Rorug02G0576700

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002201
Physical Location & Seq
Reverse (-)
70111339 .. 70112169
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0576700.1

Sequence Viewer

Length: 831 bp
ATGCTTCTTGATAAGTATAATCTTAGGGGGAACAATTGGCTTATAACAATGTATATTGATCGCAAATTGTGGGTCCCAGTATACGTAAGAGATACATTCTTTGCAGGCATGTATGCTGCCCAGCGGAGTGGAAGTGTGAACTCACTTTTTGATGGCTATGTGAATGCAGGAACTACGTTACAAGATTTTGCAAAGCAATATGAGAAGGCTTTAGATGAAAGATATGAGAAAGAAGCAAAGGCAGAGTTTGAGACTTTTTATACTAAACCAGTTTTAAAGACACCACTTCCTGTGGAAAAGCAAGGAGCAGATGTGTACACAAGAAGAATGTTCACCGTATTTCAGGAAGAAGTCTTTGAATCTCTTGTGTTTGCTGTGAAATTAAGGGGAGAGGATGGAGGAACCAGCACTTATGAGGTAGCAAGATTTAACGAAGAACAAAAAGTGTATTCTGTGGCTTTTTGTGGAGCTGAACTACTAGCTAGTTGTAGTTGCAAGATGTTTGAATTTGAAGGGATCCTCTGTAGACATGTGCTAGCTGTATTTAAAGCTACAAATGTCTTTAATCTCCCCCTTGGTTATATATTAAAGCGATGGACAAGAAATGCTAAGGAAGAGGCTATATTAGATTTGGAAACTGAATTGCAGGGCAGTTCTAAAAAAAGCAGGAATTCGCAGTACAATATTCTGTATCAGGAAGCCGTTAAATGTGTGGAGGAAGGGATGGCATCTGACCAGATATTTAAGGTAGCATTAAACGCATTAAGAGATGCTAGGATCAAAATTGTTGGTGCAAAAAGAAATGACATCAAAGCAATGCCCCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5

Protein Analysis

276

Amino Acids

31.64

Weight (kDa)

8.13

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 159 - 185 5.5e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AccI GTMKAC 2 cut(s) 81, 526
AciI CCGC 1 cut(s) 124
AclWI GGATC 3 cut(s) 511, 524, 785
AcsI RAATTY 2 cut(s) 506, 670
AfaI GTAC 2 cut(s) 317, 680
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 3 cut(s) 359, 506, 512
AluBI AGCT 4 cut(s) 470, 482, 539, 551
AluI AGCT 4 cut(s) 470, 482, 539, 551
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 3 cut(s) 511, 524, 785
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 506, 670
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 325
AsuNHI GCTAGC 1 cut(s) 535
AvaII GGWCC 1 cut(s) 73
BamHI GGATCC 1 cut(s) 516
BbvI GCAGC 1 cut(s) 103
BccI CCATC 4 cut(s) 146, 389, 588, 718
BceAI ACGGC 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 5 cut(s) 479, 483, 536, 774, 829
BfmI CTRYAG 1 cut(s) 523
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 4 cut(s) 74, 75, 403, 518
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 737, 760
BmtI GCTAGC 1 cut(s) 539
BmuI ACTGGG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 574
BsaXI ACNNNNNCTCC 4 cut(s) 118, 148, 297, 327
Bse1I ACTGG 2 cut(s) 77, 269
Bse3DI GCAATG 1 cut(s) 822
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 2 cut(s) 400, 729
BseMI GCAATG 1 cut(s) 822
BseNI ACTGG 2 cut(s) 77, 269
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 120
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 3 cut(s) 58, 516, 777
BspACI CCGC 1 cut(s) 124
BspLI GGNNCC 4 cut(s) 74, 75, 403, 518
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 3 cut(s) 511, 524, 785
BsrDI GCAATG 1 cut(s) 822
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 2 cut(s) 77, 269
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 3 cut(s) 58, 516, 777
BssNAI GTATAC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 574
Bst1107I GTATAC 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 609
BstAUI TGTACA 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 106, 537
BstDEI CTNAG 2 cut(s) 23, 609
BstF5I GGATG 2 cut(s) 400, 729
BstKTI GATC 3 cut(s) 61, 519, 780
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 3 cut(s) 58, 516, 777
BstMWI GCNNNNNNNGC 1 cut(s) 758
BstNSI RCATGY 2 cut(s) 112, 533
BstSFI CTRYAG 1 cut(s) 523
BstSNI TACGTA 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 516
BstXI CCANNNNNNTGG 1 cut(s) 128
BstYI RGATCY 1 cut(s) 516
BstZ17I GTATAC 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 607
BtsCI GGATG 2 cut(s) 400, 729
Cac8I GCNNGC 2 cut(s) 106, 537
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 316, 679
CviAII CATG 2 cut(s) 109, 530
CviQI GTAC 2 cut(s) 316, 679
DdeI CTNAG 2 cut(s) 23, 609
DpnI GATC 3 cut(s) 60, 518, 779
DpnII GATC 3 cut(s) 58, 516, 777
DraI TTTAAA 2 cut(s) 276, 547
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco105I TACGTA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 2 cut(s) 112, 533
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 108, 529
FblI GTMKAC 2 cut(s) 81, 526
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 407, 736
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 5 cut(s) 479, 483, 536, 774, 829
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 124
Hin1II CATG 2 cut(s) 112, 533
HinfI GANTC 1 cut(s) 359
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 6 cut(s) 82, 139, 316, 318, 333, 527
Hpy188I TCNGA 1 cut(s) 733
Hpy188III TCNNGA 3 cut(s) 8, 344, 695
Hpy8I GTNNAC 6 cut(s) 82, 139, 316, 318, 333, 527
HpyAV CCTTC 3 cut(s) 199, 506, 713
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 2 cut(s) 84, 176
HpyCH4V TGCA 6 cut(s) 104, 167, 191, 495, 646, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 758
HpyF3I CTNAG 2 cut(s) 23, 609
HpySE526I ACGT 2 cut(s) 84, 176
Hsp92II CATG 2 cut(s) 112, 533
KflI GGGWCCC 1 cut(s) 73
Kzo9I GATC 3 cut(s) 58, 516, 777
LmnI GCTCC 2 cut(s) 305, 467
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 737, 760
MaeI CTAG 5 cut(s) 479, 483, 536, 774, 829
MaeII ACGT 2 cut(s) 84, 176
MaeIII GTNAC 1 cut(s) 177
MalI GATC 3 cut(s) 60, 518, 779
MboI GATC 3 cut(s) 58, 516, 777
MboII GAAGA 4 cut(s) 336, 359, 446, 626
MfeI CAATTG 1 cut(s) 34
MflI RGATCY 1 cut(s) 516
MluCI AATT 7 cut(s) 34, 65, 380, 506, 641, 670, 783
MnlI CCTC 6 cut(s) 385, 392, 409, 530, 610, 709
MspA1I CMGCKG 1 cut(s) 124
MunI CAATTG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 758
NdeII GATC 3 cut(s) 58, 516, 777
NheI GCTAGC 1 cut(s) 535
NlaIII CATG 2 cut(s) 112, 533
NlaIV GGNNCC 4 cut(s) 74, 75, 403, 518
NspI RCATGY 2 cut(s) 112, 533
PciI ACATGT 1 cut(s) 529
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 73
PscI ACATGT 1 cut(s) 529
PsiI TTATAA 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 120
PspN4I GGNNCC 4 cut(s) 74, 75, 403, 518
PspPI GGNCC 1 cut(s) 73
PspPPI RGGWCCY 1 cut(s) 73
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 2 cut(s) 317, 680
RsaNI GTAC 2 cut(s) 316, 679
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 58, 516, 777
Sau96I GGNCC 1 cut(s) 73
SetI ASST 8 cut(s) 87, 179, 420, 472, 484, 541, 553, 750
SfaNI GCATC 2 cut(s) 737, 760
SfcI CTRYAG 1 cut(s) 523
SinI GGWCC 1 cut(s) 73
SnaBI TACGTA 1 cut(s) 85
Sse9I AATT 7 cut(s) 34, 65, 380, 506, 641, 670, 783
SsiI CCGC 1 cut(s) 124
SspI AATATT 1 cut(s) 685
SspMI CTAG 5 cut(s) 479, 483, 536, 774, 829
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 2 cut(s) 87, 179
TasI AATT 7 cut(s) 34, 65, 380, 506, 641, 670, 783
TatI WGTACW 2 cut(s) 315, 678
TfiI GAWTC 1 cut(s) 359
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 2 cut(s) 506, 670
XceI RCATGY 2 cut(s) 112, 533
XmiI GTMKAC 2 cut(s) 81, 526
XspI CTAG 5 cut(s) 479, 483, 536, 774, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.