PB1 domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G35050 AT2G35050 |
| fragaria_vesca | FvH4_3g12590 FvH4_3g12590 FvH4_3g12590 |
| malus_domestica | MD05G1249500.v1.1 MD10G1168200.v1.1 MD10G1229900.v1.1 |
| prunus_persica | Prupe.4G114600_v2.0.a1 Prupe.4G114600_v2.0.a1 |
| pyrus_communis | pycom05g22660 pycom05g22670 pycom10g19340 pycom10g19350 |
| rosa_chinensis | RchiOBHm_Chr2g0086691 RchiOBHm_Chr5g0020551 |
| rosa_laevigata | RLG00000032538 |
| rosa_multiflora | Rmu_sc0004626.1_g000009 Rmu_sc0009745.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00057740 Rroxscaffold_4G00315010 |
| rosa_rugosa | Rorug01G0468600 Rorug05G0060400 Rorug05G0060500 Rorug05G0060600 Rorug05G0060600 |
| rosa_samantha | Rh2AG020600 Rh2BG020400 Rh5AG151100 Rh5BG150500 Rh5CG162000 Rh5DG149900 |
| rosa_wichuraiana | Rw5G013370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 608 |
| AccII | CGCG | 2 cut(s) | 538, 1251 |
| AccIII | TCCGGA | 1 cut(s) | 493 |
| AciI | CCGC | 5 cut(s) | 41, 281, 529, 536, 1183 |
| AclWI | GGATC | 4 cut(s) | 228, 591, 729, 772 |
| AcoI | YGGCCR | 3 cut(s) | 236, 1173, 1344 |
| AcsI | RAATTY | 7 cut(s) | 359, 676, 692, 844, 901, 1055, 1260 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AfaI | GTAC | 2 cut(s) | 210, 1029 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 452, 500, 608, 614, 679, 935, 1182 |
| AgsI | TTSAA | 6 cut(s) | 117, 134, 353, 634, 944, 1103 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 547 |
| AjnI | CCWGG | 2 cut(s) | 607, 1321 |
| Alw21I | GWGCWC | 1 cut(s) | 775 |
| Alw26I | GTCTC | 1 cut(s) | 498 |
| AlwI | GGATC | 4 cut(s) | 228, 591, 729, 772 |
| Ama87I | CYCGRG | 1 cut(s) | 647 |
| Aor13HI | TCCGGA | 1 cut(s) | 493 |
| AoxI | GGCC | 3 cut(s) | 236, 1173, 1344 |
| ApeKI | GCWGC | 5 cut(s) | 100, 284, 380, 476, 952 |
| ApoI | RAATTY | 7 cut(s) | 359, 676, 692, 844, 901, 1055, 1260 |
| AseI | ATTAAT | 1 cut(s) | 522 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 858 |
| AspLEI | GCGC | 2 cut(s) | 289, 1251 |
| AspS9I | GGNCC | 3 cut(s) | 727, 887, 1319 |
| AsuHPI | GGTGA | 4 cut(s) | 77, 1013, 1268, 1369 |
| AsuII | TTCGAA | 2 cut(s) | 800, 1268 |
| AvaI | CYCGRG | 1 cut(s) | 647 |
| AvaII | GGWCC | 3 cut(s) | 727, 887, 1319 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1011, 1044 |
| BalI | TGGCCA | 2 cut(s) | 238, 1175 |
| BanII | GRGCYC | 1 cut(s) | 775 |
| Bbv12I | GWGCWC | 1 cut(s) | 775 |
| BbvI | GCAGC | 5 cut(s) | 112, 271, 367, 463, 964 |
| BccI | CCATC | 7 cut(s) | 131, 608, 738, 803, 953, 992, 1287 |
| BciT130I | CCWGG | 2 cut(s) | 609, 1323 |
| BclI | TGATCA | 1 cut(s) | 22 |
| BcoDI | GTCTC | 1 cut(s) | 498 |
| BfaI | CTAG | 3 cut(s) | 432, 570, 1334 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1343 |
| BglII | AGATCT | 1 cut(s) | 1096 |
| BisI | GCNGC | 6 cut(s) | 101, 282, 285, 381, 477, 953 |
| BlsI | GCNGC | 6 cut(s) | 102, 283, 286, 382, 478, 954 |
| Bme1390I | CCNGG | 2 cut(s) | 609, 1323 |
| Bme18I | GGWCC | 3 cut(s) | 727, 887, 1319 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 547 |
| BmeT110I | CYCGRG | 1 cut(s) | 647 |
| BmgT120I | GGNCC | 3 cut(s) | 727, 887, 1319 |
| BmrFI | CCNGG | 2 cut(s) | 609, 1323 |
| BmsI | GCATC | 1 cut(s) | 169 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 495, 527 |
| BpmI | CTGGAG | 1 cut(s) | 759 |
| Bpu10I | CCTNAGC | 2 cut(s) | 654, 1109 |
| Bpu14I | TTCGAA | 2 cut(s) | 800, 1268 |
| BpuEI | CTTGAG | 2 cut(s) | 218, 646 |
| Bsa29I | ATCGAT | 2 cut(s) | 1080, 1408 |
| BsaBI | GATNNNNATC | 1 cut(s) | 918 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 408 |
| BsaWI | WCCGGW | 1 cut(s) | 493 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 762, 792 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 452, 500, 608, 614, 679, 935, 1182 |
| Bse1I | ACTGG | 3 cut(s) | 147, 625, 776 |
| Bse3DI | GCAATG | 1 cut(s) | 274 |
| Bse8I | GATNNNNATC | 1 cut(s) | 918 |
| BseAI | TCCGGA | 1 cut(s) | 493 |
| BseBI | CCWGG | 2 cut(s) | 609, 1323 |
| BseCI | ATCGAT | 2 cut(s) | 1080, 1408 |
| BseDI | CCNNGG | 2 cut(s) | 48, 408 |
| BseGI | GGATG | 5 cut(s) | 16, 743, 964, 1003, 1279 |
| BseJI | GATNNNNATC | 1 cut(s) | 918 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 452, 500, 608, 614, 679, 935, 1182 |
| BseMI | GCAATG | 1 cut(s) | 274 |
| BseMII | CTCAG | 5 cut(s) | 78, 363, 591, 698, 1361 |
| BseNI | ACTGG | 3 cut(s) | 147, 625, 776 |
| BseXI | GCAGC | 5 cut(s) | 112, 271, 367, 463, 964 |
| BseYI | CCCAGC | 2 cut(s) | 103, 445 |
| BsgI | GTGCAG | 2 cut(s) | 119, 971 |
| Bsh1236I | CGCG | 2 cut(s) | 538, 1251 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1412 |
| BshFI | GGCC | 3 cut(s) | 238, 1175, 1346 |
| BshVI | ATCGAT | 2 cut(s) | 1080, 1408 |
| BsiEI | CGRYCG | 1 cut(s) | 1412 |
| BsiHKAI | GWGCWC | 1 cut(s) | 775 |
| BsiHKCI | CYCGRG | 1 cut(s) | 647 |
| BsiSI | CCGG | 1 cut(s) | 494 |
| BslFI | GGGAC | 1 cut(s) | 59 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 452, 500, 608, 614, 679, 935, 1182 |
| BsmAI | GTCTC | 1 cut(s) | 498 |
| BsmFI | GGGAC | 1 cut(s) | 59 |
| BsnI | GGCC | 3 cut(s) | 238, 1175, 1346 |
| BsoBI | CYCGRG | 1 cut(s) | 647 |
| Bsp119I | TTCGAA | 2 cut(s) | 800, 1268 |
| Bsp1286I | GDGCHC | 1 cut(s) | 775 |
| Bsp13I | TCCGGA | 1 cut(s) | 493 |
| BspACI | CCGC | 5 cut(s) | 41, 281, 529, 536, 1183 |
| BspANI | GGCC | 3 cut(s) | 238, 1175, 1346 |
| BspCNI | CTCAG | 5 cut(s) | 79, 364, 590, 697, 1362 |
| BspDI | ATCGAT | 2 cut(s) | 1080, 1408 |
| BspEI | TCCGGA | 1 cut(s) | 493 |
| BspFNI | CGCG | 2 cut(s) | 538, 1251 |
| BspPI | GGATC | 4 cut(s) | 228, 591, 729, 772 |
| BspQI | GCTCTTC | 1 cut(s) | 1098 |
| BspT104I | TTCGAA | 2 cut(s) | 800, 1268 |
| BsrDI | GCAATG | 1 cut(s) | 274 |
| BsrI | ACTGG | 3 cut(s) | 147, 625, 776 |
| BssECI | CCNNGG | 2 cut(s) | 48, 408 |
| BssT1I | CCWWGG | 1 cut(s) | 408 |
| Bst2UI | CCWGG | 2 cut(s) | 609, 1323 |
| Bst4CI | ACNGT | 3 cut(s) | 1141, 1237, 1342 |
| Bst6I | CTCTTC | 1 cut(s) | 1098 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 97 |
| BstBI | TTCGAA | 2 cut(s) | 800, 1268 |
| BstC8I | GCNNGC | 3 cut(s) | 236, 487, 876 |
| BstDEI | CTNAG | 9 cut(s) | 87, 372, 577, 654, 684, 932, 1109, 1370, 1385 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 5 cut(s) | 16, 743, 964, 1003, 1279 |
| BstFNI | CGCG | 2 cut(s) | 538, 1251 |
| BstHHI | GCGC | 2 cut(s) | 289, 1251 |
| BstMAI | GTCTC | 1 cut(s) | 498 |
| BstMCI | CGRYCG | 1 cut(s) | 1412 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 88, 97, 482, 1343 |
| BstNI | CCWGG | 2 cut(s) | 609, 1323 |
| BstNSI | RCATGY | 1 cut(s) | 1379 |
| BstSCI | CCNGG | 2 cut(s) | 607, 1321 |
| BstUI | CGCG | 2 cut(s) | 538, 1251 |
| BstV1I | GCAGC | 5 cut(s) | 112, 271, 367, 463, 964 |
| BstX2I | RGATCY | 2 cut(s) | 583, 1096 |
| BstYI | RGATCY | 2 cut(s) | 583, 1096 |
| Bsu15I | ATCGAT | 2 cut(s) | 1080, 1408 |
| BsuRI | GGCC | 3 cut(s) | 238, 1175, 1346 |
| BsuTUI | ATCGAT | 2 cut(s) | 1080, 1408 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtgZI | GCGATG | 1 cut(s) | 627 |
| BtsCI | GGATG | 5 cut(s) | 16, 743, 964, 1003, 1279 |
| BtsIMutI | CAGTG | 2 cut(s) | 828, 1347 |
| Cac8I | GCNNGC | 3 cut(s) | 236, 487, 876 |
| CfoI | GCGC | 2 cut(s) | 289, 1251 |
| Cfr13I | GGNCC | 3 cut(s) | 727, 887, 1319 |
| ClaI | ATCGAT | 2 cut(s) | 1080, 1408 |
| Csp6I | GTAC | 2 cut(s) | 209, 1028 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1272, 1307 |
| CviAII | CATG | 9 cut(s) | 62, 335, 416, 464, 637, 971, 1148, 1354, 1376 |
| CviQI | GTAC | 2 cut(s) | 209, 1028 |
| DdeI | CTNAG | 9 cut(s) | 87, 372, 577, 654, 684, 932, 1109, 1370, 1385 |
| DraI | TTTAAA | 1 cut(s) | 364 |
| DriI | GACNNNNNGTC | 1 cut(s) | 547 |
| EaeI | YGGCCR | 3 cut(s) | 236, 1173, 1344 |
| Eam1104I | CTCTTC | 1 cut(s) | 1098 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 547 |
| EarI | CTCTTC | 1 cut(s) | 1098 |
| Ecl136II | GAGCTC | 1 cut(s) | 773 |
| Eco130I | CCWWGG | 1 cut(s) | 408 |
| Eco24I | GRGCYC | 1 cut(s) | 775 |
| Eco47I | GGWCC | 3 cut(s) | 727, 887, 1319 |
| Eco53kI | GAGCTC | 1 cut(s) | 773 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| Eco88I | CYCGRG | 1 cut(s) | 647 |
| EcoICRI | GAGCTC | 1 cut(s) | 773 |
| EcoRII | CCWGG | 2 cut(s) | 607, 1321 |
| EcoT14I | CCWWGG | 1 cut(s) | 408 |
| EcoT38I | GRGCYC | 1 cut(s) | 775 |
| ErhI | CCWWGG | 1 cut(s) | 408 |
| FaeI | CATG | 9 cut(s) | 65, 338, 419, 467, 640, 974, 1151, 1357, 1379 |
| FaqI | GGGAC | 1 cut(s) | 59 |
| FatI | CATG | 9 cut(s) | 61, 334, 415, 463, 636, 970, 1147, 1353, 1375 |
| FbaI | TGATCA | 1 cut(s) | 22 |
| Fnu4HI | GCNGC | 6 cut(s) | 101, 282, 285, 381, 477, 953 |
| FokI | GGATG | 5 cut(s) | 3, 730, 971, 1010, 1266 |
| FriOI | GRGCYC | 1 cut(s) | 775 |
| Fsp4HI | GCNGC | 6 cut(s) | 101, 282, 285, 381, 477, 953 |
| FspBI | CTAG | 3 cut(s) | 432, 570, 1334 |
| GlaI | GCGC | 2 cut(s) | 288, 1250 |
| GluI | GCNGC | 6 cut(s) | 101, 282, 285, 381, 477, 953 |
| GsaI | CCCAGC | 2 cut(s) | 107, 449 |
| GsuI | CTGGAG | 1 cut(s) | 759 |
| HaeIII | GGCC | 3 cut(s) | 238, 1175, 1346 |
| HapII | CCGG | 1 cut(s) | 494 |
| HhaI | GCGC | 2 cut(s) | 289, 1251 |
| Hin1II | CATG | 9 cut(s) | 65, 338, 419, 467, 640, 974, 1151, 1357, 1379 |
| Hin6I | GCGC | 2 cut(s) | 287, 1249 |
| HinP1I | GCGC | 2 cut(s) | 287, 1249 |
| HindIII | AAGCTT | 2 cut(s) | 326, 1271 |
| HpaII | CCGG | 1 cut(s) | 494 |
| HphI | GGTGA | 4 cut(s) | 77, 1013, 1268, 1369 |
| Hpy166II | GTNNAC | 1 cut(s) | 1028 |
| Hpy8I | GTNNAC | 1 cut(s) | 1028 |
| HpyAV | CCTTC | 2 cut(s) | 123, 807 |
| HpyCH4III | ACNGT | 3 cut(s) | 1141, 1237, 1342 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 6 cut(s) | 61, 82, 100, 127, 952, 1075 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 88, 97, 482, 1343 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 372, 577, 654, 684, 932, 1109, 1370, 1385 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92II | CATG | 9 cut(s) | 65, 338, 419, 467, 640, 974, 1151, 1357, 1379 |
| HspAI | GCGC | 2 cut(s) | 287, 1249 |
| Kpn2I | TCCGGA | 1 cut(s) | 493 |
| Ksp22I | TGATCA | 1 cut(s) | 22 |
| LguI | GCTCTTC | 1 cut(s) | 1098 |
| LmnI | GCTCC | 3 cut(s) | 496, 770, 778 |
| Lsp1109I | GCAGC | 5 cut(s) | 112, 271, 367, 463, 964 |
| LweI | GCATC | 1 cut(s) | 169 |
| MaeI | CTAG | 3 cut(s) | 432, 570, 1334 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MaeIII | GTNAC | 3 cut(s) | 4, 539, 824 |
| MboII | GAAGA | 6 cut(s) | 146, 587, 866, 1064, 1106, 1115 |
| MfeI | CAATTG | 1 cut(s) | 36 |
| MflI | RGATCY | 2 cut(s) | 583, 1096 |
| MhlI | GDGCHC | 1 cut(s) | 775 |
| MlsI | TGGCCA | 2 cut(s) | 238, 1175 |
| MluNI | TGGCCA | 2 cut(s) | 238, 1175 |
| MlyI | GAGTC | 3 cut(s) | 209, 286, 479 |
| MnlI | CCTC | 7 cut(s) | 184, 609, 988, 1041, 1152, 1319, 1365 |
| Mox20I | TGGCCA | 2 cut(s) | 238, 1175 |
| MroI | TCCGGA | 1 cut(s) | 493 |
| MroXI | GAANNNNTTC | 1 cut(s) | 858 |
| MscI | TGGCCA | 2 cut(s) | 238, 1175 |
| MseI | TTAA | 3 cut(s) | 363, 522, 1179 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1284 |
| Msp20I | TGGCCA | 2 cut(s) | 238, 1175 |
| MspA1I | CMGCKG | 2 cut(s) | 103, 955 |
| MspI | CCGG | 1 cut(s) | 494 |
| MspR9I | CCNGG | 2 cut(s) | 609, 1323 |
| MunI | CAATTG | 1 cut(s) | 36 |
| MvaI | CCWGG | 2 cut(s) | 609, 1323 |
| MvnI | CGCG | 2 cut(s) | 538, 1251 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 88, 97, 482, 1343 |
| NlaIII | CATG | 9 cut(s) | 65, 338, 419, 467, 640, 974, 1151, 1357, 1379 |
| NmeAIII | GCCGAG | 1 cut(s) | 1372 |
| NmuCI | GTSAC | 2 cut(s) | 539, 824 |
| NspI | RCATGY | 1 cut(s) | 1379 |
| NspV | TTCGAA | 2 cut(s) | 800, 1268 |
| PciSI | GCTCTTC | 1 cut(s) | 1098 |
| PdmI | GAANNNNTTC | 1 cut(s) | 858 |
| PfeI | GAWTC | 7 cut(s) | 44, 338, 573, 643, 833, 983, 1082 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 608 |
| PkrI | GCNGC | 6 cut(s) | 102, 283, 286, 382, 478, 954 |
| Ple19I | CGATCG | 1 cut(s) | 1412 |
| PleI | GAGTC | 3 cut(s) | 208, 286, 478 |
| PpsI | GAGTC | 3 cut(s) | 208, 286, 478 |
| PshBI | ATTAAT | 1 cut(s) | 522 |
| Psp124BI | GAGCTC | 1 cut(s) | 775 |
| Psp6I | CCWGG | 2 cut(s) | 607, 1321 |
| PspFI | CCCAGC | 2 cut(s) | 103, 445 |
| PspGI | CCWGG | 2 cut(s) | 607, 1321 |
| PspPI | GGNCC | 3 cut(s) | 727, 887, 1319 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 157, 189 |
| PsuI | RGATCY | 2 cut(s) | 583, 1096 |
| PvuI | CGATCG | 1 cut(s) | 1412 |
| PvuII | CAGCTG | 2 cut(s) | 103, 955 |
| RsaI | GTAC | 2 cut(s) | 210, 1029 |
| RsaNI | GTAC | 2 cut(s) | 209, 1028 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1284 |
| SacI | GAGCTC | 1 cut(s) | 775 |
| SapI | GCTCTTC | 1 cut(s) | 1098 |
| SaqAI | TTAA | 3 cut(s) | 363, 522, 1179 |
| SatI | GCNGC | 6 cut(s) | 101, 282, 285, 381, 477, 953 |
| Sau96I | GGNCC | 3 cut(s) | 727, 887, 1319 |
| SchI | GAGTC | 3 cut(s) | 209, 286, 479 |
| ScrFI | CCNGG | 2 cut(s) | 609, 1323 |
| SduI | GDGCHC | 1 cut(s) | 775 |
| SfaNI | GCATC | 1 cut(s) | 169 |
| SfuI | TTCGAA | 2 cut(s) | 800, 1268 |
| SinI | GGWCC | 3 cut(s) | 727, 887, 1319 |
| SmiI | ATTTAAAT | 1 cut(s) | 364 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1284 |
| SmlI | CTYRAG | 3 cut(s) | 9, 197, 625 |
| SmoI | CTYRAG | 3 cut(s) | 9, 197, 625 |
| SsiI | CCGC | 5 cut(s) | 41, 281, 529, 536, 1183 |
| SspI | AATATT | 2 cut(s) | 160, 1012 |
| SspMI | CTAG | 3 cut(s) | 432, 570, 1334 |
| SstI | GAGCTC | 1 cut(s) | 775 |
| StyD4I | CCNGG | 2 cut(s) | 607, 1321 |
| StyI | CCWWGG | 1 cut(s) | 408 |
| SwaI | ATTTAAAT | 1 cut(s) | 364 |
| TaaI | ACNGT | 3 cut(s) | 1141, 1237, 1342 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 5 cut(s) | 800, 1038, 1080, 1268, 1408 |
| TauI | GCSGC | 1 cut(s) | 284 |
| TfiI | GAWTC | 7 cut(s) | 44, 338, 573, 643, 833, 983, 1082 |
| Tru1I | TTAA | 3 cut(s) | 363, 522, 1179 |
| Tru9I | TTAA | 3 cut(s) | 363, 522, 1179 |
| TscAI | CASTG | 2 cut(s) | 835, 1347 |
| TseFI | GTSAC | 2 cut(s) | 539, 824 |
| TseI | GCWGC | 5 cut(s) | 100, 284, 380, 476, 952 |
| Tsp45I | GTSAC | 2 cut(s) | 539, 824 |
| TspDTI | ATGAA | 5 cut(s) | 705, 867, 1107, 1203, 1342 |
| TspGWI | ACGGA | 1 cut(s) | 37 |
| TspRI | CASTG | 2 cut(s) | 835, 1347 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 608 |
| VpaK11BI | GGWCC | 3 cut(s) | 727, 887, 1319 |
| VspI | ATTAAT | 1 cut(s) | 522 |
| XapI | RAATTY | 7 cut(s) | 359, 676, 692, 844, 901, 1055, 1260 |
| XceI | RCATGY | 1 cut(s) | 1379 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 363 |
| XmnI | GAANNNNTTC | 1 cut(s) | 858 |
| XspI | CTAG | 3 cut(s) | 432, 570, 1334 |