Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004019

Physical Location & Seq

Genomic Coordinates Forward (+)

5260507 .. 5261036

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0060400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCAACAGTACCAGTGGCCTTTAATGCAGCAACCAATGGTGCTCTTTCTCATGTGGACATGGTGGCATCCTGTCTAGTTCTTGCTCCAGAAAAGCTCGAAGTGACTTTTGAACTCACTGCGTTAGTCACTGTGAAGAAAATTAACCGGAAGTTACATGTCAATGACACAATGCTTCATTGGTTCCGCCATCAAAAACACAAAGATCACAAGGGTGTTGTAGTCCTACAGCTTGTTAGTGCTCAAACTGGTCCGAAAGAGAAGAAGCCAAAGCTAAGTGAGGAAGCTGTATTGTATTGGACAAAGAATCCAAAAATGGGTGATGATAAGAACACGTACCAAGTCAAGTTTGTGGTGGACTCAACATTTGGGATGCCAGGAGCAATTAGCTCAGGGATAGCAAGTCCCAAGCTGGTATTATGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 Pkinase_Tyr

Protein Analysis

142

Amino Acids

15.67

Weight (kDa)

9.37

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35050 AT2G35050
fragaria_vesca	FvH4_3g12590 FvH4_3g12590 FvH4_3g12590
malus_domestica	MD05G1249500.v1.1 MD10G1168200.v1.1 MD10G1229900.v1.1
prunus_persica	Prupe.4G114600_v2.0.a1 Prupe.4G114600_v2.0.a1
pyrus_communis	pycom05g22660 pycom05g22670 pycom10g19340 pycom10g19350
rosa_chinensis	RchiOBHm_Chr2g0086691 RchiOBHm_Chr5g0020551
rosa_laevigata	RLG00000032538
rosa_multiflora	Rmu_sc0004626.1_g000009 Rmu_sc0009745.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057740 Rroxscaffold_4G00315010
rosa_rugosa	Rorug01G0468600 Rorug05G0060400 Rorug05G0060500 Rorug05G0060600 Rorug05G0060600
rosa_samantha	Rh2AG020600 Rh2BG020400 Rh5AG151100 Rh5BG150500 Rh5CG162000 Rh5DG149900
rosa_wichuraiana	Rw5G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AfaI	GTAC	2 cut(s)	12, 338
AfiI	CCNNNNNNNGG	1 cut(s)	317
AflIII	ACRYGT	2 cut(s)	157, 333
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	6 cut(s)	97, 232, 274, 287, 390, 412
AluI	AGCT	6 cut(s)	97, 232, 274, 287, 390, 412
Alw21I	GWGCWC	2 cut(s)	46, 244
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	251
Bbv12I	GWGCWC	2 cut(s)	46, 244
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	378
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	77, 363
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	14, 253
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	2 cut(s)	68, 378
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	14, 253
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	20
BsiHKAI	GWGCWC	2 cut(s)	46, 244
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	46, 244
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	14, 253
BssMI	GATC	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	10, 133
BstBAI	YACGTR	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	275, 391
BstF5I	GGATG	2 cut(s)	68, 378
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	68, 378
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	21, 117, 129
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	11, 337
CviAII	CATG	3 cut(s)	53, 61, 158
CviJI	RGCY	8 cut(s)	20, 97, 232, 268, 274, 287, 390, 412
CviKI_1	RGCY	8 cut(s)	20, 97, 232, 268, 274, 287, 390, 412
CviQI	GTAC	2 cut(s)	11, 337
DdeI	CTNAG	2 cut(s)	275, 391
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	56, 64, 161
FaiI	YATR	4 cut(s)	54, 62, 159, 421
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	3 cut(s)	52, 60, 157
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	55, 385
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	148
Hin1II	CATG	3 cut(s)	56, 64, 161
HinfI	GANTC	2 cut(s)	307, 359
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	58, 358
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	58, 358
HpyCH4III	ACNGT	2 cut(s)	10, 133
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	275, 391
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	56, 64, 161
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	91, 380
LpnPI	CCDG	9 cut(s)	27, 85, 102, 161, 234, 363, 378, 390, 398
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	77, 363
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	3 cut(s)	103, 127, 153
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	148, 274
MhlI	GDGCHC	2 cut(s)	46, 244
MluCI	AATT	2 cut(s)	141, 384
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	1 cut(s)	274
MseI	TTAA	2 cut(s)	24, 144
MslI	CAYNNNNRTG	2 cut(s)	162, 213
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	56, 64, 161
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	2 cut(s)	103, 127
NspI	RCATGY	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	213
PciI	ACATGT	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	336
PscI	ACATGT	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	251
RsaI	GTAC	2 cut(s)	12, 338
RsaNI	GTAC	2 cut(s)	11, 337
RseI	CAYNNNNRTG	2 cut(s)	162, 213
SaqAI	TTAA	2 cut(s)	24, 144
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	2 cut(s)	46, 244
SetI	ASST	7 cut(s)	99, 234, 276, 289, 338, 392, 414
SfaNI	GCATC	2 cut(s)	77, 363
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	2 cut(s)	162, 213
Sse9I	AATT	2 cut(s)	141, 384
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	10, 133
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	141, 384
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	24, 144
Tru9I	TTAA	2 cut(s)	24, 144
TscAI	CASTG	3 cut(s)	21, 124, 136
TseFI	GTSAC	2 cut(s)	103, 127
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	103, 127
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	21, 124, 136
VpaK11BI	GGWCC	1 cut(s)	251
XceI	RCATGY	1 cut(s)	161
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.