Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004019

Physical Location & Seq

Genomic Coordinates Reverse (-)

1425068 .. 1430279

Gene Structure 5212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG020400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTCAAGACTCAACTAAAGAAGCTGGAATGCACTCTAAGAATTCTCCAGCCACATATTGTTGAGCAGTTAAGAATTATTAAGAATAGTGACCTTGAAGAGCTCAGAGAATTGGGTTCTGGAACCTTTGGTACCGTCTACCATGGAAAGTGGAGGGGCACTGATGTTGCAATCAAACGAATCAATGATAGGTGTTTTGCTGGGAAGCCTTTAGAACAGGAGCGGATGAGAAATGATTTCTGGAATGAGGCCATCAACCTCACTGACTTGCACCACCCAAATGTGGTAGCTTTTTATGGCGTTGTACTTGATGGCCAGGGAGGTTCTGTGGCAACCGTATCAGAGTTTATGGTTAATGGTTCTCTTAGAAATGCCTTGCAGAAGAATGAGAAGAGTCTGGACAAGCGCAAACGTCTTTTGATTGCAATGGATGTGGCATTTGGAATGGAGTACCTGCATGGAAAGAATATAGTGCACTTTGATTTGAAAAGTGACAACTTACTTGTCAATCTTCGAGATCCACACCGCCCAATTTGCAAGACAAGAAAATCGACTAGGAAGTTCCGAAATTTGGTACTTGTGGGACGTGGATACACTTCTGTGGCCACGGACAAGAGTACAGAAGTGCTTGATGAGATGAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PB1 Pkinase_Tyr

Protein Analysis

215

Amino Acids

24.65

Weight (kDa)

9.44

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 172	1.8e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	34 - 170	7.1e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35050 AT2G35050
fragaria_vesca	FvH4_3g12590 FvH4_3g12590 FvH4_3g12590
malus_domestica	MD05G1249500.v1.1 MD10G1168200.v1.1 MD10G1229900.v1.1
prunus_persica	Prupe.4G114600_v2.0.a1 Prupe.4G114600_v2.0.a1
pyrus_communis	pycom05g22660 pycom05g22670 pycom10g19340 pycom10g19350
rosa_chinensis	RchiOBHm_Chr2g0086691 RchiOBHm_Chr5g0020551
rosa_laevigata	RLG00000032538
rosa_multiflora	Rmu_sc0004626.1_g000009 Rmu_sc0009745.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057740 Rroxscaffold_4G00315010
rosa_rugosa	Rorug01G0468600 Rorug05G0060400 Rorug05G0060500 Rorug05G0060600 Rorug05G0060600
rosa_samantha	Rh2AG020600 Rh2BG020400 Rh5AG151100 Rh5BG150500 Rh5CG162000 Rh5DG149900
rosa_wichuraiana	Rw5G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	462
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	2 cut(s)	223, 526
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	2 cut(s)	313, 603
AcsI	RAATTY	2 cut(s)	42, 568
AfaI	GTAC	5 cut(s)	133, 306, 452, 576, 619
AfiI	CCNNNNNNNGG	2 cut(s)	283, 571
AgsI	TTSAA	3 cut(s)	7, 98, 487
AjiI	CACGTC	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	315
AleI	CACNNNNGTG	1 cut(s)	599
AluBI	AGCT	3 cut(s)	25, 103, 290
AluI	AGCT	3 cut(s)	25, 103, 290
Alw21I	GWGCWC	2 cut(s)	105, 477
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	3 cut(s)	249, 313, 603
ApaLI	GTGCAC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	42, 568
Asp718I	GGTACC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	408
BaeGI	GKGCMC	2 cut(s)	161, 477
BalI	TGGCCA	2 cut(s)	315, 605
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	105, 477
BccI	CCATC	2 cut(s)	260, 305
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	584
BfaI	CTAG	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	462
BfuI	GTATCC	1 cut(s)	584
Bme1390I	CCNGG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	587
BmiI	GGNNCC	2 cut(s)	124, 133
BmrFI	CCNGG	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	142, 316, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 571
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	142, 316, 606
BseGI	GGATG	2 cut(s)	231, 436
BseLI	CCNNNNNNNGG	2 cut(s)	283, 571
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	118
BseSI	GKGCMC	2 cut(s)	161, 477
BseYI	CCCAGC	1 cut(s)	200
BshFI	GGCC	3 cut(s)	251, 315, 605
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	2 cut(s)	105, 477
BslFI	GGGAC	1 cut(s)	597
BslI	CCNNNNNNNGG	2 cut(s)	283, 571
BsmFI	GGGAC	1 cut(s)	597
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	251, 315, 605
Bsp1286I	GDGCHC	3 cut(s)	105, 161, 477
Bsp143I	GATC	1 cut(s)	517
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	2 cut(s)	223, 526
BspANI	GGCC	3 cut(s)	251, 315, 605
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	124, 133
BspMI	ACCTGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	432
BssECI	CCNNGG	3 cut(s)	142, 316, 606
BssMI	GATC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	136, 337
Bst6I	CTCTTC	2 cut(s)	93, 386
BstDEI	CTNAG	3 cut(s)	38, 104, 365
BstDSI	CCRYGG	2 cut(s)	142, 606
BstF5I	GGATG	2 cut(s)	231, 436
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	1 cut(s)	534
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSLI	GKGCMC	2 cut(s)	161, 477
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	251, 315, 605
BtgI	CCRYGG	2 cut(s)	142, 606
BtrI	CACGTC	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	231, 436
BtsIMutI	CAGTG	2 cut(s)	159, 261
BveI	ACCTGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	408
Csp6I	GTAC	5 cut(s)	132, 305, 451, 575, 618
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviAII	CATG	2 cut(s)	143, 458
CviJI	RGCY	8 cut(s)	25, 52, 103, 208, 251, 290, 315, 605
CviKI_1	RGCY	8 cut(s)	25, 52, 103, 208, 251, 290, 315, 605
CviQI	GTAC	5 cut(s)	132, 305, 451, 575, 618
DdeI	CTNAG	3 cut(s)	38, 104, 365
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
EaeI	YGGCCR	2 cut(s)	313, 603
Eam1104I	CTCTTC	2 cut(s)	93, 386
EarI	CTCTTC	2 cut(s)	93, 386
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	146, 461
FaiI	YATR	6 cut(s)	57, 144, 297, 350, 459, 470
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	2 cut(s)	142, 457
FblI	GTMKAC	1 cut(s)	138
FokI	GGATG	2 cut(s)	238, 443
FriOI	GRGCYC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	1 cut(s)	407
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	251, 315, 605
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	146, 461
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HinfI	GANTC	3 cut(s)	10, 180, 394
Hpy166II	GTNNAC	2 cut(s)	139, 475
Hpy188I	TCNGA	3 cut(s)	107, 343, 566
Hpy188III	TCNNGA	5 cut(s)	7, 120, 241, 398, 515
Hpy8I	GTNNAC	2 cut(s)	139, 475
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	2 cut(s)	136, 337
HpyCH4IV	ACGT	2 cut(s)	412, 586
HpyCH4V	TGCA	8 cut(s)	33, 170, 271, 379, 425, 457, 475, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	534
HpyF3I	CTNAG	3 cut(s)	38, 104, 365
HpySE526I	ACGT	2 cut(s)	412, 586
Hsp92II	CATG	2 cut(s)	146, 461
HspAI	GCGC	1 cut(s)	406
KpnI	GGTACC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	517
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	2 cut(s)	412, 586
MaeIII	GTNAC	2 cut(s)	89, 491
MalI	GATC	1 cut(s)	519
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	1 cut(s)	517
MboII	GAAGA	4 cut(s)	110, 394, 403, 503
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	3 cut(s)	105, 161, 477
MlsI	TGGCCA	2 cut(s)	315, 605
MluCI	AATT	5 cut(s)	42, 75, 110, 531, 568
MluNI	TGGCCA	2 cut(s)	315, 605
MlyI	GAGTC	2 cut(s)	4, 403
MnlI	CCTC	4 cut(s)	147, 241, 269, 314
Mox20I	TGGCCA	2 cut(s)	315, 605
MscI	TGGCCA	2 cut(s)	315, 605
MseI	TTAA	3 cut(s)	71, 81, 354
MslI	CAYNNNNRTG	2 cut(s)	279, 599
Msp20I	TGGCCA	2 cut(s)	315, 605
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	534
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	2 cut(s)	146, 461
NlaIV	GGNNCC	2 cut(s)	124, 133
NmuCI	GTSAC	2 cut(s)	89, 491
OliI	CACNNNNGTG	1 cut(s)	599
PciSI	GCTCTTC	1 cut(s)	93
PctI	GAATGC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	180
PleI	GAGTC	2 cut(s)	4, 402
PpsI	GAGTC	2 cut(s)	4, 402
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	124, 133
PsrI	GAACNNNNNNTAC	2 cut(s)	115, 147
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	5 cut(s)	133, 306, 452, 576, 619
RsaNI	GTAC	5 cut(s)	132, 305, 451, 575, 618
RseI	CAYNNNNRTG	2 cut(s)	279, 599
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	71, 81, 354
Sau3AI	GATC	1 cut(s)	517
SchI	GAGTC	2 cut(s)	4, 403
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	3 cut(s)	105, 161, 477
SmiMI	CAYNNNNRTG	2 cut(s)	279, 599
Sse9I	AATT	5 cut(s)	42, 75, 110, 531, 568
SsiI	CCGC	2 cut(s)	223, 526
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	136, 337
TaiI	ACGT	2 cut(s)	415, 589
TaqI	TCGA	2 cut(s)	514, 551
TasI	AATT	5 cut(s)	42, 75, 110, 531, 568
TatI	WGTACW	2 cut(s)	304, 617
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	3 cut(s)	71, 81, 354
Tru9I	TTAA	3 cut(s)	71, 81, 354
TscAI	CASTG	2 cut(s)	166, 268
TseFI	GTSAC	2 cut(s)	89, 491
Tsp45I	GTSAC	2 cut(s)	89, 491
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	2 cut(s)	166, 268
VneI	GTGCAC	1 cut(s)	473
XapI	RAATTY	2 cut(s)	42, 568
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.