Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002201

Physical Location & Seq

Genomic Coordinates Forward (+)

70108665 .. 70110394

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0576600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCCTCTCACTACCACCACCCTCACCCTCACCCTCACCCTCACCCTCACCACCACCAAAACCACCCTCCCACCACCACTTGCTGCTGCGCCACCTCCTACTCCTCCTGCCACTGCACCCAATCCCACCACCCCTACCCTCCACCACACCCACATCAACCATCCCCAGACCCACTTCTCCAAGCCATTGCCTCTCAACTCCTCATTTCTAATCCCCCAGATCCCTACCTCCATCCCCACCAAAACCCTCACAAAACCCACAAATCCCAACTCCCAAAACACCGTTCCCACATTCAAGAACAGCAAGAACAACAACTTCACTCTCTTCTTTCCAGAATCGAAGCCCTAGAAGCTTCTCTACACCACCACTCTGCCAATCGCGCTCGGTCTTCGGATTCTTACTCTCTCAGAGACTATGCTGCTCGGGTTATTCAGACCCATTTCCGGGCCTTCCTGGTTCGCCGATCAAGGACTCTCAGGCAGCTCAAAGACCTCGCCTTTATCAAGTCCTCTTTCGCCTCTCTCAAGTCGTCGGTTTCGAACCAGACCCAGTTCGACTTTCACTCCGTTTCTCAGAAAGCACTCGCTTTGCTTACCAAGCTCGACTCTATTCAGTGTGGTGATTCGATTGTTAGAGATGGGAAGAGGTCTATAAGTAGAGATTTAGTTCGGTTCTTAGAGTTTATCAAAGGGGTTGTTGTGAAAAGGCAGGTGATTTGCTTGAAACCAGTGAAGAATGTGAGGTCGAATGTGAGGTCTGTTCAAAATGTGAATAAGTCTAGGGGTTTGGGTAACAAATGTGGAGGTTTGGGGAGGGATCAGAGGGAGATGATTGGGAAATTGAAGGAGAGGATTGAGAAGATTCGCGGGTTTGCTAGAGTTTCAGAGAATGATGAGGAGGATGTGGAGCTGGAAGGGTTTCAACATGTCAGTGATGATGATGAAGAAAGTGTAGGTCAATATCGGAATGGGGCAGCGGTGAAGAGGCATGGGTTTCAACCTAAGGTGAAGAAGAGTGTGAGCTTTGCAGAGGATGGGAATGTGTTTAGGGTCTTTAGCAACAGCGATGAGGCTATGTCAAGTGGGGATGGGAGTGATTCCAGTGATGATCACGGAGAGCGTGTTGAGAACTGTAGTGAAGTTGAGGATGTTAAGGGCTTTGCTCAGGAGACTGAGGATGATGATGAGGCGCACTTAGAAAATGGCGGATCACCGCAGACCAGTGATGCAGAAAGAAACCCAAGAGCCAGAATGACTCAGAGAAGAGGCCATGGTCAGGGTCAGAATGAGCATTTGTTGTTCTCCCCTCCTTTGCCTGTGAAGATGGATTCTAAAGATGTGGTGAAAAGAAACAAGGGTGTAAAGATTGTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5

Protein Analysis

458

Amino Acids

51.57

Weight (kDa)

8.75

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01750 AT3G01750
fragaria_vesca	FvH4_4g24410 FvH4_4g24410 FvH4_4g24410 FvH4_6g52800 FvH4_6g52800
malus_domestica	MD09G1016700.v1.1 MD13G1111600.v1.1 MD16G1111200.v1.1 MD17G1017100.v1.1
prunus_persica	Prupe.1G233900_v2.0.a1 Prupe.3G300800_v2.0.a1 Prupe.3G300800_v2.0.a1
pyrus_communis	pycom111g01360 pycom13g09690 pycom16g09420 pycom17g01380
rosa_chinensis	RchiOBHm_Chr2g0174421 RchiOBHm_Chr4g0431261
rosa_laevigata	RLG00000006915 RLG00000022264
rosa_multiflora	Rmu_co8370771.1_g000001 Rmu_sc0002637.1_g000004 Rmu_sc0003649.1_g000028
rosa_roxburghii	Rroxscaffold_2G00078230 Rroxscaffold_5G00372800
rosa_rugosa	Rorug02G0576600 Rorug02G0576700 Rorug02G0576800 Rorug02G0576900 Rorug02G0577000 Rorug04G0249700
rosa_samantha	Rh2AG657800 Rh2BG668900 Rh2CG631800 Rh2DG682400 Rh4AG305600 Rh4BG313000 Rh4CG329200 Rh4DG309400
rosa_wichuraiana	Rw2G053880 Rw4G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	700
Acc36I	ACCTGC	1 cut(s)	700
AccII	CGCG	2 cut(s)	381, 867
AciI	CCGC	4 cut(s)	867, 977, 1206, 1214
AclWI	GGATC	3 cut(s)	215, 825, 1216
AfiI	CCNNNNNNNGG	3 cut(s)	444, 445, 1276
AflIII	ACRYGT	1 cut(s)	925
AgsI	TTSAA	6 cut(s)	296, 724, 764, 844, 923, 998
AjnI	CCWGG	1 cut(s)	453
AjuI	GAANNNNNNNTTGG	2 cut(s)	268, 300
AluBI	AGCT	5 cut(s)	353, 484, 601, 910, 1023
AluI	AGCT	5 cut(s)	353, 484, 601, 910, 1023
Alw26I	GTCTC	2 cut(s)	405, 1163
AlwI	GGATC	3 cut(s)	215, 825, 1216
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	3 cut(s)	3, 447, 1267
ApeKI	GCWGC	5 cut(s)	84, 87, 419, 481, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
Asp700I	GAANNNNTTC	1 cut(s)	918
AspLEI	GCGC	3 cut(s)	92, 383, 1192
AspS9I	GGNCC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	446
AsuII	TTCGAA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	423
AxyI	CCTNAGG	1 cut(s)	1002
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	5 cut(s)	71, 74, 406, 493, 986
BccI	CCATC	6 cut(s)	169, 240, 632, 1028, 1082, 1318
BciT130I	CCWGG	1 cut(s)	455
BclI	TGATCA	1 cut(s)	1108
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	405, 1163
BfaI	CTAG	3 cut(s)	347, 780, 876
BfmI	CTRYAG	1 cut(s)	1132
BfuAI	ACCTGC	1 cut(s)	700
BisI	GCNGC	5 cut(s)	85, 88, 420, 482, 975
BlsI	GCNGC	5 cut(s)	86, 89, 421, 483, 976
Bme1390I	CCNGG	2 cut(s)	446, 455
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	446, 455
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	1216
BmuI	ACTGGG	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	1164
Bpu14I	TTCGAA	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	1270
BsaXI	ACNNNNNCTCC	4 cut(s)	548, 578, 1107, 1137
Bsc4I	CCNNNNNNNGG	3 cut(s)	444, 445, 1276
Bse1I	ACTGG	4 cut(s)	550, 728, 1101, 1221
Bse21I	CCTNAGG	1 cut(s)	1002
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	1270
BseGI	GGATG	7 cut(s)	161, 232, 907, 1039, 1093, 1153, 1183
BseLI	CCNNNNNNNGG	3 cut(s)	444, 445, 1276
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	6 cut(s)	421, 490, 587, 1164, 1178, 1271
BseNI	ACTGG	4 cut(s)	550, 728, 1101, 1221
BseRI	GAGGAG	3 cut(s)	94, 191, 911
BseXI	GCAGC	5 cut(s)	71, 74, 406, 493, 986
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	2 cut(s)	381, 867
BshFI	GGCC	3 cut(s)	5, 449, 1269
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	444, 445, 1276
BsmAI	GTCTC	2 cut(s)	405, 1163
BsnI	GGCC	3 cut(s)	5, 449, 1269
BsoBI	CYCGRG	1 cut(s)	423
Bsp119I	TTCGAA	1 cut(s)	539
Bsp143I	GATC	5 cut(s)	220, 464, 817, 1108, 1208
Bsp19I	CCATGG	1 cut(s)	1270
BspACI	CCGC	4 cut(s)	867, 977, 1206, 1214
BspANI	GGCC	3 cut(s)	5, 449, 1269
BspCNI	CTCAG	6 cut(s)	420, 489, 586, 1165, 1177, 1270
BspFNI	CGCG	2 cut(s)	381, 867
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	3 cut(s)	215, 825, 1216
BspT104I	TTCGAA	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	4 cut(s)	550, 728, 1101, 1221
BssECI	CCNNGG	1 cut(s)	1270
BssMI	GATC	5 cut(s)	220, 464, 817, 1108, 1208
BssT1I	CCWWGG	1 cut(s)	1270
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	284, 1133
Bst6I	CTCTTC	5 cut(s)	330, 638, 977, 1007, 1258
BstBI	TTCGAA	1 cut(s)	539
BstDEI	CTNAG	9 cut(s)	407, 476, 573, 676, 1002, 1164, 1173, 1195, 1257
BstDSI	CCRYGG	1 cut(s)	1270
BstF5I	GGATG	7 cut(s)	161, 232, 907, 1039, 1093, 1153, 1183
BstFNI	CGCG	2 cut(s)	381, 867
BstHHI	GCGC	3 cut(s)	92, 383, 1192
BstKTI	GATC	5 cut(s)	223, 467, 820, 1111, 1211
BstMAI	GTCTC	2 cut(s)	405, 1163
BstMBI	GATC	5 cut(s)	220, 464, 817, 1108, 1208
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 380, 598
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	2 cut(s)	444, 453
BstSFI	CTRYAG	1 cut(s)	1132
BstUI	CGCG	2 cut(s)	381, 867
BstV1I	GCAGC	5 cut(s)	71, 74, 406, 493, 986
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	1002
BsuRI	GGCC	3 cut(s)	5, 449, 1269
BtgI	CCRYGG	1 cut(s)	1270
BtgZI	GCGATG	1 cut(s)	1080
BtsCI	GGATG	7 cut(s)	161, 232, 907, 1039, 1093, 1153, 1183
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	6 cut(s)	112, 620, 735, 937, 1108, 1228
BveI	ACCTGC	1 cut(s)	700
CfoI	GCGC	3 cut(s)	92, 383, 1192
Cfr13I	GGNCC	1 cut(s)	447
CviAII	CATG	4 cut(s)	926, 989, 1271, 1374
DdeI	CTNAG	9 cut(s)	407, 476, 573, 676, 1002, 1164, 1173, 1195, 1257
DpnI	GATC	5 cut(s)	222, 466, 819, 1110, 1210
DpnII	GATC	5 cut(s)	220, 464, 817, 1108, 1208
Eam1104I	CTCTTC	5 cut(s)	330, 638, 977, 1007, 1258
EarI	CTCTTC	5 cut(s)	330, 638, 977, 1007, 1258
EciI	GGCGGA	1 cut(s)	1221
Eco130I	CCWWGG	1 cut(s)	1270
Eco81I	CCTNAGG	1 cut(s)	1002
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	1270
ErhI	CCWWGG	1 cut(s)	1270
FaeI	CATG	4 cut(s)	929, 992, 1274, 1377
FaiI	YATR	7 cut(s)	417, 653, 927, 990, 1076, 1272, 1375
FatI	CATG	4 cut(s)	925, 988, 1270, 1373
FauI	CCCGC	1 cut(s)	860
FbaI	TGATCA	1 cut(s)	1108
Fnu4HI	GCNGC	5 cut(s)	85, 88, 420, 482, 975
FokI	GGATG	7 cut(s)	148, 219, 914, 1046, 1100, 1160, 1190
Fsp4HI	GCNGC	5 cut(s)	85, 88, 420, 482, 975
FspBI	CTAG	3 cut(s)	347, 780, 876
GlaI	GCGC	3 cut(s)	91, 382, 1191
GluI	GCNGC	5 cut(s)	85, 88, 420, 482, 975
HaeIII	GGCC	3 cut(s)	5, 449, 1269
HapII	CCGG	1 cut(s)	445
HhaI	GCGC	3 cut(s)	92, 383, 1192
Hin1II	CATG	4 cut(s)	929, 992, 1274, 1377
Hin6I	GCGC	3 cut(s)	90, 381, 1190
HinP1I	GCGC	3 cut(s)	90, 381, 1190
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	9 cut(s)	336, 395, 472, 605, 623, 862, 1097, 1255, 1328
HpaII	CCGG	1 cut(s)	445
Hpy188I	TCNGA	9 cut(s)	394, 410, 435, 576, 822, 886, 966, 1260, 1284
Hpy188III	TCNNGA	3 cut(s)	296, 333, 1166
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	3 cut(s)	460, 838, 908
HpyCH4III	ACNGT	2 cut(s)	284, 1133
HpyCH4V	TGCA	3 cut(s)	117, 1028, 1229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 380, 598
HpyF3I	CTNAG	9 cut(s)	407, 476, 573, 676, 1002, 1164, 1173, 1195, 1257
Hsp92II	CATG	4 cut(s)	929, 992, 1274, 1377
HspAI	GCGC	3 cut(s)	90, 381, 1190
Ksp22I	TGATCA	1 cut(s)	1108
Kzo9I	GATC	5 cut(s)	220, 464, 817, 1108, 1208
LmnI	GCTCC	1 cut(s)	907
Lsp1109I	GCAGC	5 cut(s)	71, 74, 406, 493, 986
LweI	GCATC	1 cut(s)	1216
MaeI	CTAG	3 cut(s)	347, 780, 876
MaeIII	GTNAC	2 cut(s)	791, 1369
MalI	GATC	5 cut(s)	222, 466, 819, 1110, 1210
MboI	GATC	5 cut(s)	220, 464, 817, 1108, 1208
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	1 cut(s)	839
MlyI	GAGTC	3 cut(s)	466, 599, 1249
MroXI	GAANNNNTTC	1 cut(s)	918
MseI	TTAA	1 cut(s)	1152
MslI	CAYNNNNRTG	1 cut(s)	930
MspA1I	CMGCKG	1 cut(s)	977
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	2 cut(s)	446, 455
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	2 cut(s)	381, 867
MwoI	GCNNNNNNNGC	3 cut(s)	350, 380, 598
NciI	CCSGG	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	1270
NdeII	GATC	5 cut(s)	220, 464, 817, 1108, 1208
NlaIII	CATG	4 cut(s)	929, 992, 1274, 1377
NmuCI	GTSAC	1 cut(s)	1369
NspI	RCATGY	1 cut(s)	929
NspV	TTCGAA	1 cut(s)	539
PaqCI	CACCTGC	1 cut(s)	700
PciI	ACATGT	1 cut(s)	925
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	6 cut(s)	336, 395, 623, 862, 1097, 1328
PkrI	GCNGC	5 cut(s)	86, 89, 421, 483, 976
PleI	GAGTC	3 cut(s)	466, 599, 1249
PpsI	GAGTC	3 cut(s)	466, 599, 1249
PscI	ACATGT	1 cut(s)	925
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	930
SaqAI	TTAA	1 cut(s)	1152
SatI	GCNGC	5 cut(s)	85, 88, 420, 482, 975
Sau3AI	GATC	5 cut(s)	220, 464, 817, 1108, 1208
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	3 cut(s)	466, 599, 1249
ScrFI	CCNGG	2 cut(s)	446, 455
SfaNI	GCATC	1 cut(s)	1216
SfcI	CTRYAG	1 cut(s)	1132
SfuI	TTCGAA	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	930
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	1 cut(s)	839
SsiI	CCGC	4 cut(s)	867, 977, 1206, 1214
SspMI	CTAG	3 cut(s)	347, 780, 876
StyD4I	CCNGG	2 cut(s)	444, 453
StyI	CCWWGG	1 cut(s)	1270
TaaI	ACNGT	2 cut(s)	284, 1133
TaqI	TCGA	6 cut(s)	339, 539, 555, 603, 626, 746
TaqII	GACCGA	1 cut(s)	375
TasI	AATT	1 cut(s)	839
TfiI	GAWTC	6 cut(s)	336, 395, 623, 862, 1097, 1328
Tru1I	TTAA	1 cut(s)	1152
Tru9I	TTAA	1 cut(s)	1152
TscAI	CASTG	6 cut(s)	119, 620, 735, 937, 1108, 1228
TseFI	GTSAC	1 cut(s)	1369
TseI	GCWGC	5 cut(s)	84, 87, 419, 481, 974
Tsp45I	GTSAC	1 cut(s)	1369
TspDTI	ATGAA	1 cut(s)	957
TspGWI	ACGGA	2 cut(s)	556, 1128
TspRI	CASTG	6 cut(s)	119, 620, 735, 937, 1108, 1228
XceI	RCATGY	1 cut(s)	929
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	3 cut(s)	347, 780, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.