Rorug01G0468600

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004019
Physical Location & Seq
Reverse (-)
56104854 .. 56109254
4401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0468600.1

Sequence Viewer

Length: 1995 bp
ATGGAGAGGTCTAGATCGAAGAGATCGTACTACTATGAACAGCAGCAACACCAGGACTATGATACGGAGACCGTCGGCCGGACGAGGCCGAGGTACAACCACCACTACGCCAACGGCAACAACAGCCACCGCCACCGCGGAAGCGGCGGCGGAGGAGGTAGGGCGGCGAAGGCGCAGCAGCAGCAGCAGCAGGAGACGGCGTCGGTGACGGTGACGACGACGTATCGGATACTGTGCCACGATATGAAGGCGGGAGGGGTGATTGGGAAGTCCGGCAGCATTATCAAGTCGATCCGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTGGTTCCCGGAGACGAGGAGCGGATTATCGAGATTTCCGACACGCGGCGGCGGGACCCGGAGGGAAGGATCCCGGCGTTCTCTCCGGCGCAGGAGGCTCTGTTTCTGATCCACGAGAGGATTCTGGAGAGTGAGGTCGGCGGCGCCGATGAGGAGGATGAGTACGGCGGCGGCGGTGGAGGTGGTAGAGGAGGTGGTGGTGGGACACGTGTCGCGACGAGGCTTGTGGTGTCGAGAATGCATGTGGGGAGTTTGCTGGGGAAAGGAGGGAAGATAATAGAGCAAATGAGGATGGAGACAAAGACCCAGATTAGGGTTTTGCCAAGGGATCATAATCTGCCTCGCTGTGTTTCAATGTCTGAGGAGATTGTTCAGGTAGTAGGCGATCCGAATAATGTAAAGTCTGCTGTGGAAATTATTTCATCTCGCTTGAGGGAGAGTCAGCACCGTGACCGCAATAATTTCCATGGACGAGCACATTCACCAGAACGGTTCTTTCCTCCTGATGATGATTATATTCCTCATATGAACAATGCAGGACGTAAGTCATCCATGGATGGGGCTGGTTTTGGATCAAGATTATCTGGCCCCAATACGAGGAACAACAACTATGGCTCCCGTTCATCTGGTTATATGATGGAACCAGGGTCTGCTCCAATGGATGATAATGTACAGCCCTTTTACGGAGAAGACCTTGTGTTTCGAATGCTTTGCCCAATTGATAAAGTTGATCTTGTAGTTGGAGAGTCTGATGGAATTATAGAATTGCTTCAAAATGAAATTGGTGTGGATGTCAGGGCTACTGACCGTGTGGCCGGAGCAGATGAACAGATAATCATCATTTCTTCTGAGGAGGGTCCTGATGATGAGCTGTTTCCAGCTCAGGAAGCTTTATTGCACATCCAAACTCGCATTGTCGATCTTATACCAGACAGAGACAACATTATAACTACTAGGTTGCTTGTTTCGTCAAGTGATATTGGATGCTTAGAGGGAAGAGATGGGTCTTTATCAGACATGAGGCGACTTACTGGCGCAAATATACAAATTCTGCCCAGAGAAGAACTTCCTCTGTGTGTATCAGGGAATGATATGCTTTTACAGATAGTAGGGGAAATAAAAGCAGCTCGAGATGCTCTAGTTGAGGTGACATCAAGACTAAGGAGTCACTTATACAGGGAGTTGTTTCAAAAGGATACCATGCCGCTTTCTGTGCCTGGCCCTGCAAGCAGTGCTCTAGATTACATAAATCCTGTTCGTGAAGCTCGTACTGGAAATGGTCCTTCTATAACTACCTATCAGAATGTGCAAACTGCACAGCCATCAAAGGACTCTGGAGTGGTTGTTAGTGACGCAGTAAAGCAGAATGAAAGTGAACGGCGTGAAGATGTTCCGACTGGGATGAATAGAATACCTGTGACACTTGTCACTCGGAGTATACTTGAAGTTGTCATACCCGAGAAGGCTGTTTCAAAGCTCATAACAAAATCGAAAAACATGCTTGCTCAAATCAGCGAGTTATCAGGAGCCAGGGTAACCCTGGTAGATGATAGTCCAGAGGTAACCCAAAAGATCATTCAAATTTCAGGTACTCCAGAGCAGACTGAGAGGGCTCAGAGCTTGCTCCAGGGTTTTATTTTAAGCACACAAGAAGACGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

664

Amino Acids

73.06

Weight (kDa)

5.63

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 74 - 123 1.4e-10 KH domain
KH_1 PF00013 184 - 251 4.2e-12 KH domain
KH_1 PF00013 591 - 653 3.6e-10 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1277
AasI GACNNNNNNGTC 1 cut(s) 1494
AccB1I GGYRCC 1 cut(s) 473
AccBSI CCGCTC 1 cut(s) 352
AccI GTMKAC 1 cut(s) 1768
AccII CGCG 4 cut(s) 138, 311, 376, 545
AclWI GGATC 8 cut(s) 286, 323, 394, 407, 433, 666, 710, 910
AcoI YGGCCR 2 cut(s) 76, 1143
AcsI RAATTY 2 cut(s) 1377, 1911
AcvI CACGTG 1 cut(s) 539
AcyI GRCGYC 2 cut(s) 200, 474
AfaI GTAC 6 cut(s) 29, 95, 494, 1002, 1600, 1921
AfiI CCNNNNNNNGG 8 cut(s) 78, 312, 375, 642, 643, 888, 927, 1013
AflIII ACRYGT 2 cut(s) 536, 538
AgsI TTSAA 6 cut(s) 684, 1103, 1520, 1775, 1803, 1910
AjnI CCWGG 6 cut(s) 51, 973, 1546, 1859, 1869, 1956
AjuI GAANNNNNNNTTGG 2 cut(s) 1890, 1922
AluBI AGCT 8 cut(s) 331, 1201, 1211, 1220, 1457, 1595, 1807, 1950
AluI AGCT 8 cut(s) 331, 1201, 1211, 1220, 1457, 1595, 1807, 1950
Alw21I GWGCWC 3 cut(s) 327, 808, 1567
Alw26I GTCTC 5 cut(s) 62, 188, 336, 620, 1260
Alw44I GTGCAC 1 cut(s) 323
AlwI GGATC 8 cut(s) 286, 323, 394, 407, 433, 666, 710, 910
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 2 cut(s) 1458, 1787
AoxI GGCC 5 cut(s) 76, 86, 916, 1143, 1549
ApaLI GTGCAC 1 cut(s) 323
ApeKI GCWGC 9 cut(s) 43, 175, 178, 181, 184, 187, 276, 298, 1454
ApoI RAATTY 2 cut(s) 1377, 1911
Asp700I GAANNNNTTC 3 cut(s) 1098, 1395, 1719
AspLEI GCGC 5 cut(s) 175, 311, 421, 476, 1367
AspS9I GGNCC 5 cut(s) 385, 917, 1187, 1550, 1610
AsuC2I CCSGG 3 cut(s) 339, 389, 404
AsuHPI GGTGA 5 cut(s) 217, 223, 271, 804, 1489
AsuII TTCGAA 1 cut(s) 1033
AvaI CYCGRG 2 cut(s) 1458, 1787
AvaII GGWCC 3 cut(s) 385, 1187, 1610
BaeGI GKGCMC 1 cut(s) 327
BamHI GGATCC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 1945
BarI GAAGNNNNNNTAC 4 cut(s) 11, 43, 1767, 1799
BauI CACGAG 2 cut(s) 326, 443
BbrPI CACGTG 1 cut(s) 539
BbsI GAAGAC 2 cut(s) 1026, 1989
Bbv12I GWGCWC 3 cut(s) 327, 808, 1567
BbvI GCAGC 9 cut(s) 55, 187, 190, 193, 196, 199, 288, 310, 1466
BccI CCATC 6 cut(s) 616, 881, 961, 1076, 1325, 1660
BceAI ACGGC 4 cut(s) 130, 213, 511, 1724
BcgI CGANNNNNNTGC 4 cut(s) 1023, 1057, 1810, 1844
BciT130I CCWGG 6 cut(s) 53, 975, 1548, 1861, 1871, 1958
BciVI GTATCC 2 cut(s) 222, 1519
BcnI CCSGG 3 cut(s) 339, 389, 404
BcoDI GTCTC 5 cut(s) 62, 188, 336, 620, 1260
BfaI CTAG 4 cut(s) 12, 1284, 1469, 1568
BfoI RGCGCY 1 cut(s) 477
BfuI GTATCC 2 cut(s) 222, 1519
Bme1390I CCNGG 9 cut(s) 53, 339, 389, 404, 975, 1548, 1861, 1871, 1958
Bme18I GGWCC 3 cut(s) 385, 1187, 1610
BmeT110I CYCGRG 2 cut(s) 1458, 1787
BmgT120I GGNCC 5 cut(s) 385, 917, 1187, 1550, 1610
BmrFI CCNGG 9 cut(s) 53, 339, 389, 404, 975, 1548, 1861, 1871, 1958
BmrI ACTGGG 1 cut(s) 1737
BmsI GCATC 2 cut(s) 1304, 1453
BmuI ACTGGG 1 cut(s) 1737
BoxI GACNNNNGTC 3 cut(s) 539, 874, 1754
BpiI GAAGAC 2 cut(s) 1026, 1989
BpmI CTGGAG 4 cut(s) 476, 1686, 1908, 1940
Bpu10I CCTNAGC 1 cut(s) 1212
Bpu14I TTCGAA 1 cut(s) 1033
BpuEI CTTGAG 1 cut(s) 781
BpuMI CCSGG 3 cut(s) 339, 389, 404
BsaAI YACGTR 1 cut(s) 539
BsaBI GATNNNNATC 2 cut(s) 663, 1166
BsaHI GRCGYC 2 cut(s) 200, 474
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 9 cut(s) 89, 136, 653, 796, 882, 974, 1860, 1869, 1957
Bsc4I CCNNNNNNNGG 8 cut(s) 78, 312, 375, 642, 643, 888, 927, 1013
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 3 cut(s) 1366, 1606, 1732
Bse8I GATNNNNATC 2 cut(s) 663, 1166
BseBI CCWGG 6 cut(s) 53, 975, 1548, 1861, 1871, 1958
BseDI CCNNGG 9 cut(s) 89, 136, 653, 796, 882, 974, 1860, 1869, 1957
BseGI GGATG 9 cut(s) 493, 627, 878, 892, 997, 1126, 1230, 1319, 1737
BseJI GATNNNNATC 2 cut(s) 663, 1166
BseLI CCNNNNNNNGG 8 cut(s) 78, 312, 375, 642, 643, 888, 927, 1013
BseMII CTCAG 5 cut(s) 681, 1170, 1226, 1926, 1958
BseNI ACTGG 3 cut(s) 1366, 1606, 1732
BseRI GAGGAG 6 cut(s) 168, 362, 497, 534, 707, 1196
BseSI GKGCMC 1 cut(s) 327
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 9 cut(s) 55, 187, 190, 193, 196, 199, 288, 310, 1466
BseYI CCCAGC 1 cut(s) 586
BsgI GTGCAG 1 cut(s) 1629
Bsh1236I CGCG 4 cut(s) 138, 311, 376, 545
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 5 cut(s) 78, 88, 918, 1145, 1551
BshNI GGYRCC 1 cut(s) 473
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 3 cut(s) 327, 808, 1567
BsiHKCI CYCGRG 2 cut(s) 1458, 1787
BsiSI CCGG 9 cut(s) 79, 273, 295, 306, 339, 389, 404, 416, 1146
BslFI GGGAC 2 cut(s) 398, 547
BslI CCNNNNNNNGG 8 cut(s) 78, 312, 375, 642, 643, 888, 927, 1013
BsmAI GTCTC 5 cut(s) 62, 188, 336, 620, 1260
BsmBI CGTCTC 2 cut(s) 188, 336
BsmFI GGGAC 2 cut(s) 398, 547
BsmI GAATGC 2 cut(s) 573, 1041
BsnI GGCC 5 cut(s) 78, 88, 918, 1145, 1551
Bso31I GGTCTC 1 cut(s) 62
BsoBI CYCGRG 2 cut(s) 1458, 1787
Bsp119I TTCGAA 1 cut(s) 1033
Bsp1286I GDGCHC 4 cut(s) 327, 808, 1567, 1945
Bsp1407I TGTACA 1 cut(s) 1000
Bsp19I CCATGG 2 cut(s) 796, 882
Bsp68I TCGCGA 1 cut(s) 545
BspANI GGCC 5 cut(s) 78, 88, 918, 1145, 1551
BspCNI CTCAG 5 cut(s) 682, 1171, 1225, 1927, 1957
BspFNI CGCG 4 cut(s) 138, 311, 376, 545
BspPI GGATC 8 cut(s) 286, 323, 394, 407, 433, 666, 710, 910
BspT104I TTCGAA 1 cut(s) 1033
BspT107I GGYRCC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 1000
BsrI ACTGG 3 cut(s) 1366, 1606, 1732
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 9 cut(s) 89, 136, 653, 796, 882, 974, 1860, 1869, 1957
BssNAI GTATAC 1 cut(s) 1769
BssNI GRCGYC 2 cut(s) 200, 474
BssSI CACGAG 2 cut(s) 326, 443
BssT1I CCWWGG 3 cut(s) 653, 796, 882
Bst1107I GTATAC 1 cut(s) 1769
Bst2BI CACGAG 2 cut(s) 326, 443
Bst2UI CCWGG 6 cut(s) 53, 975, 1548, 1861, 1871, 1958
Bst4CI ACNGT 6 cut(s) 73, 211, 234, 779, 822, 1139
Bst6I CTCTTC 2 cut(s) 14, 1321
BstACI GRCGYC 2 cut(s) 200, 474
BstAPI GCANNNNNTGC 1 cut(s) 1562
BstAUI TGTACA 1 cut(s) 1000
BstBAI YACGTR 1 cut(s) 539
BstBI TTCGAA 1 cut(s) 1033
BstC8I GCNNGC 3 cut(s) 1558, 1833, 1952
BstDEI CTNAG 7 cut(s) 690, 1179, 1212, 1318, 1490, 1935, 1944
BstDSI CCRYGG 3 cut(s) 136, 796, 882
BstEII GGTNACC 2 cut(s) 1864, 1891
BstF5I GGATG 9 cut(s) 493, 627, 878, 892, 997, 1126, 1230, 1319, 1737
BstFNI CGCG 4 cut(s) 138, 311, 376, 545
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 5 cut(s) 175, 311, 421, 476, 1367
BstMAI GTCTC 5 cut(s) 62, 188, 336, 620, 1260
BstMCI CGRYCG 1 cut(s) 79
BstNI CCWGG 6 cut(s) 53, 975, 1548, 1861, 1871, 1958
BstNSI RCATGY 2 cut(s) 575, 1831
BstPAI GACNNNNGTC 3 cut(s) 539, 874, 1754
BstPI GGTNACC 2 cut(s) 1864, 1891
BstSCI CCNGG 9 cut(s) 51, 337, 387, 402, 973, 1546, 1859, 1869, 1956
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 4 cut(s) 138, 311, 376, 545
BstV1I GCAGC 9 cut(s) 55, 187, 190, 193, 196, 199, 288, 310, 1466
BstV2I GAAGAC 2 cut(s) 1026, 1989
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BstZ17I GTATAC 1 cut(s) 1769
BstZI CGGCCG 1 cut(s) 76
BsuI GTATCC 2 cut(s) 222, 1519
BsuRI GGCC 5 cut(s) 78, 88, 918, 1145, 1551
BtgI CCRYGG 3 cut(s) 136, 796, 882
BtsCI GGATG 9 cut(s) 493, 627, 878, 892, 997, 1126, 1230, 1319, 1737
BtsI GCAGTG 1 cut(s) 1567
BtsIMutI CAGTG 1 cut(s) 1567
BtuMI TCGCGA 1 cut(s) 545
Cac8I GCNNGC 3 cut(s) 1558, 1833, 1952
CaiI CAGNNNCTG 1 cut(s) 980
CfoI GCGC 5 cut(s) 175, 311, 421, 476, 1367
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 5 cut(s) 385, 917, 1187, 1550, 1610
Cfr42I CCGCGG 1 cut(s) 139
CseI GACGC 2 cut(s) 189, 1691
Csp6I GTAC 6 cut(s) 28, 94, 493, 1001, 1599, 1920
CviAII CATG 6 cut(s) 572, 797, 883, 1348, 1531, 1828
CviQI GTAC 6 cut(s) 28, 94, 493, 1001, 1599, 1920
DdeI CTNAG 7 cut(s) 690, 1179, 1212, 1318, 1490, 1935, 1944
DinI GGCGCC 1 cut(s) 475
DrdI GACNNNNNNGTC 1 cut(s) 1494
DseDI GACNNNNNNGTC 1 cut(s) 1494
EaeI YGGCCR 2 cut(s) 76, 1143
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 14, 1321
EarI CTCTTC 2 cut(s) 14, 1321
EciI GGCGGA 1 cut(s) 165
EclXI CGGCCG 1 cut(s) 76
Eco130I CCWWGG 3 cut(s) 653, 796, 882
Eco24I GRGCYC 1 cut(s) 1945
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 3 cut(s) 385, 1187, 1610
Eco52I CGGCCG 1 cut(s) 76
Eco72I CACGTG 1 cut(s) 539
Eco88I CYCGRG 2 cut(s) 1458, 1787
Eco91I GGTNACC 2 cut(s) 1864, 1891
EcoO109I RGGNCCY 2 cut(s) 385, 1187
EcoO65I GGTNACC 2 cut(s) 1864, 1891
EcoRII CCWGG 6 cut(s) 51, 973, 1546, 1859, 1869, 1956
EcoT14I CCWWGG 3 cut(s) 653, 796, 882
EcoT22I ATGCAT 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 1945
EgeI GGCGCC 1 cut(s) 475
EheI GGCGCC 1 cut(s) 475
ErhI CCWWGG 3 cut(s) 653, 796, 882
Esp3I CGTCTC 2 cut(s) 188, 336
FaeI CATG 6 cut(s) 575, 800, 886, 1351, 1534, 1831
FalI AAGNNNNNCTT 2 cut(s) 1047, 1079
FaqI GGGAC 2 cut(s) 398, 547
FatI CATG 6 cut(s) 571, 796, 882, 1347, 1530, 1827
FauI CCCGC 2 cut(s) 244, 375
FauNDI CATATG 1 cut(s) 855
FblI GTMKAC 1 cut(s) 1768
FokI GGATG 9 cut(s) 500, 634, 865, 899, 1004, 1133, 1217, 1326, 1744
FriOI GRGCYC 1 cut(s) 1945
FspBI CTAG 4 cut(s) 12, 1284, 1469, 1568
GlaI GCGC 5 cut(s) 174, 310, 420, 475, 1366
GsaI CCCAGC 1 cut(s) 590
GsuI CTGGAG 4 cut(s) 476, 1686, 1908, 1940
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 5 cut(s) 78, 88, 918, 1145, 1551
HapII CCGG 9 cut(s) 79, 273, 295, 306, 339, 389, 404, 416, 1146
HgaI GACGC 2 cut(s) 189, 1691
HhaI GCGC 5 cut(s) 175, 311, 421, 476, 1367
Hin1I GRCGYC 2 cut(s) 200, 474
Hin1II CATG 6 cut(s) 575, 800, 886, 1351, 1534, 1831
Hin6I GCGC 5 cut(s) 173, 309, 419, 474, 1365
HinP1I GCGC 5 cut(s) 173, 309, 419, 474, 1365
HindIII AAGCTT 1 cut(s) 1218
HinfI GANTC 5 cut(s) 451, 769, 1076, 1495, 1661
HpaII CCGG 9 cut(s) 79, 273, 295, 306, 339, 389, 404, 416, 1146
HphI GGTGA 5 cut(s) 217, 223, 271, 804, 1489
Hpy166II GTNNAC 3 cut(s) 325, 1706, 1769
Hpy8I GTNNAC 3 cut(s) 325, 1706, 1769
Hpy99I CGWCG 5 cut(s) 77, 205, 220, 223, 550
HpyAV CCTTC 5 cut(s) 163, 241, 390, 1623, 1786
HpyCH4III ACNGT 6 cut(s) 73, 211, 234, 779, 822, 1139
HpyCH4IV ACGT 4 cut(s) 221, 321, 538, 871
HpyCH4V TGCA 7 cut(s) 325, 571, 866, 1228, 1556, 1639, 1646
HpyF3I CTNAG 7 cut(s) 690, 1179, 1212, 1318, 1490, 1935, 1944
HpySE526I ACGT 4 cut(s) 221, 321, 538, 871
Hsp92I GRCGYC 2 cut(s) 200, 474
Hsp92II CATG 6 cut(s) 575, 800, 886, 1351, 1534, 1831
HspAI GCGC 5 cut(s) 173, 309, 419, 474, 1365
KasI GGCGCC 1 cut(s) 473
KflI GGGWCCC 1 cut(s) 385
KspI CCGCGG 1 cut(s) 139
LmnI GCTCC 6 cut(s) 349, 950, 988, 1148, 1856, 1959
Lsp1109I GCAGC 9 cut(s) 55, 187, 190, 193, 196, 199, 288, 310, 1466
LweI GCATC 2 cut(s) 1304, 1453
MaeI CTAG 4 cut(s) 12, 1284, 1469, 1568
MaeII ACGT 4 cut(s) 221, 321, 538, 871
MbiI CCGCTC 1 cut(s) 352
MboII GAAGA 8 cut(s) 31, 613, 1031, 1167, 1338, 1403, 1727, 1994
MfeI CAATTG 1 cut(s) 1047
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 4 cut(s) 327, 808, 1567, 1945
MluCI AATT 8 cut(s) 744, 790, 1047, 1086, 1094, 1110, 1377, 1911
Mly113I GGCGCC 1 cut(s) 474
MlyI GAGTC 4 cut(s) 778, 1085, 1504, 1655
MmeI TCCRAC 3 cut(s) 393, 1051, 1748
Mph1103I ATGCAT 1 cut(s) 573
MroXI GAANNNNTTC 3 cut(s) 1098, 1395, 1719
MseI TTAA 1 cut(s) 1970
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 9 cut(s) 79, 273, 295, 306, 339, 389, 404, 416, 1146
MspR9I CCNGG 9 cut(s) 53, 339, 389, 404, 975, 1548, 1861, 1871, 1958
MunI CAATTG 1 cut(s) 1047
Mva1269I GAATGC 2 cut(s) 573, 1041
MvaI CCWGG 6 cut(s) 53, 975, 1548, 1861, 1871, 1958
MvnI CGCG 4 cut(s) 138, 311, 376, 545
NarI GGCGCC 1 cut(s) 474
NciI CCSGG 3 cut(s) 339, 389, 404
NcoI CCATGG 2 cut(s) 796, 882
NdeI CATATG 1 cut(s) 855
NlaIII CATG 6 cut(s) 575, 800, 886, 1351, 1534, 1831
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 8 cut(s) 205, 211, 779, 1477, 1496, 1679, 1747, 1756
NruI TCGCGA 1 cut(s) 545
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 2 cut(s) 575, 1831
NspV TTCGAA 1 cut(s) 1033
PaeR7I CTCGAG 1 cut(s) 1458
PcsI WCGNNNNNNNCGW 5 cut(s) 23, 215, 366, 474, 1594
PctI GAATGC 2 cut(s) 573, 1041
PdmI GAANNNNTTC 3 cut(s) 1098, 1395, 1719
PfeI GAWTC 1 cut(s) 451
PflFI GACNNNGTC 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 337
PleI GAGTC 4 cut(s) 777, 1084, 1503, 1655
PluTI GGCGCC 1 cut(s) 477
PmaCI CACGTG 1 cut(s) 539
PmlI CACGTG 1 cut(s) 539
PpsI GAGTC 4 cut(s) 777, 1084, 1503, 1655
Ppu21I YACGTR 1 cut(s) 539
PpuMI RGGWCCY 2 cut(s) 385, 1187
PshAI GACNNNNGTC 3 cut(s) 539, 874, 1754
PsiI TTATAA 1 cut(s) 1277
Psp5II RGGWCCY 2 cut(s) 385, 1187
Psp6I CCWGG 6 cut(s) 51, 973, 1546, 1859, 1869, 1956
PspCI CACGTG 1 cut(s) 539
PspEI GGTNACC 2 cut(s) 1864, 1891
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 6 cut(s) 51, 973, 1546, 1859, 1869, 1956
PspPI GGNCC 5 cut(s) 385, 917, 1187, 1550, 1610
PspPPI RGGWCCY 2 cut(s) 385, 1187
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 1 cut(s) 399
PsyI GACNNNGTC 1 cut(s) 199
RruI TCGCGA 1 cut(s) 545
RsaI GTAC 6 cut(s) 29, 95, 494, 1002, 1600, 1921
RsaNI GTAC 6 cut(s) 28, 94, 493, 1001, 1599, 1920
SacII CCGCGG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 1970
Sau96I GGNCC 5 cut(s) 385, 917, 1187, 1550, 1610
SchI GAGTC 4 cut(s) 778, 1085, 1504, 1655
ScrFI CCNGG 9 cut(s) 53, 339, 389, 404, 975, 1548, 1861, 1871, 1958
SduI GDGCHC 4 cut(s) 327, 808, 1567, 1945
SfaNI GCATC 2 cut(s) 1304, 1453
SfoI GGCGCC 1 cut(s) 475
Sfr274I CTCGAG 1 cut(s) 1458
Sfr303I CCGCGG 1 cut(s) 139
SfuI TTCGAA 1 cut(s) 1033
SgrAI CRCCGGYG 1 cut(s) 305
SgrBI CCGCGG 1 cut(s) 139
SinI GGWCC 3 cut(s) 385, 1187, 1610
SlaI CTCGAG 1 cut(s) 1458
SmlI CTYRAG 2 cut(s) 760, 1458
SmoI CTYRAG 2 cut(s) 760, 1458
Sse9I AATT 8 cut(s) 744, 790, 1047, 1086, 1094, 1110, 1377, 1911
SspDI GGCGCC 1 cut(s) 473
SspMI CTAG 4 cut(s) 12, 1284, 1469, 1568
StyD4I CCNGG 9 cut(s) 51, 337, 387, 402, 973, 1546, 1859, 1869, 1956
StyI CCWWGG 3 cut(s) 653, 796, 882
TaaI ACNGT 6 cut(s) 73, 211, 234, 779, 822, 1139
TaiI ACGT 4 cut(s) 224, 324, 541, 874
TaqI TCGA 8 cut(s) 17, 290, 360, 563, 1033, 1248, 1459, 1820
TasI AATT 8 cut(s) 744, 790, 1047, 1086, 1094, 1110, 1377, 1911
TatI WGTACW 1 cut(s) 1000
TauI GCSGC 9 cut(s) 147, 150, 167, 379, 382, 474, 501, 504, 1537
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 1 cut(s) 1970
Tru9I TTAA 1 cut(s) 1970
TscAI CASTG 1 cut(s) 1567
TseFI GTSAC 8 cut(s) 205, 211, 779, 1477, 1496, 1679, 1747, 1756
TseI GCWGC 9 cut(s) 43, 175, 178, 181, 184, 187, 276, 298, 1454
Tsp45I GTSAC 8 cut(s) 205, 211, 779, 1477, 1496, 1679, 1747, 1756
TspDTI ATGAA 9 cut(s) 51, 260, 741, 872, 942, 1122, 1170, 1713, 1748
TspGWI ACGGA 2 cut(s) 80, 1029
TspRI CASTG 1 cut(s) 1567
Tth111I GACNNNGTC 1 cut(s) 199
VneI GTGCAC 1 cut(s) 323
VpaK11BI GGWCC 3 cut(s) 385, 1187, 1610
XapI RAATTY 2 cut(s) 1377, 1911
XbaI TCTAGA 2 cut(s) 11, 1567
XceI RCATGY 2 cut(s) 575, 1831
XcmI CCANNNNNNNNNTGG 1 cut(s) 1867
XhoI CTCGAG 1 cut(s) 1458
XmiI GTMKAC 1 cut(s) 1768
XmnI GAANNNNTTC 3 cut(s) 1098, 1395, 1719
XspI CTAG 4 cut(s) 12, 1284, 1469, 1568
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.