s)	123, 238, 289, 788, 1081, 1778
TaqII	GACCGA	1 cut(s)	942
TasI	AATT	8 cut(s)	162, 797, 1086, 1173, 1387, 1443, 1694, 1894
TatI	WGTACW	1 cut(s)	1448
TauI	GCSGC	4 cut(s)	83, 171, 487, 728
TfiI	GAWTC	4 cut(s)	532, 934, 1542, 1608
Tru1I	TTAA	6 cut(s)	561, 1253, 1293, 1709, 1917, 2038
Tru9I	TTAA	6 cut(s)	561, 1253, 1293, 1709, 1917, 2038
TscAI	CASTG	6 cut(s)	813, 1231, 1312, 1662, 1855, 2037
TseFI	GTSAC	1 cut(s)	1358
Tsp45I	GTSAC	1 cut(s)	1358
TspDTI	ATGAA	6 cut(s)	207, 267, 563, 825, 926, 1020
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	6 cut(s)	813, 1231, 1312, 1662, 1855, 2037
Tth111I	GACNNNGTC	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	225
VpaK11BI	GGWCC	4 cut(s)	103, 925, 1853, 1863
XapI	RAATTY	3 cut(s)	162, 1694, 1894
XbaI	TCTAGA	1 cut(s)	1810
XceI	RCATGY	3 cut(s)	233, 680, 779
XmiI	GTMKAC	1 cut(s)	1322
XmnI	GAANNNNTTC	2 cut(s)	816, 873
XspI	CTAG	5 cut(s)	432, 1350, 1767, 1803, 1811
ZrmI	AGTACT	1 cut(s)	1450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.