pycom05g22670

PB1 domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
24914083 .. 24916781
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22670.2

Sequence Viewer

Length: 1416 bp
ATGGTAACTCAAGCACATCCTGATCACTCACAACCAATTGCGGAATCCGTGGATAAATTGCATGGTGAGAATGTCCCTTTGCAGTCTGAGCAGTCTGTGCAGCTGGGCTTACCTTCAAAACTATTGCACGTTGAAGATGGACTGGCATTTGCTGAAAATATTAGTAAAATGAGTTCTGATGCTTATGATGAGGGGCTTGAGTCAAAGGTACAAAAATTGGATCAGGAAATGGGCTGGCCAAAAGATAACTACAAAGACCCAAGTAGCAATGATAAAGTAGCGGCTGCGCTGACTCAACAAACTGCTGATCGGGAAACATTTGGGAAGCTTACACATGATTCTGCTTCAGTTCAACCAGAATTTAAATGGTCTGAGATTGCTGCCAATAAGGACAATGAGAATAATGCCAAGGGTCATGGACAACCATTGGCTAGGGCAGAGAACCCAGCCAAAGGTGTTGCTCATGGGGAGTCTGCTGCTGGTGCTGGCACTCCGGAGCAGGGAGACATTCTCATTGATATTAATGACCGCTTTCCGCGTGACTTCCTGTCTGATATATTTTCTAAAGCTAGAATCTCAGGGGATCTTTCTGATCTTCCTCCACTTCCTGGCGATGGAACTGGCTTGAGCTTGAACATGGAGAATCCCGAGCCTAAGCATTGGTCGTATTTCCGAAATTTGGCTCAGAATGAATTTGTAAGAAAAGATGTTTCCCTTATGGATCAGGACCATCTGGGTTTCTCATCCCCACCGACTGATATTGGATCAGGAGCTCCAGTAGATTACAGCTTTCCACCTTCGAAGTCTGATGGAGTTGTTTTTGGTCACACTGATTCCCAAATAAATTTTGATGAAGATATTCGTCAAGGTTTGCCTGCTTTAGCTGGACCAAACAAAGTGAATTTAGGTTCAGATTACAATCCTACGCCACTAAGGGGAATTGAAAGTGTGCAGCTGGATGGGGTAAATCATGGAGTAAGAGAATCAGAGTATGAGGATGGTGAGCTAAATATTCAGAACACAGGTGTACCTCTTGTCGATATTCCTTTGGAAGAATTTGATATTACTACCTTGCAGATCGATTCAGAGAATGAAGATCTTGAAGAGCTTAGGGAATTGGGTTCTGGCACATTTGGAACTGTTTATCATGGAAAATGGAGGGGAACAGATGTGGCCATTAAGCGGATAAAAAAGAGCTGTTTCACAGGGCGTTCATCAGAGCAAGAAAGACTGACTGTTGAGTTCTGGCGCGAAGCTGAAATTCTTTCGAAGCTTCACCATCCAAATGTGGTGGCATTTTATGGCGTTGTCCAGAATGGACCAGGAGGAACACTAGCCACAGTGGCCGAGTTCATGGTGAATGGTTCTCTGAGGCATGTTTTACTTAGCAAGGAAAGACATCTTGATCGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

51.61

Weight (kDa)

4.79

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 608
AccII CGCG 2 cut(s) 538, 1251
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 5 cut(s) 41, 281, 529, 536, 1183
AclWI GGATC 4 cut(s) 228, 591, 729, 772
AcoI YGGCCR 3 cut(s) 236, 1173, 1344
AcsI RAATTY 7 cut(s) 359, 676, 692, 844, 901, 1055, 1260
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 2 cut(s) 210, 1029
AfiI CCNNNNNNNGG 7 cut(s) 452, 500, 608, 614, 679, 935, 1182
AgsI TTSAA 6 cut(s) 117, 134, 353, 634, 944, 1103
AhdI GACNNNNNGTC 1 cut(s) 547
AjnI CCWGG 2 cut(s) 607, 1321
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 4 cut(s) 228, 591, 729, 772
Ama87I CYCGRG 1 cut(s) 647
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 3 cut(s) 236, 1173, 1344
ApeKI GCWGC 5 cut(s) 100, 284, 380, 476, 952
ApoI RAATTY 7 cut(s) 359, 676, 692, 844, 901, 1055, 1260
AseI ATTAAT 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 858
AspLEI GCGC 2 cut(s) 289, 1251
AspS9I GGNCC 3 cut(s) 727, 887, 1319
AsuHPI GGTGA 4 cut(s) 77, 1013, 1268, 1369
AsuII TTCGAA 2 cut(s) 800, 1268
AvaI CYCGRG 1 cut(s) 647
AvaII GGWCC 3 cut(s) 727, 887, 1319
BaeI ACNNNNGTAYC 2 cut(s) 1011, 1044
BalI TGGCCA 2 cut(s) 238, 1175
BanII GRGCYC 1 cut(s) 775
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 5 cut(s) 112, 271, 367, 463, 964
BccI CCATC 7 cut(s) 131, 608, 738, 803, 953, 992, 1287
BciT130I CCWGG 2 cut(s) 609, 1323
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 3 cut(s) 432, 570, 1334
BglI GCCNNNNNGGC 1 cut(s) 1343
BglII AGATCT 1 cut(s) 1096
BisI GCNGC 6 cut(s) 101, 282, 285, 381, 477, 953
BlsI GCNGC 6 cut(s) 102, 283, 286, 382, 478, 954
Bme1390I CCNGG 2 cut(s) 609, 1323
Bme18I GGWCC 3 cut(s) 727, 887, 1319
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 647
BmgT120I GGNCC 3 cut(s) 727, 887, 1319
BmrFI CCNGG 2 cut(s) 609, 1323
BmsI GCATC 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 495, 527
BpmI CTGGAG 1 cut(s) 759
Bpu10I CCTNAGC 2 cut(s) 654, 1109
Bpu14I TTCGAA 2 cut(s) 800, 1268
BpuEI CTTGAG 2 cut(s) 218, 646
Bsa29I ATCGAT 2 cut(s) 1080, 1408
BsaBI GATNNNNATC 1 cut(s) 918
BsaJI CCNNGG 2 cut(s) 48, 408
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 762, 792
Bsc4I CCNNNNNNNGG 7 cut(s) 452, 500, 608, 614, 679, 935, 1182
Bse1I ACTGG 3 cut(s) 147, 625, 776
Bse3DI GCAATG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 918
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 2 cut(s) 609, 1323
BseCI ATCGAT 2 cut(s) 1080, 1408
BseDI CCNNGG 2 cut(s) 48, 408
BseGI GGATG 5 cut(s) 16, 743, 964, 1003, 1279
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 7 cut(s) 452, 500, 608, 614, 679, 935, 1182
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 5 cut(s) 78, 363, 591, 698, 1361
BseNI ACTGG 3 cut(s) 147, 625, 776
BseXI GCAGC 5 cut(s) 112, 271, 367, 463, 964
BseYI CCCAGC 2 cut(s) 103, 445
BsgI GTGCAG 2 cut(s) 119, 971
Bsh1236I CGCG 2 cut(s) 538, 1251
Bsh1285I CGRYCG 1 cut(s) 1412
BshFI GGCC 3 cut(s) 238, 1175, 1346
BshVI ATCGAT 2 cut(s) 1080, 1408
BsiEI CGRYCG 1 cut(s) 1412
BsiHKAI GWGCWC 1 cut(s) 775
BsiHKCI CYCGRG 1 cut(s) 647
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 7 cut(s) 452, 500, 608, 614, 679, 935, 1182
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 3 cut(s) 238, 1175, 1346
BsoBI CYCGRG 1 cut(s) 647
Bsp119I TTCGAA 2 cut(s) 800, 1268
Bsp1286I GDGCHC 1 cut(s) 775
Bsp13I TCCGGA 1 cut(s) 493
BspACI CCGC 5 cut(s) 41, 281, 529, 536, 1183
BspANI GGCC 3 cut(s) 238, 1175, 1346
BspCNI CTCAG 5 cut(s) 79, 364, 590, 697, 1362
BspDI ATCGAT 2 cut(s) 1080, 1408
BspEI TCCGGA 1 cut(s) 493
BspFNI CGCG 2 cut(s) 538, 1251
BspPI GGATC 4 cut(s) 228, 591, 729, 772
BspQI GCTCTTC 1 cut(s) 1098
BspT104I TTCGAA 2 cut(s) 800, 1268
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 3 cut(s) 147, 625, 776
BssECI CCNNGG 2 cut(s) 48, 408
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 2 cut(s) 609, 1323
Bst4CI ACNGT 3 cut(s) 1141, 1237, 1342
Bst6I CTCTTC 1 cut(s) 1098
BstAPI GCANNNNNTGC 1 cut(s) 97
BstBI TTCGAA 2 cut(s) 800, 1268
BstC8I GCNNGC 3 cut(s) 236, 487, 876
BstDEI CTNAG 9 cut(s) 87, 372, 577, 654, 684, 932, 1109, 1370, 1385
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 5 cut(s) 16, 743, 964, 1003, 1279
BstFNI CGCG 2 cut(s) 538, 1251
BstHHI GCGC 2 cut(s) 289, 1251
BstMAI GTCTC 1 cut(s) 498
BstMCI CGRYCG 1 cut(s) 1412
BstMWI GCNNNNNNNGC 4 cut(s) 88, 97, 482, 1343
BstNI CCWGG 2 cut(s) 609, 1323
BstNSI RCATGY 1 cut(s) 1379
BstSCI CCNGG 2 cut(s) 607, 1321
BstUI CGCG 2 cut(s) 538, 1251
BstV1I GCAGC 5 cut(s) 112, 271, 367, 463, 964
BstX2I RGATCY 2 cut(s) 583, 1096
BstYI RGATCY 2 cut(s) 583, 1096
Bsu15I ATCGAT 2 cut(s) 1080, 1408
BsuRI GGCC 3 cut(s) 238, 1175, 1346
BsuTUI ATCGAT 2 cut(s) 1080, 1408
BtgI CCRYGG 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 627
BtsCI GGATG 5 cut(s) 16, 743, 964, 1003, 1279
BtsIMutI CAGTG 2 cut(s) 828, 1347
Cac8I GCNNGC 3 cut(s) 236, 487, 876
CfoI GCGC 2 cut(s) 289, 1251
Cfr13I GGNCC 3 cut(s) 727, 887, 1319
ClaI ATCGAT 2 cut(s) 1080, 1408
Csp6I GTAC 2 cut(s) 209, 1028
CspCI CAANNNNNGTGG 2 cut(s) 1272, 1307
CviAII CATG 9 cut(s) 62, 335, 416, 464, 637, 971, 1148, 1354, 1376
CviQI GTAC 2 cut(s) 209, 1028
DdeI CTNAG 9 cut(s) 87, 372, 577, 654, 684, 932, 1109, 1370, 1385
DraI TTTAAA 1 cut(s) 364
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 3 cut(s) 236, 1173, 1344
Eam1104I CTCTTC 1 cut(s) 1098
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 1098
Ecl136II GAGCTC 1 cut(s) 773
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 775
Eco47I GGWCC 3 cut(s) 727, 887, 1319
Eco53kI GAGCTC 1 cut(s) 773
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 647
EcoICRI GAGCTC 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 607, 1321
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 9 cut(s) 65, 338, 419, 467, 640, 974, 1151, 1357, 1379
FaqI GGGAC 1 cut(s) 59
FatI CATG 9 cut(s) 61, 334, 415, 463, 636, 970, 1147, 1353, 1375
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 6 cut(s) 101, 282, 285, 381, 477, 953
FokI GGATG 5 cut(s) 3, 730, 971, 1010, 1266
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 6 cut(s) 101, 282, 285, 381, 477, 953
FspBI CTAG 3 cut(s) 432, 570, 1334
GlaI GCGC 2 cut(s) 288, 1250
GluI GCNGC 6 cut(s) 101, 282, 285, 381, 477, 953
GsaI CCCAGC 2 cut(s) 107, 449
GsuI CTGGAG 1 cut(s) 759
HaeIII GGCC 3 cut(s) 238, 1175, 1346
HapII CCGG 1 cut(s) 494
HhaI GCGC 2 cut(s) 289, 1251
Hin1II CATG 9 cut(s) 65, 338, 419, 467, 640, 974, 1151, 1357, 1379
Hin6I GCGC 2 cut(s) 287, 1249
HinP1I GCGC 2 cut(s) 287, 1249
HindIII AAGCTT 2 cut(s) 326, 1271
HpaII CCGG 1 cut(s) 494
HphI GGTGA 4 cut(s) 77, 1013, 1268, 1369
Hpy166II GTNNAC 1 cut(s) 1028
Hpy8I GTNNAC 1 cut(s) 1028
HpyAV CCTTC 2 cut(s) 123, 807
HpyCH4III ACNGT 3 cut(s) 1141, 1237, 1342
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 6 cut(s) 61, 82, 100, 127, 952, 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 97, 482, 1343
HpyF3I CTNAG 9 cut(s) 87, 372, 577, 654, 684, 932, 1109, 1370, 1385
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 9 cut(s) 65, 338, 419, 467, 640, 974, 1151, 1357, 1379
HspAI GCGC 2 cut(s) 287, 1249
Kpn2I TCCGGA 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 22
LguI GCTCTTC 1 cut(s) 1098
LmnI GCTCC 3 cut(s) 496, 770, 778
Lsp1109I GCAGC 5 cut(s) 112, 271, 367, 463, 964
LweI GCATC 1 cut(s) 169
MaeI CTAG 3 cut(s) 432, 570, 1334
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 3 cut(s) 4, 539, 824
MboII GAAGA 6 cut(s) 146, 587, 866, 1064, 1106, 1115
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 2 cut(s) 583, 1096
MhlI GDGCHC 1 cut(s) 775
MlsI TGGCCA 2 cut(s) 238, 1175
MluNI TGGCCA 2 cut(s) 238, 1175
MlyI GAGTC 3 cut(s) 209, 286, 479
MnlI CCTC 7 cut(s) 184, 609, 988, 1041, 1152, 1319, 1365
Mox20I TGGCCA 2 cut(s) 238, 1175
MroI TCCGGA 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 858
MscI TGGCCA 2 cut(s) 238, 1175
MseI TTAA 3 cut(s) 363, 522, 1179
MslI CAYNNNNRTG 1 cut(s) 1284
Msp20I TGGCCA 2 cut(s) 238, 1175
MspA1I CMGCKG 2 cut(s) 103, 955
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 2 cut(s) 609, 1323
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 2 cut(s) 609, 1323
MvnI CGCG 2 cut(s) 538, 1251
MwoI GCNNNNNNNGC 4 cut(s) 88, 97, 482, 1343
NlaIII CATG 9 cut(s) 65, 338, 419, 467, 640, 974, 1151, 1357, 1379
NmeAIII GCCGAG 1 cut(s) 1372
NmuCI GTSAC 2 cut(s) 539, 824
NspI RCATGY 1 cut(s) 1379
NspV TTCGAA 2 cut(s) 800, 1268
PciSI GCTCTTC 1 cut(s) 1098
PdmI GAANNNNTTC 1 cut(s) 858
PfeI GAWTC 7 cut(s) 44, 338, 573, 643, 833, 983, 1082
PflMI CCANNNNNTGG 1 cut(s) 608
PkrI GCNGC 6 cut(s) 102, 283, 286, 382, 478, 954
Ple19I CGATCG 1 cut(s) 1412
PleI GAGTC 3 cut(s) 208, 286, 478
PpsI GAGTC 3 cut(s) 208, 286, 478
PshBI ATTAAT 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 775
Psp6I CCWGG 2 cut(s) 607, 1321
PspFI CCCAGC 2 cut(s) 103, 445
PspGI CCWGG 2 cut(s) 607, 1321
PspPI GGNCC 3 cut(s) 727, 887, 1319
PsrI GAACNNNNNNTAC 2 cut(s) 157, 189
PsuI RGATCY 2 cut(s) 583, 1096
PvuI CGATCG 1 cut(s) 1412
PvuII CAGCTG 2 cut(s) 103, 955
RsaI GTAC 2 cut(s) 210, 1029
RsaNI GTAC 2 cut(s) 209, 1028
RseI CAYNNNNRTG 1 cut(s) 1284
SacI GAGCTC 1 cut(s) 775
SapI GCTCTTC 1 cut(s) 1098
SaqAI TTAA 3 cut(s) 363, 522, 1179
SatI GCNGC 6 cut(s) 101, 282, 285, 381, 477, 953
Sau96I GGNCC 3 cut(s) 727, 887, 1319
SchI GAGTC 3 cut(s) 209, 286, 479
ScrFI CCNGG 2 cut(s) 609, 1323
SduI GDGCHC 1 cut(s) 775
SfaNI GCATC 1 cut(s) 169
SfuI TTCGAA 2 cut(s) 800, 1268
SinI GGWCC 3 cut(s) 727, 887, 1319
SmiI ATTTAAAT 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 1284
SmlI CTYRAG 3 cut(s) 9, 197, 625
SmoI CTYRAG 3 cut(s) 9, 197, 625
SsiI CCGC 5 cut(s) 41, 281, 529, 536, 1183
SspI AATATT 2 cut(s) 160, 1012
SspMI CTAG 3 cut(s) 432, 570, 1334
SstI GAGCTC 1 cut(s) 775
StyD4I CCNGG 2 cut(s) 607, 1321
StyI CCWWGG 1 cut(s) 408
SwaI ATTTAAAT 1 cut(s) 364
TaaI ACNGT 3 cut(s) 1141, 1237, 1342
TaiI ACGT 1 cut(s) 132
TaqI TCGA 5 cut(s) 800, 1038, 1080, 1268, 1408
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 7 cut(s) 44, 338, 573, 643, 833, 983, 1082
Tru1I TTAA 3 cut(s) 363, 522, 1179
Tru9I TTAA 3 cut(s) 363, 522, 1179
TscAI CASTG 2 cut(s) 835, 1347
TseFI GTSAC 2 cut(s) 539, 824
TseI GCWGC 5 cut(s) 100, 284, 380, 476, 952
Tsp45I GTSAC 2 cut(s) 539, 824
TspDTI ATGAA 5 cut(s) 705, 867, 1107, 1203, 1342
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 2 cut(s) 835, 1347
Van91I CCANNNNNTGG 1 cut(s) 608
VpaK11BI GGWCC 3 cut(s) 727, 887, 1319
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 7 cut(s) 359, 676, 692, 844, 901, 1055, 1260
XceI RCATGY 1 cut(s) 1379
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 858
XspI CTAG 3 cut(s) 432, 570, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.