Ankyrin repeats (many copies)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01750 AT3G01750 |
| fragaria_vesca | FvH4_4g24410 FvH4_4g24410 FvH4_4g24410 FvH4_6g52800 FvH4_6g52800 |
| malus_domestica | MD09G1016700.v1.1 MD13G1111600.v1.1 MD16G1111200.v1.1 MD17G1017100.v1.1 |
| prunus_persica | Prupe.1G233900_v2.0.a1 Prupe.3G300800_v2.0.a1 Prupe.3G300800_v2.0.a1 |
| pyrus_communis | pycom111g01360 pycom13g09690 pycom16g09420 pycom17g01380 |
| rosa_chinensis | RchiOBHm_Chr2g0174421 RchiOBHm_Chr4g0431261 |
| rosa_laevigata | RLG00000006915 RLG00000022264 |
| rosa_multiflora | Rmu_co8370771.1_g000001 Rmu_sc0002637.1_g000004 Rmu_sc0003649.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00078230 Rroxscaffold_5G00372800 |
| rosa_rugosa | Rorug02G0576600 Rorug02G0576700 Rorug02G0576800 Rorug02G0576900 Rorug02G0577000 Rorug04G0249700 |
| rosa_samantha | Rh2AG657800 Rh2BG668900 Rh2CG631800 Rh2DG682400 Rh4AG305600 Rh4BG313000 Rh4CG329200 Rh4DG309400 |
| rosa_wichuraiana | Rw2G053880 Rw4G026570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 546 |
| AccI | GTMKAC | 1 cut(s) | 1322 |
| AccII | CGCG | 1 cut(s) | 1762 |
| AciI | CCGC | 7 cut(s) | 81, 118, 169, 569, 680, 726, 1683 |
| AclWI | GGATC | 4 cut(s) | 657, 670, 1208, 1526 |
| AcsI | RAATTY | 3 cut(s) | 162, 1694, 1894 |
| AcuI | CTGAAG | 3 cut(s) | 965, 1446, 1560 |
| AfaI | GTAC | 3 cut(s) | 716, 1341, 1450 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 922, 1369, 1898 |
| AflIII | ACRYGT | 1 cut(s) | 229 |
| AgsI | TTSAA | 4 cut(s) | 610, 980, 1334, 1546 |
| AjnI | CCWGG | 3 cut(s) | 756, 1279, 1750 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 384, 416 |
| Alw21I | GWGCWC | 3 cut(s) | 114, 229, 1442 |
| Alw26I | GTCTC | 4 cut(s) | 36, 170, 834, 1083 |
| Alw44I | GTGCAC | 1 cut(s) | 225 |
| AlwI | GGATC | 4 cut(s) | 657, 670, 1208, 1526 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1469 |
| AoxI | GGCC | 6 cut(s) | 1009, 1145, 1511, 1617, 1753, 1960 |
| ApaLI | GTGCAC | 1 cut(s) | 225 |
| ApoI | RAATTY | 3 cut(s) | 162, 1694, 1894 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 816, 873, 1387 |
| AspLEI | GCGC | 1 cut(s) | 1764 |
| AspS9I | GGNCC | 4 cut(s) | 103, 1512, 1853, 1863 |
| AsuC2I | CCSGG | 3 cut(s) | 1103, 1516, 1979 |
| AsuHPI | GGTGA | 3 cut(s) | 1352, 1389, 1791 |
| AsuII | TTCGAA | 1 cut(s) | 1778 |
| AvaII | GGWCC | 3 cut(s) | 103, 1853, 1863 |
| AxyI | CCTNAGG | 1 cut(s) | 1136 |
| BaeGI | GKGCMC | 1 cut(s) | 229 |
| BamHI | GGATCC | 1 cut(s) | 662 |
| BanII | GRGCYC | 2 cut(s) | 114, 1442 |
| Bbv12I | GWGCWC | 3 cut(s) | 114, 229, 1442 |
| BbvCI | CCTCAGC | 2 cut(s) | 328, 447 |
| BccI | CCATC | 5 cut(s) | 300, 550, 1106, 1262, 1864 |
| BceAI | ACGGC | 1 cut(s) | 1740 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1130, 1164 |
| BciT130I | CCWGG | 3 cut(s) | 758, 1281, 1752 |
| BcnI | CCSGG | 3 cut(s) | 1103, 1516, 1979 |
| BcoDI | GTCTC | 4 cut(s) | 36, 170, 834, 1083 |
| BfaI | CTAG | 6 cut(s) | 432, 789, 1350, 1767, 1803, 1811 |
| BfmI | CTRYAG | 1 cut(s) | 804 |
| BmcAI | AGTACT | 1 cut(s) | 1450 |
| Bme1390I | CCNGG | 6 cut(s) | 758, 1103, 1281, 1516, 1752, 1979 |
| Bme18I | GGWCC | 3 cut(s) | 103, 1853, 1863 |
| BmgT120I | GGNCC | 4 cut(s) | 103, 1512, 1853, 1863 |
| BmiI | GGNNCC | 3 cut(s) | 664, 1514, 1587 |
| BmrFI | CCNGG | 6 cut(s) | 758, 1103, 1281, 1516, 1752, 1979 |
| BmsI | GCATC | 5 cut(s) | 129, 1166, 1248, 1834, 1964 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 358, 390 |
| BpmI | CTGGAG | 1 cut(s) | 885 |
| Bpu10I | CCTNAGC | 2 cut(s) | 328, 447 |
| Bpu14I | TTCGAA | 1 cut(s) | 1778 |
| BpuEI | CTTGAG | 2 cut(s) | 194, 383 |
| BpuMI | CCSGG | 3 cut(s) | 1103, 1516, 1979 |
| BsaAI | YACGTR | 1 cut(s) | 158 |
| BsaI | GGTCTC | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 5 cut(s) | 205, 757, 1161, 1514, 1750 |
| BsaWI | WCCGGW | 3 cut(s) | 24, 38, 1399 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 922, 1369, 1898 |
| Bse1I | ACTGG | 2 cut(s) | 1343, 1855 |
| Bse21I | CCTNAGG | 1 cut(s) | 1136 |
| Bse3DI | GCAATG | 5 cut(s) | 637, 770, 1048, 1148, 1239 |
| BseBI | CCWGG | 3 cut(s) | 758, 1281, 1752 |
| BseDI | CCNNGG | 5 cut(s) | 205, 757, 1161, 1514, 1750 |
| BseGI | GGATG | 6 cut(s) | 114, 193, 311, 658, 1111, 1157 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 922, 1369, 1898 |
| BseMI | GCAATG | 5 cut(s) | 637, 770, 1048, 1148, 1239 |
| BseMII | CTCAG | 3 cut(s) | 342, 438, 1150 |
| BseNI | ACTGG | 2 cut(s) | 1343, 1855 |
| BseRI | GAGGAG | 5 cut(s) | 603, 1612, 1675, 1945, 2007 |
| BseSI | GKGCMC | 1 cut(s) | 229 |
| BseYI | CCCAGC | 1 cut(s) | 1193 |
| BsgI | GTGCAG | 1 cut(s) | 1107 |
| Bsh1236I | CGCG | 1 cut(s) | 1762 |
| BshFI | GGCC | 6 cut(s) | 1011, 1147, 1513, 1619, 1755, 1962 |
| BsiHKAI | GWGCWC | 3 cut(s) | 114, 229, 1442 |
| BsiSI | CCGG | 7 cut(s) | 25, 39, 1012, 1102, 1400, 1516, 1979 |
| BslFI | GGGAC | 2 cut(s) | 807, 1733 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 922, 1369, 1898 |
| BsmAI | GTCTC | 4 cut(s) | 36, 170, 834, 1083 |
| BsmBI | CGTCTC | 1 cut(s) | 834 |
| BsmFI | GGGAC | 2 cut(s) | 807, 1733 |
| BsmI | GAATGC | 1 cut(s) | 448 |
| BsnI | GGCC | 6 cut(s) | 1011, 1147, 1513, 1619, 1755, 1962 |
| Bso31I | GGTCTC | 1 cut(s) | 36 |
| Bsp119I | TTCGAA | 1 cut(s) | 1778 |
| Bsp1286I | GDGCHC | 3 cut(s) | 114, 229, 1442 |
| Bsp143I | GATC | 4 cut(s) | 662, 1082, 1200, 1518 |
| Bsp19I | CCATGG | 1 cut(s) | 205 |
| BspACI | CCGC | 7 cut(s) | 81, 118, 169, 569, 680, 726, 1683 |
| BspANI | GGCC | 6 cut(s) | 1011, 1147, 1513, 1619, 1755, 1962 |
| BspCNI | CTCAG | 3 cut(s) | 341, 439, 1149 |
| BspFNI | CGCG | 1 cut(s) | 1762 |
| BspLI | GGNNCC | 3 cut(s) | 664, 1514, 1587 |
| BspMAI | CTGCAG | 1 cut(s) | 808 |
| BspPI | GGATC | 4 cut(s) | 657, 670, 1208, 1526 |
| BspQI | GCTCTTC | 2 cut(s) | 189, 822 |
| BspT104I | TTCGAA | 1 cut(s) | 1778 |
| BspTNI | GGTCTC | 1 cut(s) | 36 |
| BsrDI | GCAATG | 5 cut(s) | 637, 770, 1048, 1148, 1239 |
| BsrI | ACTGG | 2 cut(s) | 1343, 1855 |
| BssECI | CCNNGG | 5 cut(s) | 205, 757, 1161, 1514, 1750 |
| BssMI | GATC | 4 cut(s) | 662, 1082, 1200, 1518 |
| BssNAI | GTATAC | 1 cut(s) | 1323 |
| BssT1I | CCWWGG | 1 cut(s) | 205 |
| Bst1107I | GTATAC | 1 cut(s) | 1323 |
| Bst2UI | CCWGG | 3 cut(s) | 758, 1281, 1752 |
| Bst4CI | ACNGT | 5 cut(s) | 93, 181, 420, 1226, 1747 |
| Bst6I | CTCTTC | 4 cut(s) | 189, 381, 822, 1801 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 233 |
| BstBAI | YACGTR | 1 cut(s) | 158 |
| BstBI | TTCGAA | 1 cut(s) | 1778 |
| BstC8I | GCNNGC | 2 cut(s) | 1728, 1988 |
| BstDEI | CTNAG | 3 cut(s) | 328, 447, 1136 |
| BstDSI | CCRYGG | 1 cut(s) | 205 |
| BstEII | GGTNACC | 1 cut(s) | 1358 |
| BstF5I | GGATG | 6 cut(s) | 114, 193, 311, 658, 1111, 1157 |
| BstFNI | CGCG | 1 cut(s) | 1762 |
| BstHHI | GCGC | 1 cut(s) | 1764 |
| BstKTI | GATC | 4 cut(s) | 665, 1085, 1203, 1521 |
| BstMAI | GTCTC | 4 cut(s) | 36, 170, 834, 1083 |
| BstMBI | GATC | 4 cut(s) | 662, 1082, 1200, 1518 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 126, 233, 329, 575, 812, 1235, 1272, 1761 |
| BstNI | CCWGG | 3 cut(s) | 758, 1281, 1752 |
| BstNSI | RCATGY | 3 cut(s) | 233, 680, 779 |
| BstPI | GGTNACC | 1 cut(s) | 1358 |
| BstSCI | CCNGG | 6 cut(s) | 756, 1101, 1279, 1514, 1750, 1977 |
| BstSFI | CTRYAG | 1 cut(s) | 804 |
| BstSLI | GKGCMC | 1 cut(s) | 229 |
| BstSNI | TACGTA | 1 cut(s) | 158 |
| BstUI | CGCG | 1 cut(s) | 1762 |
| BstX2I | RGATCY | 2 cut(s) | 662, 1200 |
| BstYI | RGATCY | 2 cut(s) | 662, 1200 |
| BstZ17I | GTATAC | 1 cut(s) | 1323 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1136 |
| BsuRI | GGCC | 6 cut(s) | 1011, 1147, 1513, 1619, 1755, 1962 |
| BtgI | CCRYGG | 1 cut(s) | 205 |
| BtgZI | GCGATG | 1 cut(s) | 1281 |
| BtsCI | GGATG | 6 cut(s) | 114, 193, 311, 658, 1111, 1157 |
| BtsI | GCAGTG | 2 cut(s) | 813, 1662 |
| BtsIMutI | CAGTG | 7 cut(s) | 813, 1231, 1305, 1662, 1839, 1848, 2037 |
| Cac8I | GCNNGC | 2 cut(s) | 1728, 1988 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1469 |
| CfoI | GCGC | 1 cut(s) | 1764 |
| Cfr13I | GGNCC | 4 cut(s) | 103, 1512, 1853, 1863 |
| CseI | GACGC | 2 cut(s) | 816, 1996 |
| Csp6I | GTAC | 3 cut(s) | 715, 1340, 1449 |
| CviAII | CATG | 9 cut(s) | 206, 230, 251, 575, 677, 776, 1117, 1478, 1715 |
| CviQI | GTAC | 3 cut(s) | 715, 1340, 1449 |
| DdeI | CTNAG | 3 cut(s) | 328, 447, 1136 |
| DpnI | GATC | 4 cut(s) | 664, 1084, 1202, 1520 |
| DpnII | GATC | 4 cut(s) | 662, 1082, 1200, 1518 |
| DraI | TTTAAA | 1 cut(s) | 1294 |
| Eam1104I | CTCTTC | 4 cut(s) | 189, 381, 822, 1801 |
| EarI | CTCTTC | 4 cut(s) | 189, 381, 822, 1801 |
| Ecl136II | GAGCTC | 2 cut(s) | 112, 1440 |
| Eco105I | TACGTA | 1 cut(s) | 158 |
| Eco130I | CCWWGG | 1 cut(s) | 205 |
| Eco147I | AGGCCT | 2 cut(s) | 1619, 1962 |
| Eco24I | GRGCYC | 2 cut(s) | 114, 1442 |
| Eco31I | GGTCTC | 1 cut(s) | 36 |
| Eco32I | GATATC | 1 cut(s) | 736 |
| Eco47I | GGWCC | 3 cut(s) | 103, 1853, 1863 |
| Eco53kI | GAGCTC | 2 cut(s) | 112, 1440 |
| Eco57I | CTGAAG | 3 cut(s) | 965, 1446, 1560 |
| Eco81I | CCTNAGG | 1 cut(s) | 1136 |
| Eco91I | GGTNACC | 1 cut(s) | 1358 |
| EcoICRI | GAGCTC | 2 cut(s) | 112, 1440 |
| EcoO65I | GGTNACC | 1 cut(s) | 1358 |
| EcoRI | GAATTC | 1 cut(s) | 162 |
| EcoRII | CCWGG | 3 cut(s) | 756, 1279, 1750 |
| EcoRV | GATATC | 1 cut(s) | 736 |
| EcoT14I | CCWWGG | 1 cut(s) | 205 |
| EcoT38I | GRGCYC | 2 cut(s) | 114, 1442 |
| ErhI | CCWWGG | 1 cut(s) | 205 |
| Esp3I | CGTCTC | 1 cut(s) | 834 |
| FaeI | CATG | 9 cut(s) | 209, 233, 254, 578, 680, 779, 1120, 1481, 1718 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 345, 377, 1899, 1931 |
| FaqI | GGGAC | 2 cut(s) | 807, 1733 |
| FatI | CATG | 9 cut(s) | 205, 229, 250, 574, 676, 775, 1116, 1477, 1714 |
| FauNDI | CATATG | 1 cut(s) | 730 |
| FblI | GTMKAC | 1 cut(s) | 1322 |
| FokI | GGATG | 6 cut(s) | 101, 200, 318, 665, 1118, 1144 |
| FriOI | GRGCYC | 2 cut(s) | 114, 1442 |
| FspBI | CTAG | 6 cut(s) | 432, 789, 1350, 1767, 1803, 1811 |
| GlaI | GCGC | 1 cut(s) | 1763 |
| GsaI | CCCAGC | 1 cut(s) | 1197 |
| GsuI | CTGGAG | 1 cut(s) | 885 |
| HaeIII | GGCC | 6 cut(s) | 1011, 1147, 1513, 1619, 1755, 1962 |
| HapII | CCGG | 7 cut(s) | 25, 39, 1012, 1102, 1400, 1516, 1979 |
| HgaI | GACGC | 2 cut(s) | 816, 1996 |
| HhaI | GCGC | 1 cut(s) | 1764 |
| Hin1II | CATG | 9 cut(s) | 209, 233, 254, 578, 680, 779, 1120, 1481, 1718 |
| Hin6I | GCGC | 1 cut(s) | 1762 |
| HinP1I | GCGC | 1 cut(s) | 1762 |
| HincII | GTYRAC | 1 cut(s) | 562 |
| HindII | GTYRAC | 1 cut(s) | 562 |
| HindIII | AAGCTT | 1 cut(s) | 242 |
| HinfI | GANTC | 6 cut(s) | 260, 532, 934, 966, 1542, 1608 |
| HpaI | GTTAAC | 1 cut(s) | 562 |
| HpaII | CCGG | 7 cut(s) | 25, 39, 1012, 1102, 1400, 1516, 1979 |
| HphI | GGTGA | 3 cut(s) | 1352, 1389, 1791 |
| Hpy166II | GTNNAC | 6 cut(s) | 227, 562, 1048, 1323, 1474, 1904 |
| Hpy188III | TCNNGA | 6 cut(s) | 864, 943, 1080, 1214, 1546, 1811 |
| Hpy8I | GTNNAC | 6 cut(s) | 227, 562, 1048, 1323, 1474, 1904 |
| HpyAV | CCTTC | 8 cut(s) | 386, 604, 843, 922, 1001, 1031, 1470, 1917 |
| HpyCH4III | ACNGT | 5 cut(s) | 93, 181, 420, 1226, 1747 |
| HpyCH4IV | ACGT | 1 cut(s) | 157 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 126, 233, 329, 575, 812, 1235, 1272, 1761 |
| HpyF3I | CTNAG | 3 cut(s) | 328, 447, 1136 |
| HpySE526I | ACGT | 1 cut(s) | 157 |
| Hsp92II | CATG | 9 cut(s) | 209, 233, 254, 578, 680, 779, 1120, 1481, 1718 |
| HspAI | GCGC | 1 cut(s) | 1762 |
| KspAI | GTTAAC | 1 cut(s) | 562 |
| Kzo9I | GATC | 4 cut(s) | 662, 1082, 1200, 1518 |
| LguI | GCTCTTC | 2 cut(s) | 189, 822 |
| LmnI | GCTCC | 3 cut(s) | 435, 613, 1591 |
| LweI | GCATC | 5 cut(s) | 129, 1166, 1248, 1834, 1964 |
| MaeI | CTAG | 6 cut(s) | 432, 789, 1350, 1767, 1803, 1811 |
| MaeII | ACGT | 1 cut(s) | 157 |
| MaeIII | GTNAC | 3 cut(s) | 406, 1358, 1664 |
| MalI | GATC | 4 cut(s) | 664, 1084, 1202, 1520 |
| MboI | GATC | 4 cut(s) | 662, 1082, 1200, 1518 |
| MboII | GAAGA | 9 cut(s) | 206, 368, 809, 958, 992, 1386, 1540, 1702, 1788 |
| MfeI | CAATTG | 1 cut(s) | 1086 |
| MflI | RGATCY | 2 cut(s) | 662, 1200 |
| MhlI | GDGCHC | 3 cut(s) | 114, 229, 1442 |
| MluCI | AATT | 8 cut(s) | 162, 797, 1086, 1173, 1387, 1443, 1694, 1894 |
| MlyI | GAGTC | 2 cut(s) | 269, 975 |
| MmeI | TCCRAC | 3 cut(s) | 492, 1326, 1703 |
| MroXI | GAANNNNTTC | 3 cut(s) | 816, 873, 1387 |
| MseI | TTAA | 6 cut(s) | 561, 1253, 1293, 1709, 1917, 2038 |
| MslI | CAYNNNNRTG | 1 cut(s) | 255 |
| MspA1I | CMGCKG | 3 cut(s) | 323, 332, 686 |
| MspI | CCGG | 7 cut(s) | 25, 39, 1012, 1102, 1400, 1516, 1979 |
| MspR9I | CCNGG | 6 cut(s) | 758, 1103, 1281, 1516, 1752, 1979 |
| MunI | CAATTG | 1 cut(s) | 1086 |
| Mva1269I | GAATGC | 1 cut(s) | 448 |
| MvaI | CCWGG | 3 cut(s) | 758, 1281, 1752 |
| MvnI | CGCG | 1 cut(s) | 1762 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 126, 233, 329, 575, 812, 1235, 1272, 1761 |
| NciI | CCSGG | 3 cut(s) | 1103, 1516, 1979 |
| NcoI | CCATGG | 1 cut(s) | 205 |
| NdeI | CATATG | 1 cut(s) | 730 |
| NdeII | GATC | 4 cut(s) | 662, 1082, 1200, 1518 |
| NlaIII | CATG | 9 cut(s) | 209, 233, 254, 578, 680, 779, 1120, 1481, 1718 |
| NlaIV | GGNNCC | 3 cut(s) | 664, 1514, 1587 |
| NmuCI | GTSAC | 1 cut(s) | 1358 |
| NspI | RCATGY | 3 cut(s) | 233, 680, 779 |
| NspV | TTCGAA | 1 cut(s) | 1778 |
| PceI | AGGCCT | 2 cut(s) | 1619, 1962 |
| PciI | ACATGT | 1 cut(s) | 229 |
| PciSI | GCTCTTC | 2 cut(s) | 189, 822 |
| PctI | GAATGC | 1 cut(s) | 448 |
| PdmI | GAANNNNTTC | 3 cut(s) | 816, 873, 1387 |
| PfeI | GAWTC | 4 cut(s) | 532, 934, 1542, 1608 |
| PflFI | GACNNNGTC | 1 cut(s) | 101 |
| PfoI | TCCNGGA | 2 cut(s) | 1101, 1279 |
| PleI | GAGTC | 2 cut(s) | 268, 974 |
| PpsI | GAGTC | 2 cut(s) | 268, 974 |
| Ppu21I | YACGTR | 1 cut(s) | 158 |
| PscI | ACATGT | 1 cut(s) | 229 |
| PsiI | TTATAA | 1 cut(s) | 546 |
| Psp124BI | GAGCTC | 2 cut(s) | 114, 1442 |
| Psp6I | CCWGG | 3 cut(s) | 756, 1279, 1750 |
| PspEI | GGTNACC | 1 cut(s) | 1358 |
| PspFI | CCCAGC | 1 cut(s) | 1193 |
| PspGI | CCWGG | 3 cut(s) | 756, 1279, 1750 |
| PspN4I | GGNNCC | 3 cut(s) | 664, 1514, 1587 |
| PspPI | GGNCC | 4 cut(s) | 103, 1512, 1853, 1863 |
| PstI | CTGCAG | 1 cut(s) | 808 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1469 |
| PsuI | RGATCY | 2 cut(s) | 662, 1200 |
| PsyI | GACNNNGTC | 1 cut(s) | 101 |
| PvuII | CAGCTG | 3 cut(s) | 323, 332, 686 |
| RsaI | GTAC | 3 cut(s) | 716, 1341, 1450 |
| RsaNI | GTAC | 3 cut(s) | 715, 1340, 1449 |
| RseI | CAYNNNNRTG | 1 cut(s) | 255 |
| SacI | GAGCTC | 2 cut(s) | 114, 1442 |
| SapI | GCTCTTC | 2 cut(s) | 189, 822 |
| SaqAI | TTAA | 6 cut(s) | 561, 1253, 1293, 1709, 1917, 2038 |
| Sau3AI | GATC | 4 cut(s) | 662, 1082, 1200, 1518 |
| Sau96I | GGNCC | 4 cut(s) | 103, 1512, 1853, 1863 |
| ScaI | AGTACT | 1 cut(s) | 1450 |
| SchI | GAGTC | 2 cut(s) | 269, 975 |
| ScrFI | CCNGG | 6 cut(s) | 758, 1103, 1281, 1516, 1752, 1979 |
| SduI | GDGCHC | 3 cut(s) | 114, 229, 1442 |
| SfaNI | GCATC | 5 cut(s) | 129, 1166, 1248, 1834, 1964 |
| SfcI | CTRYAG | 1 cut(s) | 804 |
| SfuI | TTCGAA | 1 cut(s) | 1778 |
| SinI | GGWCC | 3 cut(s) | 103, 1853, 1863 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 255 |
| SmlI | CTYRAG | 2 cut(s) | 173, 362 |
| SmoI | CTYRAG | 2 cut(s) | 173, 362 |
| SnaBI | TACGTA | 1 cut(s) | 158 |
| Sse9I | AATT | 8 cut(s) | 162, 797, 1086, 1173, 1387, 1443, 1694, 1894 |
| SseBI | AGGCCT | 2 cut(s) | 1619, 1962 |
| SsiI | CCGC | 7 cut(s) | 81, 118, 169, 569, 680, 726, 1683 |
| SspMI | CTAG | 6 cut(s) | 432, 789, 1350, 1767, 1803, 1811 |
| SstI | GAGCTC | 2 cut(s) | 114, 1442 |
| StuI | AGGCCT | 2 cut(s) | 1619, 1962 |
| StyD4I | CCNGG | 6 cut(s) | 756, 1101, 1279, 1514, 1750, 1977 |
| StyI | CCWWGG | 1 cut(s) | 205 |
| TaaI | ACNGT | 5 cut(s) | 93, 181, 420, 1226, 1747 |
| TaiI | ACGT | 1 cut(s) | 160 |
| TaqI | TCGA | 6 cut(s) | 123, 238, 289, 487, 1081, 1778 |
| TasI | AATT | 8 cut(s) | 162, 797, 1086, 1173, 1387, 1443, 1694, 1894 |
| TatI | WGTACW | 1 cut(s) | 1448 |
| TauI | GCSGC | 4 cut(s) | 83, 171, 683, 728 |
| TfiI | GAWTC | 4 cut(s) | 532, 934, 1542, 1608 |
| Tru1I | TTAA | 6 cut(s) | 561, 1253, 1293, 1709, 1917, 2038 |
| Tru9I | TTAA | 6 cut(s) | 561, 1253, 1293, 1709, 1917, 2038 |
| TscAI | CASTG | 7 cut(s) | 813, 1231, 1312, 1662, 1846, 1855, 2037 |
| TseFI | GTSAC | 1 cut(s) | 1358 |
| Tsp45I | GTSAC | 1 cut(s) | 1358 |
| TspDTI | ATGAA | 7 cut(s) | 207, 267, 563, 825, 926, 1020, 1380 |
| TspGWI | ACGGA | 1 cut(s) | 905 |
| TspRI | CASTG | 7 cut(s) | 813, 1231, 1312, 1662, 1846, 1855, 2037 |
| Tth111I | GACNNNGTC | 1 cut(s) | 101 |
| VneI | GTGCAC | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 3 cut(s) | 103, 1853, 1863 |
| XapI | RAATTY | 3 cut(s) | 162, 1694, 1894 |
| XbaI | TCTAGA | 1 cut(s) | 1810 |
| XceI | RCATGY | 3 cut(s) | 233, 680, 779 |
| XmiI | GTMKAC | 1 cut(s) | 1322 |
| XmnI | GAANNNNTTC | 3 cut(s) | 816, 873, 1387 |
| XspI | CTAG | 6 cut(s) | 432, 789, 1350, 1767, 1803, 1811 |
| ZrmI | AGTACT | 1 cut(s) | 1450 |