pycom10g19350

PB1 domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
22464710 .. 22467807
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19350.4

Sequence Viewer

Length: 1320 bp
ATGGAGAATCCCGAGCCTAAGCATTGGTCATATTTCCGAAATTTGGCTCAGAATGAATTTGTAAGAAAAGATGTTTCCCTTATGGATCAGGACCATCTGGGTTTCTCATCCCCACCGACCGATATTGGAGCAGAGACTCCAGTAGATTACAGCTTTCCACCTTTGAAGTCTGATGGAGTTGTTTTTGGTCACACTGACTCCCAAATAAATTTTGATGAAGATATTCGGCAAGGGTTGCCTGGTGTAGCTGGACCAAACGCCGTGAATTTAGGTTCAGTTTACAATCATACGCCACTCAAGGGAATTGAAAGTGAGCAGCTGGATGGGGTAAATCATGGAGTAAGAGAATCAGAGTATGAGAATGGTGAGCTAAATGTTCAGAACACAGGTGTACCTCTTGTCGATCTTTCTCTGGAAGAATTTGATATTACTACTTTGCAGATCATAGAGAATGAAGATCTTGAAGAGCTTAGGGAATTGGGTTCTGGCACATTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTGGCCATTAAACGAATAAAAAAGAGCTGTTTCACGGGGCGTTCATCAGAGCAAGAAAGACTGACTAATGAGTTCTGGCGCGAAGCTGAAATTCTTTCGAAGCTTCACCATCCGAATGTGGTGGCGTTTTATGGTGTTGTTCAGAATGGACCAGGAGGAACACTAGCCACGGTGACAGAGTTCATGGTGAATGGCTCTCTGAGGCATGTTTTACTTAGCAAGGAAAGACATCTTGATCGTCGTAAGCGGCTCATTATTGCGATGGATGCAGCATTTGGAATGGAATACCTACATTCAAAAAACATAGTGCACTTTGATTTGAAATGCGACAATTTACTTGTAAATTTGAAAGACCCTCAACGACCGATTTGCAAGGTAGGAGATTTTGGCTTGTCAAAAATCAAAAGAAACACCTTGGTTACTGGTGGTGTTAGGGGAACCCTACCATGGATGGCTCCGGAGCTTCTTAATGGTAGCAGCAGTAAGGTTTCTGAAAAGGTTGATGTATTCTCCTTTGGTATTGTCTTATGGGAGATTCTAACTGGTGAGGAGCCTTATGCCAACATGCATTACGGAGCAATCATAGGAGGCATTGTGAACAACACATTGAGGCCACATGTGCCACCCTATTGTGATCCTGAATGGGAGTTGCTGATGGAGCAATGCTGGGCCGGCGATCCTGTTGCTCGCCCATCGTTTACCGAAATAACCAAACGCTTGCAGGTGATGACTGCAGCTTGCCGACCTACCAAACCACAGGTTCAACCACAGAACCAGGTCCCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

440

Amino Acids

49.13

Weight (kDa)

5.51

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1243
Acc36I ACCTGC 1 cut(s) 1243
AccII CGCG 1 cut(s) 612
AccIII TCCGGA 1 cut(s) 988
AciI CCGC 1 cut(s) 778
AclWI GGATC 3 cut(s) 93, 1160, 1202
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 7 cut(s) 40, 56, 208, 265, 419, 621, 874
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 3 cut(s) 43, 299, 978
AflIII ACRYGT 1 cut(s) 1147
AgsI TTSAA 7 cut(s) 166, 308, 464, 828, 853, 880, 1295
AjnI CCWGG 3 cut(s) 238, 682, 1305
Alw21I GWGCWC 1 cut(s) 843
Alw26I GTCTC 1 cut(s) 128
Alw44I GTGCAC 1 cut(s) 839
AlwI GGATC 3 cut(s) 93, 1160, 1202
Ama87I CYCGRG 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 988
AoxI GGCC 3 cut(s) 534, 1142, 1200
ApaLI GTGCAC 1 cut(s) 839
ApeKI GCWGC 4 cut(s) 316, 800, 1008, 1265
ApoI RAATTY 7 cut(s) 40, 56, 208, 265, 419, 621, 874
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 612
AspS9I GGNCC 5 cut(s) 91, 251, 680, 1200, 1309
AsuHPI GGTGA 6 cut(s) 377, 629, 715, 730, 1088, 1267
AsuII TTCGAA 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 4 cut(s) 91, 251, 680, 1309
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BalI TGGCCA 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 843
BbvI GCAGC 4 cut(s) 328, 812, 1020, 1277
BccI CCATC 8 cut(s) 102, 167, 317, 648, 787, 976, 1180, 1231
BceAI ACGGC 1 cut(s) 245
BcgI CGANNNNNNTGC 4 cut(s) 882, 916, 1196, 1230
BciT130I CCWGG 3 cut(s) 240, 684, 1307
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 1 cut(s) 1263
BfuAI ACCTGC 1 cut(s) 1243
BglII AGATCT 1 cut(s) 457
BisI GCNGC 5 cut(s) 317, 779, 801, 1009, 1266
BlsI GCNGC 5 cut(s) 318, 780, 802, 1010, 1267
Bme1390I CCNGG 3 cut(s) 240, 684, 1307
Bme18I GGWCC 4 cut(s) 91, 251, 680, 1309
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 5 cut(s) 91, 251, 680, 1200, 1309
BmiI GGNNCC 4 cut(s) 970, 987, 1083, 1311
BmrFI CCNGG 3 cut(s) 240, 684, 1307
BmsI GCATC 1 cut(s) 787
BpmI CTGGAG 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 18, 470
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 281
BsaJI CCNNGG 3 cut(s) 699, 945, 977
BsaWI WCCGGW 1 cut(s) 988
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 1110, 1140
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 299, 978
Bse118I RCCGGY 1 cut(s) 1202
Bse1I ACTGG 3 cut(s) 140, 958, 1078
Bse3DI GCAATG 1 cut(s) 1199
BseAI TCCGGA 1 cut(s) 988
BseBI CCWGG 3 cut(s) 240, 684, 1307
BseDI CCNNGG 3 cut(s) 699, 945, 977
BseGI GGATG 5 cut(s) 107, 328, 640, 802, 987
BseLI CCNNNNNNNGG 3 cut(s) 43, 299, 978
BseMI GCAATG 1 cut(s) 1199
BseMII CTCAG 2 cut(s) 62, 722
BseNI ACTGG 3 cut(s) 140, 958, 1078
BseRI GAGGAG 1 cut(s) 1094
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 4 cut(s) 328, 812, 1020, 1277
BseYI CCCAGC 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 612
Bsh1285I CGRYCG 2 cut(s) 120, 896
BshFI GGCC 3 cut(s) 536, 1144, 1202
BsiEI CGRYCG 2 cut(s) 120, 896
BsiHKAI GWGCWC 1 cut(s) 843
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 989, 1203
BslFI GGGAC 1 cut(s) 1295
BslI CCNNNNNNNGG 3 cut(s) 43, 299, 978
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 1295
BsnI GGCC 3 cut(s) 536, 1144, 1202
BsoBI CYCGRG 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 843
Bsp13I TCCGGA 1 cut(s) 988
Bsp143I GATC 7 cut(s) 85, 403, 441, 457, 766, 1165, 1207
Bsp19I CCATGG 1 cut(s) 977
BspACI CCGC 1 cut(s) 778
BspANI GGCC 3 cut(s) 536, 1144, 1202
BspCNI CTCAG 2 cut(s) 61, 723
BspEI TCCGGA 1 cut(s) 988
BspFNI CGCG 1 cut(s) 612
BspLI GGNNCC 4 cut(s) 970, 987, 1083, 1311
BspMAI CTGCAG 1 cut(s) 1267
BspMI ACCTGC 1 cut(s) 1243
BspPI GGATC 3 cut(s) 93, 1160, 1202
BspQI GCTCTTC 1 cut(s) 459
BspT104I TTCGAA 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 1199
BsrFI RCCGGY 1 cut(s) 1202
BsrI ACTGG 3 cut(s) 140, 958, 1078
BssAI RCCGGY 1 cut(s) 1202
BssECI CCNNGG 3 cut(s) 699, 945, 977
BssMI GATC 7 cut(s) 85, 403, 441, 457, 766, 1165, 1207
BssT1I CCWWGG 2 cut(s) 945, 977
Bst2UI CCWGG 3 cut(s) 240, 684, 1307
Bst4CI ACNGT 2 cut(s) 502, 703
Bst6I CTCTTC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 4 cut(s) 1204, 1219, 1250, 1270
BstDEI CTNAG 5 cut(s) 18, 48, 470, 731, 746
BstDSI CCRYGG 2 cut(s) 699, 977
BstF5I GGATG 5 cut(s) 107, 328, 640, 802, 987
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 7 cut(s) 88, 406, 444, 460, 769, 1168, 1210
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 7 cut(s) 85, 403, 441, 457, 766, 1165, 1207
BstMCI CGRYCG 2 cut(s) 120, 896
BstMWI GCNNNNNNNGC 5 cut(s) 235, 797, 1150, 1189, 1203
BstNI CCWGG 3 cut(s) 240, 684, 1307
BstNSI RCATGY 3 cut(s) 740, 1099, 1151
BstSCI CCNGG 3 cut(s) 238, 682, 1305
BstSFI CTRYAG 1 cut(s) 1263
BstSLI GKGCMC 1 cut(s) 843
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 4 cut(s) 328, 812, 1020, 1277
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 3 cut(s) 536, 1144, 1202
BtgI CCRYGG 2 cut(s) 699, 977
BtgZI GCGATG 1 cut(s) 806
BtsCI GGATG 5 cut(s) 107, 328, 640, 802, 987
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 1243
Cac8I GCNNGC 4 cut(s) 1204, 1219, 1250, 1270
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 1202
Cfr13I GGNCC 5 cut(s) 91, 251, 680, 1200, 1309
CsiI ACCWGGT 1 cut(s) 1305
Csp6I GTAC 1 cut(s) 392
CviAII CATG 7 cut(s) 335, 509, 715, 737, 978, 1096, 1148
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 5 cut(s) 18, 48, 470, 731, 746
DpnI GATC 7 cut(s) 87, 405, 443, 459, 768, 1167, 1209
DpnII GATC 7 cut(s) 85, 403, 441, 457, 766, 1165, 1207
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 2 cut(s) 945, 977
Eco47I GGWCC 4 cut(s) 91, 251, 680, 1309
Eco88I CYCGRG 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 1309
EcoRII CCWGG 3 cut(s) 238, 682, 1305
EcoT14I CCWWGG 2 cut(s) 945, 977
EcoT22I ATGCAT 1 cut(s) 1101
ErhI CCWWGG 2 cut(s) 945, 977
FaeI CATG 7 cut(s) 338, 512, 718, 740, 981, 1099, 1151
FaqI GGGAC 1 cut(s) 1295
FatI CATG 7 cut(s) 334, 508, 714, 736, 977, 1095, 1147
Fnu4HI GCNGC 5 cut(s) 317, 779, 801, 1009, 1266
FokI GGATG 5 cut(s) 94, 335, 627, 809, 994
Fsp4HI GCNGC 5 cut(s) 317, 779, 801, 1009, 1266
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 611
GluI GCNGC 5 cut(s) 317, 779, 801, 1009, 1266
GsaI CCCAGC 1 cut(s) 1201
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 3 cut(s) 536, 1144, 1202
HapII CCGG 2 cut(s) 989, 1203
HhaI GCGC 1 cut(s) 612
Hin1II CATG 7 cut(s) 338, 512, 718, 740, 981, 1099, 1151
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 5 cut(s) 7, 136, 197, 347, 1066
HpaII CCGG 2 cut(s) 989, 1203
HphI GGTGA 6 cut(s) 377, 629, 715, 730, 1088, 1267
Hpy166II GTNNAC 5 cut(s) 280, 392, 841, 1129, 1230
Hpy188III TCNNGA 7 cut(s) 11, 89, 413, 461, 764, 989, 1169
Hpy8I GTNNAC 5 cut(s) 280, 392, 841, 1129, 1230
Hpy99I CGWCG 1 cut(s) 774
HpyCH4III ACNGT 2 cut(s) 502, 703
HpyCH4V TGCA 7 cut(s) 439, 800, 841, 903, 1099, 1252, 1265
HpyF10VI GCNNNNNNNGC 5 cut(s) 235, 797, 1150, 1189, 1203
HpyF3I CTNAG 5 cut(s) 18, 48, 470, 731, 746
Hsp92II CATG 7 cut(s) 338, 512, 718, 740, 981, 1099, 1151
HspAI GCGC 1 cut(s) 610
Kpn2I TCCGGA 1 cut(s) 988
KroI GCCGGC 1 cut(s) 1202
KroNI GCCGGC 1 cut(s) 1204
Kzo9I GATC 7 cut(s) 85, 403, 441, 457, 766, 1165, 1207
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 6 cut(s) 128, 991, 991, 1081, 1106, 1189
Lsp1109I GCAGC 4 cut(s) 328, 812, 1020, 1277
LweI GCATC 1 cut(s) 787
MabI ACCWGGT 1 cut(s) 1305
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 3 cut(s) 188, 703, 949
MalI GATC 7 cut(s) 87, 405, 443, 459, 768, 1167, 1209
MboI GATC 7 cut(s) 85, 403, 441, 457, 766, 1165, 1207
MboII GAAGA 4 cut(s) 230, 428, 467, 476
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 843
MlsI TGGCCA 1 cut(s) 536
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 2 cut(s) 130, 191
MnlI CCTC 8 cut(s) 405, 513, 680, 726, 897, 1072, 1112, 1134
Mox20I TGGCCA 1 cut(s) 536
Mph1103I ATGCAT 1 cut(s) 1101
MroI TCCGGA 1 cut(s) 988
MroNI GCCGGC 1 cut(s) 1202
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 536
MseI TTAA 2 cut(s) 540, 999
MslI CAYNNNNRTG 1 cut(s) 645
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 2 cut(s) 989, 1203
MspR9I CCNGG 3 cut(s) 240, 684, 1307
MvaI CCWGG 3 cut(s) 240, 684, 1307
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 5 cut(s) 235, 797, 1150, 1189, 1203
NaeI GCCGGC 1 cut(s) 1204
NcoI CCATGG 1 cut(s) 977
NdeII GATC 7 cut(s) 85, 403, 441, 457, 766, 1165, 1207
NgoMIV GCCGGC 1 cut(s) 1202
NlaIII CATG 7 cut(s) 338, 512, 718, 740, 981, 1099, 1151
NlaIV GGNNCC 4 cut(s) 970, 987, 1083, 1311
NmuCI GTSAC 2 cut(s) 188, 703
NsiI ATGCAT 1 cut(s) 1101
NspI RCATGY 3 cut(s) 740, 1099, 1151
NspV TTCGAA 1 cut(s) 629
PaqCI CACCTGC 1 cut(s) 1243
PciI ACATGT 1 cut(s) 1147
PciSI GCTCTTC 1 cut(s) 459
PdiI GCCGGC 1 cut(s) 1204
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 7, 347, 1066
PkrI GCNGC 5 cut(s) 318, 780, 802, 1010, 1267
PleI GAGTC 2 cut(s) 130, 191
PpsI GAGTC 2 cut(s) 130, 191
PpuMI RGGWCCY 1 cut(s) 1309
PscI ACATGT 1 cut(s) 1147
Psp5II RGGWCCY 1 cut(s) 1309
Psp6I CCWGG 3 cut(s) 238, 682, 1305
PspFI CCCAGC 1 cut(s) 1197
PspGI CCWGG 3 cut(s) 238, 682, 1305
PspN4I GGNNCC 4 cut(s) 970, 987, 1083, 1311
PspPI GGNCC 5 cut(s) 91, 251, 680, 1200, 1309
PspPPI RGGWCCY 1 cut(s) 1309
PstI CTGCAG 1 cut(s) 1267
PsuI RGATCY 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 645
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 540, 999
SatI GCNGC 5 cut(s) 317, 779, 801, 1009, 1266
Sau3AI GATC 7 cut(s) 85, 403, 441, 457, 766, 1165, 1207
Sau96I GGNCC 5 cut(s) 91, 251, 680, 1200, 1309
SchI GAGTC 2 cut(s) 130, 191
ScrFI CCNGG 3 cut(s) 240, 684, 1307
SduI GDGCHC 1 cut(s) 843
SexAI ACCWGGT 1 cut(s) 1305
SfaNI GCATC 1 cut(s) 787
SfcI CTRYAG 1 cut(s) 1263
SfuI TTCGAA 1 cut(s) 629
SinI GGWCC 4 cut(s) 91, 251, 680, 1309
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 1 cut(s) 778
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 3 cut(s) 238, 682, 1305
StyI CCWWGG 2 cut(s) 945, 977
TaaI ACNGT 2 cut(s) 502, 703
TaqI TCGA 2 cut(s) 402, 629
TaqII GACCGA 2 cut(s) 134, 910
TauI GCSGC 1 cut(s) 781
TfiI GAWTC 3 cut(s) 7, 347, 1066
Tru1I TTAA 2 cut(s) 540, 999
Tru9I TTAA 2 cut(s) 540, 999
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 188, 703
TseI GCWGC 4 cut(s) 316, 800, 1008, 1265
Tsp45I GTSAC 2 cut(s) 188, 703
TspDTI ATGAA 5 cut(s) 69, 231, 468, 564, 703
TspGWI ACGGA 1 cut(s) 1119
TspRI CASTG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 839
VpaK11BI GGWCC 4 cut(s) 91, 251, 680, 1309
XapI RAATTY 7 cut(s) 40, 56, 208, 265, 419, 621, 874
XceI RCATGY 3 cut(s) 740, 1099, 1151
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.