PB1 domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G35050 AT2G35050 |
| fragaria_vesca | FvH4_3g12590 FvH4_3g12590 FvH4_3g12590 |
| malus_domestica | MD05G1249500.v1.1 MD10G1168200.v1.1 MD10G1229900.v1.1 |
| prunus_persica | Prupe.4G114600_v2.0.a1 Prupe.4G114600_v2.0.a1 |
| pyrus_communis | pycom05g22660 pycom05g22670 pycom10g19340 pycom10g19350 |
| rosa_chinensis | RchiOBHm_Chr2g0086691 RchiOBHm_Chr5g0020551 |
| rosa_laevigata | RLG00000032538 |
| rosa_multiflora | Rmu_sc0004626.1_g000009 Rmu_sc0009745.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00057740 Rroxscaffold_4G00315010 |
| rosa_rugosa | Rorug01G0468600 Rorug05G0060400 Rorug05G0060500 Rorug05G0060600 Rorug05G0060600 |
| rosa_samantha | Rh2AG020600 Rh2BG020400 Rh5AG151100 Rh5BG150500 Rh5CG162000 Rh5DG149900 |
| rosa_wichuraiana | Rw5G013370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2538 |
| Acc65I | GGTACC | 1 cut(s) | 4057 |
| AccB1I | GGYRCC | 1 cut(s) | 4057 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1291, 1691, 2350, 2726 |
| AccBSI | CCGCTC | 1 cut(s) | 2008 |
| AccI | GTMKAC | 1 cut(s) | 2591 |
| AccII | CGCG | 1 cut(s) | 2410 |
| AciI | CCGC | 9 cut(s) | 304, 1745, 1973, 2008, 2117, 2410, 2499, 3529, 4003 |
| AcoI | YGGCCR | 2 cut(s) | 466, 2341 |
| AcuI | CTGAAG | 7 cut(s) | 330, 570, 638, 1182, 1845, 2448, 3012 |
| AcyI | GRCGYC | 1 cut(s) | 3997 |
| AdeI | CACNNNGTG | 1 cut(s) | 1291 |
| AfaI | GTAC | 8 cut(s) | 88, 130, 528, 1185, 2298, 3184, 3591, 4059 |
| AflII | CTTAAG | 1 cut(s) | 3221 |
| AflIII | ACRYGT | 2 cut(s) | 695, 2317 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1696, 1728 |
| Alw21I | GWGCWC | 3 cut(s) | 1097, 1130, 1616 |
| Alw26I | GTCTC | 5 cut(s) | 586, 1255, 1745, 2308, 3502 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1109 |
| Ama87I | CYCGRG | 3 cut(s) | 968, 1098, 3162 |
| AoxI | GGCC | 5 cut(s) | 248, 466, 2341, 2353, 3893 |
| ApeKI | GCWGC | 8 cut(s) | 325, 1142, 1456, 2405, 3070, 3551, 3953, 4016 |
| AseI | ATTAAT | 1 cut(s) | 2640 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1021, 2148 |
| Asp718I | GGTACC | 1 cut(s) | 4057 |
| AspA2I | CCTAGG | 2 cut(s) | 896, 1006 |
| AspLEI | GCGC | 3 cut(s) | 2410, 2539, 3324 |
| AspS9I | GGNCC | 7 cut(s) | 1003, 1883, 2353, 2509, 2701, 2845, 3431 |
| AsuC2I | CCSGG | 3 cut(s) | 182, 707, 795 |
| AsuII | TTCGAA | 1 cut(s) | 3380 |
| AvaI | CYCGRG | 3 cut(s) | 968, 1098, 3162 |
| AvaII | GGWCC | 6 cut(s) | 1003, 1883, 2509, 2701, 2845, 3431 |
| AvrII | CCTAGG | 2 cut(s) | 896, 1006 |
| AxyI | CCTNAGG | 1 cut(s) | 2277 |
| BaeGI | GKGCMC | 1 cut(s) | 1332 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 4049 |
| BalI | TGGCCA | 2 cut(s) | 468, 2343 |
| BamHI | GGATCC | 3 cut(s) | 184, 352, 2010 |
| BanI | GGYRCC | 1 cut(s) | 4057 |
| BanII | GRGCYC | 1 cut(s) | 1616 |
| BauI | CACGAG | 2 cut(s) | 771, 2655 |
| Bbv12I | GWGCWC | 3 cut(s) | 1097, 1130, 1616 |
| BbvCI | CCTCAGC | 1 cut(s) | 2526 |
| BbvI | GCAGC | 8 cut(s) | 337, 1154, 1468, 2392, 3082, 3563, 3940, 4028 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 269, 303, 3633, 3667 |
| BclI | TGATCA | 1 cut(s) | 2098 |
| BcnI | CCSGG | 3 cut(s) | 182, 707, 795 |
| BcoDI | GTCTC | 5 cut(s) | 586, 1255, 1745, 2308, 3502 |
| BfaI | CTAG | 8 cut(s) | 141, 660, 897, 915, 1007, 1716, 2688, 3446 |
| BfmI | CTRYAG | 2 cut(s) | 628, 4014 |
| BfoI | RGCGCY | 1 cut(s) | 3325 |
| BfrI | CTTAAG | 1 cut(s) | 3221 |
| BglII | AGATCT | 2 cut(s) | 838, 3208 |
| BlnI | CCTAGG | 2 cut(s) | 896, 1006 |
| BlpI | GCTNAGC | 1 cut(s) | 1528 |
| BmcAI | AGTACT | 2 cut(s) | 130, 1185 |
| Bme18I | GGWCC | 6 cut(s) | 1003, 1883, 2509, 2701, 2845, 3431 |
| BmeT110I | CYCGRG | 3 cut(s) | 968, 1098, 3162 |
| BmgT120I | GGNCC | 7 cut(s) | 1003, 1883, 2353, 2509, 2701, 2845, 3431 |
| BmrI | ACTGGG | 1 cut(s) | 404 |
| BmsI | GCATC | 7 cut(s) | 497, 799, 1233, 1276, 2257, 2548, 3538 |
| BmuI | ACTGGG | 1 cut(s) | 404 |
| BoxI | GACNNNNGTC | 1 cut(s) | 157 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2613, 2645 |
| BpmI | CTGGAG | 4 cut(s) | 204, 1410, 1778, 3723 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2526, 2772 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1528 |
| Bpu14I | TTCGAA | 1 cut(s) | 3380 |
| BpuEI | CTTGAG | 3 cut(s) | 2306, 2332, 2764 |
| BpuMI | CCSGG | 3 cut(s) | 182, 707, 795 |
| BsaAI | YACGTR | 1 cut(s) | 698 |
| BsaBI | GATNNNNATC | 3 cut(s) | 837, 963, 2271 |
| BsaHI | GRCGYC | 1 cut(s) | 3997 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2880, 2910, 2936, 2966, 3861, 3891 |
| Bse118I | RCCGGY | 2 cut(s) | 275, 2355 |
| Bse1I | ACTGG | 6 cut(s) | 399, 2214, 2743, 3003, 3709, 3829 |
| Bse21I | CCTNAGG | 1 cut(s) | 2277 |
| Bse3DI | GCAATG | 3 cut(s) | 1343, 3950, 3963 |
| Bse8I | GATNNNNATC | 3 cut(s) | 837, 963, 2271 |
| BseJI | GATNNNNATC | 3 cut(s) | 837, 963, 2271 |
| BseMI | GCAATG | 3 cut(s) | 1343, 3950, 3963 |
| BseNI | ACTGG | 6 cut(s) | 399, 2214, 2743, 3003, 3709, 3829 |
| BseRI | GAGGAG | 1 cut(s) | 3845 |
| BseSI | GKGCMC | 1 cut(s) | 1332 |
| BseXI | GCAGC | 8 cut(s) | 337, 1154, 1468, 2392, 3082, 3563, 3940, 4028 |
| BseYI | CCCAGC | 4 cut(s) | 1986, 2563, 2597, 3948 |
| Bsh1236I | CGCG | 1 cut(s) | 2410 |
| BshFI | GGCC | 5 cut(s) | 250, 468, 2343, 2355, 3895 |
| BshNI | GGYRCC | 1 cut(s) | 4057 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1097, 1130, 1616 |
| BsiHKCI | CYCGRG | 3 cut(s) | 968, 1098, 3162 |
| BsiSI | CCGG | 5 cut(s) | 182, 276, 706, 795, 2356 |
| BslFI | GGGAC | 5 cut(s) | 165, 1248, 2714, 2991, 3262 |
| BsmAI | GTCTC | 5 cut(s) | 586, 1255, 1745, 2308, 3502 |
| BsmFI | GGGAC | 5 cut(s) | 165, 1248, 2714, 2991, 3262 |
| BsmI | GAATGC | 2 cut(s) | 866, 3574 |
| BsnI | GGCC | 5 cut(s) | 250, 468, 2343, 2355, 3895 |
| BsoBI | CYCGRG | 3 cut(s) | 968, 1098, 3162 |
| Bsp119I | TTCGAA | 1 cut(s) | 3380 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1097, 1130, 1332, 1616 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1528 |
| BspACI | CCGC | 9 cut(s) | 304, 1745, 1973, 2008, 2117, 2410, 2499, 3529, 4003 |
| BspANI | GGCC | 5 cut(s) | 250, 468, 2343, 2355, 3895 |
| BspFNI | CGCG | 1 cut(s) | 2410 |
| BspHI | TCATGA | 1 cut(s) | 2764 |
| BspMAI | CTGCAG | 1 cut(s) | 4018 |
| BspQI | GCTCTTC | 2 cut(s) | 1446, 3210 |
| BspT104I | TTCGAA | 1 cut(s) | 3380 |
| BspT107I | GGYRCC | 1 cut(s) | 4057 |
| BspTI | CTTAAG | 1 cut(s) | 3221 |
| BsrBI | CCGCTC | 1 cut(s) | 2008 |
| BsrDI | GCAATG | 3 cut(s) | 1343, 3950, 3963 |
| BsrFI | RCCGGY | 2 cut(s) | 275, 2355 |
| BsrI | ACTGG | 6 cut(s) | 399, 2214, 2743, 3003, 3709, 3829 |
| BssAI | RCCGGY | 2 cut(s) | 275, 2355 |
| BssNI | GRCGYC | 1 cut(s) | 3997 |
| BssSI | CACGAG | 2 cut(s) | 771, 2655 |
| BssT1I | CCWWGG | 6 cut(s) | 320, 896, 1006, 2512, 2682, 3051 |
| Bst2BI | CACGAG | 2 cut(s) | 771, 2655 |
| Bst6I | CTCTTC | 6 cut(s) | 589, 1056, 1339, 1446, 1598, 3210 |
| BstACI | GRCGYC | 1 cut(s) | 3997 |
| BstAFI | CTTAAG | 1 cut(s) | 3221 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 494 |
| BstBAI | YACGTR | 1 cut(s) | 698 |
| BstBI | TTCGAA | 1 cut(s) | 3380 |
| BstC8I | GCNNGC | 6 cut(s) | 1126, 2357, 3122, 3970, 4001, 4021 |
| BstEII | GGTNACC | 1 cut(s) | 531 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 547, 3903 |
| BstFNI | CGCG | 1 cut(s) | 2410 |
| BstH2I | RGCGCY | 1 cut(s) | 3325 |
| BstHHI | GCGC | 3 cut(s) | 2410, 2539, 3324 |
| BstMAI | GTCTC | 5 cut(s) | 586, 1255, 1745, 2308, 3502 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 242, 494, 1130, 1139, 1742, 2164, 3548, 3901, 3940 |
| BstNSI | RCATGY | 5 cut(s) | 214, 344, 2198, 2321, 3491 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 157 |
| BstPI | GGTNACC | 1 cut(s) | 531 |
| BstSFI | CTRYAG | 2 cut(s) | 628, 4014 |
| BstSLI | GKGCMC | 1 cut(s) | 1332 |
| BstUI | CGCG | 1 cut(s) | 2410 |
| BstV1I | GCAGC | 8 cut(s) | 337, 1154, 1468, 2392, 3082, 3563, 3940, 4028 |
| BstX2I | RGATCY | 9 cut(s) | 184, 352, 379, 733, 802, 838, 1193, 2010, 3208 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2550 |
| BstYI | RGATCY | 9 cut(s) | 184, 352, 379, 733, 802, 838, 1193, 2010, 3208 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2277 |
| BsuRI | GGCC | 5 cut(s) | 250, 468, 2343, 2355, 3895 |
| BtsI | GCAGTG | 1 cut(s) | 1110 |
| BtsIMutI | CAGTG | 7 cut(s) | 612, 864, 1110, 1255, 1271, 2867, 2946 |
| Cac8I | GCNNGC | 6 cut(s) | 1126, 2357, 3122, 3970, 4001, 4021 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1109 |
| CciI | TCATGA | 1 cut(s) | 2764 |
| CfoI | GCGC | 3 cut(s) | 2410, 2539, 3324 |
| Cfr10I | RCCGGY | 2 cut(s) | 275, 2355 |
| Cfr13I | GGNCC | 7 cut(s) | 1003, 1883, 2353, 2509, 2701, 2845, 3431 |
| CseI | GACGC | 1 cut(s) | 4005 |
| Csp6I | GTAC | 8 cut(s) | 87, 129, 527, 1184, 2297, 3183, 3590, 4058 |
| CviQI | GTAC | 8 cut(s) | 87, 129, 527, 1184, 2297, 3183, 3590, 4058 |
| DraIII | CACNNNGTG | 1 cut(s) | 1291 |
| EaeI | YGGCCR | 2 cut(s) | 466, 2341 |
| Eam1104I | CTCTTC | 6 cut(s) | 589, 1056, 1339, 1446, 1598, 3210 |
| EarI | CTCTTC | 6 cut(s) | 589, 1056, 1339, 1446, 1598, 3210 |
| Ecl136II | GAGCTC | 1 cut(s) | 1614 |
| Eco130I | CCWWGG | 6 cut(s) | 320, 896, 1006, 2512, 2682, 3051 |
| Eco147I | AGGCCT | 1 cut(s) | 250 |
| Eco24I | GRGCYC | 1 cut(s) | 1616 |
| Eco32I | GATATC | 1 cut(s) | 721 |
| Eco47I | GGWCC | 6 cut(s) | 1003, 1883, 2509, 2701, 2845, 3431 |
| Eco53kI | GAGCTC | 1 cut(s) | 1614 |
| Eco57I | CTGAAG | 7 cut(s) | 330, 570, 638, 1182, 1845, 2448, 3012 |
| Eco81I | CCTNAGG | 1 cut(s) | 2277 |
| Eco88I | CYCGRG | 3 cut(s) | 968, 1098, 3162 |
| Eco91I | GGTNACC | 1 cut(s) | 531 |
| EcoICRI | GAGCTC | 1 cut(s) | 1614 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 547, 3903 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2701 |
| EcoO65I | GGTNACC | 1 cut(s) | 531 |
| EcoRI | GAATTC | 1 cut(s) | 2260 |
| EcoRV | GATATC | 1 cut(s) | 721 |
| EcoT14I | CCWWGG | 6 cut(s) | 320, 896, 1006, 2512, 2682, 3051 |
| EcoT22I | ATGCAT | 1 cut(s) | 3852 |
| EcoT38I | GRGCYC | 1 cut(s) | 1616 |
| ErhI | CCWWGG | 6 cut(s) | 320, 896, 1006, 2512, 2682, 3051 |
| FaqI | GGGAC | 5 cut(s) | 165, 1248, 2714, 2991, 3262 |
| FauI | CCCGC | 2 cut(s) | 297, 3996 |
| FauNDI | CATATG | 2 cut(s) | 63, 1687 |
| FbaI | TGATCA | 1 cut(s) | 2098 |
| FblI | GTMKAC | 1 cut(s) | 2591 |
| FriOI | GRGCYC | 1 cut(s) | 1616 |
| FspAI | RTGCGCAY | 1 cut(s) | 2538 |
| FspBI | CTAG | 8 cut(s) | 141, 660, 897, 915, 1007, 1716, 2688, 3446 |
| FspI | TGCGCA | 1 cut(s) | 2538 |
| GlaI | GCGC | 3 cut(s) | 2409, 2538, 3323 |
| GsaI | CCCAGC | 4 cut(s) | 1990, 2567, 2601, 3952 |
| GsuI | CTGGAG | 4 cut(s) | 204, 1410, 1778, 3723 |
| HaeII | RGCGCY | 1 cut(s) | 3325 |
| HaeIII | GGCC | 5 cut(s) | 250, 468, 2343, 2355, 3895 |
| HapII | CCGG | 5 cut(s) | 182, 276, 706, 795, 2356 |
| HgaI | GACGC | 1 cut(s) | 4005 |
| HhaI | GCGC | 3 cut(s) | 2410, 2539, 3324 |
| Hin1I | GRCGYC | 1 cut(s) | 3997 |
| Hin6I | GCGC | 3 cut(s) | 2408, 2537, 3322 |
| HinP1I | GCGC | 3 cut(s) | 2408, 2537, 3322 |
| HincII | GTYRAC | 1 cut(s) | 753 |
| HindII | GTYRAC | 1 cut(s) | 753 |
| HindIII | AAGCTT | 2 cut(s) | 2447, 3383 |
| HpaII | CCGG | 5 cut(s) | 182, 276, 706, 795, 2356 |
| Hpy166II | GTNNAC | 8 cut(s) | 316, 712, 753, 1883, 2592, 2720, 3592, 3625 |
| Hpy8I | GTNNAC | 8 cut(s) | 316, 712, 753, 1883, 2592, 2720, 3592, 3625 |
| Hpy99I | CGWCG | 1 cut(s) | 3525 |
| HpyAV | CCTTC | 6 cut(s) | 663, 1164, 1380, 1567, 2190, 2879 |
| HpyCH4IV | ACGT | 3 cut(s) | 697, 2092, 2826 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 242, 494, 1130, 1139, 1742, 2164, 3548, 3901, 3940 |
| HpySE526I | ACGT | 3 cut(s) | 697, 2092, 2826 |
| Hsp92I | GRCGYC | 1 cut(s) | 3997 |
| HspAI | GCGC | 3 cut(s) | 2408, 2537, 3322 |
| KpnI | GGTACC | 1 cut(s) | 4061 |
| KroI | GCCGGC | 1 cut(s) | 2355 |
| KroNI | GCCGGC | 1 cut(s) | 2357 |
| Ksp22I | TGATCA | 1 cut(s) | 2098 |
| LguI | GCTCTTC | 2 cut(s) | 1446, 3210 |
| LmnI | GCTCC | 8 cut(s) | 242, 1585, 1797, 1987, 3742, 3832, 3857, 3940 |
| Lsp1109I | GCAGC | 8 cut(s) | 337, 1154, 1468, 2392, 3082, 3563, 3940, 4028 |
| LweI | GCATC | 7 cut(s) | 497, 799, 1233, 1276, 2257, 2548, 3538 |
| MaeI | CTAG | 8 cut(s) | 141, 660, 897, 915, 1007, 1716, 2688, 3446 |
| MaeII | ACGT | 3 cut(s) | 697, 2092, 2826 |
| MaeIII | GTNAC | 8 cut(s) | 512, 531, 1049, 1065, 2942, 3454, 3608, 3700 |
| MbiI | CCGCTC | 1 cut(s) | 2008 |
| MfeI | CAATTG | 1 cut(s) | 2112 |
| MflI | RGATCY | 9 cut(s) | 184, 352, 379, 733, 802, 838, 1193, 2010, 3208 |
| MhlI | GDGCHC | 4 cut(s) | 1097, 1130, 1332, 1616 |
| MlsI | TGGCCA | 2 cut(s) | 468, 2343 |
| MluNI | TGGCCA | 2 cut(s) | 468, 2343 |
| MlyI | GAGTC | 5 cut(s) | 564, 2114, 2407, 2725, 2945 |
| MmeI | TCCRAC | 3 cut(s) | 220, 664, 3640 |
| Mox20I | TGGCCA | 2 cut(s) | 468, 2343 |
| Mph1103I | ATGCAT | 1 cut(s) | 3852 |
| MroNI | GCCGGC | 1 cut(s) | 2355 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1021, 2148 |
| MscI | TGGCCA | 2 cut(s) | 468, 2343 |
| MseI | TTAA | 8 cut(s) | 201, 2250, 2328, 2451, 2640, 3222, 3291, 3750 |
| MslI | CAYNNNNRTG | 2 cut(s) | 209, 3396 |
| Msp20I | TGGCCA | 2 cut(s) | 468, 2343 |
| MspA1I | CMGCKG | 3 cut(s) | 1118, 1745, 3073 |
| MspCI | CTTAAG | 1 cut(s) | 3221 |
| MspI | CCGG | 5 cut(s) | 182, 276, 706, 795, 2356 |
| MunI | CAATTG | 1 cut(s) | 2112 |
| Mva1269I | GAATGC | 2 cut(s) | 866, 3574 |
| MvnI | CGCG | 1 cut(s) | 2410 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 242, 494, 1130, 1139, 1742, 2164, 3548, 3901, 3940 |
| NaeI | GCCGGC | 1 cut(s) | 2357 |
| NciI | CCSGG | 3 cut(s) | 182, 707, 795 |
| NdeI | CATATG | 2 cut(s) | 63, 1687 |
| NgoMIV | GCCGGC | 1 cut(s) | 2355 |
| NmuCI | GTSAC | 3 cut(s) | 2942, 3454, 3608 |
| NsbI | TGCGCA | 1 cut(s) | 2538 |
| NsiI | ATGCAT | 1 cut(s) | 3852 |
| NspI | RCATGY | 5 cut(s) | 214, 344, 2198, 2321, 3491 |
| NspV | TTCGAA | 1 cut(s) | 3380 |
| PaeR7I | CTCGAG | 1 cut(s) | 1098 |
| PagI | TCATGA | 1 cut(s) | 2764 |
| PasI | CCCWGGG | 2 cut(s) | 1304, 2016 |
| PceI | AGGCCT | 1 cut(s) | 250 |
| PciI | ACATGT | 1 cut(s) | 2317 |
| PciSI | GCTCTTC | 2 cut(s) | 1446, 3210 |
| PctI | GAATGC | 2 cut(s) | 866, 3574 |
| PdiI | GCCGGC | 1 cut(s) | 2357 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1021, 2148 |
| PflFI | GACNNNGTC | 1 cut(s) | 573 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1291, 1691, 2350, 2726 |
| PfoI | TCCNGGA | 4 cut(s) | 180, 1189, 1794, 1894 |
| PleI | GAGTC | 5 cut(s) | 564, 2114, 2407, 2724, 2945 |
| PpsI | GAGTC | 5 cut(s) | 564, 2114, 2407, 2724, 2945 |
| Ppu21I | YACGTR | 1 cut(s) | 698 |
| PpuMI | RGGWCCY | 1 cut(s) | 2701 |
| PscI | ACATGT | 1 cut(s) | 2317 |
| PshAI | GACNNNNGTC | 1 cut(s) | 157 |
| PshBI | ATTAAT | 1 cut(s) | 2640 |
| Psp124BI | GAGCTC | 1 cut(s) | 1616 |
| Psp5II | RGGWCCY | 1 cut(s) | 2701 |
| PspEI | GGTNACC | 1 cut(s) | 531 |
| PspFI | CCCAGC | 4 cut(s) | 1986, 2563, 2597, 3948 |
| PspPI | GGNCC | 7 cut(s) | 1003, 1883, 2353, 2509, 2701, 2845, 3431 |
| PspPPI | RGGWCCY | 1 cut(s) | 2701 |
| PspXI | VCTCGAGB | 1 cut(s) | 1098 |
| PstI | CTGCAG | 1 cut(s) | 4018 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1109 |
| PsuI | RGATCY | 9 cut(s) | 184, 352, 379, 733, 802, 838, 1193, 2010, 3208 |
| PsyI | GACNNNGTC | 1 cut(s) | 573 |
| PvuII | CAGCTG | 2 cut(s) | 1118, 3073 |
| RsaI | GTAC | 8 cut(s) | 88, 130, 528, 1185, 2298, 3184, 3591, 4059 |
| RsaNI | GTAC | 8 cut(s) | 87, 129, 527, 1184, 2297, 3183, 3590, 4058 |
| RseI | CAYNNNNRTG | 2 cut(s) | 209, 3396 |
| SacI | GAGCTC | 1 cut(s) | 1616 |
| SapI | GCTCTTC | 2 cut(s) | 1446, 3210 |
| SaqAI | TTAA | 8 cut(s) | 201, 2250, 2328, 2451, 2640, 3222, 3291, 3750 |
| Sau96I | GGNCC | 7 cut(s) | 1003, 1883, 2353, 2509, 2701, 2845, 3431 |
| ScaI | AGTACT | 2 cut(s) | 130, 1185 |
| SchI | GAGTC | 5 cut(s) | 564, 2114, 2407, 2725, 2945 |
| SduI | GDGCHC | 4 cut(s) | 1097, 1130, 1332, 1616 |
| SfaNI | GCATC | 7 cut(s) | 497, 799, 1233, 1276, 2257, 2548, 3538 |
| SfcI | CTRYAG | 2 cut(s) | 628, 4014 |
| Sfr274I | CTCGAG | 1 cut(s) | 1098 |
| SfuI | TTCGAA | 1 cut(s) | 3380 |
| SinI | GGWCC | 6 cut(s) | 1003, 1883, 2509, 2701, 2845, 3431 |
| SlaI | CTCGAG | 1 cut(s) | 1098 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 209, 3396 |
| SmlI | CTYRAG | 5 cut(s) | 1098, 2285, 2311, 2743, 3221 |
| SmoI | CTYRAG | 5 cut(s) | 1098, 2285, 2311, 2743, 3221 |
| SseBI | AGGCCT | 1 cut(s) | 250 |
| SsiI | CCGC | 9 cut(s) | 304, 1745, 1973, 2008, 2117, 2410, 2499, 3529, 4003 |
| SspI | AATATT | 2 cut(s) | 199, 2248 |
| SspMI | CTAG | 8 cut(s) | 141, 660, 897, 915, 1007, 1716, 2688, 3446 |
| SstI | GAGCTC | 1 cut(s) | 1616 |
| StuI | AGGCCT | 1 cut(s) | 250 |
| StyI | CCWWGG | 6 cut(s) | 320, 896, 1006, 2512, 2682, 3051 |
| TaiI | ACGT | 3 cut(s) | 700, 2095, 2829 |
| TaqI | TCGA | 7 cut(s) | 121, 565, 1099, 1804, 1877, 2881, 3380 |
| TaqII | GACCGA | 2 cut(s) | 2661, 2930 |
| TatI | WGTACW | 3 cut(s) | 128, 1183, 3589 |
| TauI | GCSGC | 3 cut(s) | 1748, 2501, 3532 |
| Tru1I | TTAA | 8 cut(s) | 201, 2250, 2328, 2451, 2640, 3222, 3291, 3750 |
| Tru9I | TTAA | 8 cut(s) | 201, 2250, 2328, 2451, 2640, 3222, 3291, 3750 |
| TscAI | CASTG | 7 cut(s) | 612, 871, 1110, 1255, 1278, 2874, 2953 |
| TseFI | GTSAC | 3 cut(s) | 2942, 3454, 3608 |
| TseI | GCWGC | 8 cut(s) | 325, 1142, 1456, 2405, 3070, 3551, 3953, 4016 |
| Tsp45I | GTSAC | 3 cut(s) | 2942, 3454, 3608 |
| TspRI | CASTG | 7 cut(s) | 612, 871, 1110, 1255, 1278, 2874, 2953 |
| Tth111I | GACNNNGTC | 1 cut(s) | 573 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1291, 1691, 2350, 2726 |
| Vha464I | CTTAAG | 1 cut(s) | 3221 |
| VpaK11BI | GGWCC | 6 cut(s) | 1003, 1883, 2509, 2701, 2845, 3431 |
| VspI | ATTAAT | 1 cut(s) | 2640 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 547, 3903 |
| XceI | RCATGY | 5 cut(s) | 214, 344, 2198, 2321, 3491 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1877 |
| XhoI | CTCGAG | 1 cut(s) | 1098 |
| XmaJI | CCTAGG | 2 cut(s) | 896, 1006 |
| XmiI | GTMKAC | 1 cut(s) | 2591 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1021, 2148 |
| XspI | CTAG | 8 cut(s) | 141, 660, 897, 915, 1007, 1716, 2688, 3446 |
| ZrmI | AGTACT | 2 cut(s) | 130, 1185 |
| Zsp2I | ATGCAT | 1 cut(s) | 3852 |