Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004019

Physical Location & Seq

Genomic Coordinates Reverse (-)

1500870 .. 1509452

Gene Structure 8583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG020600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCAAACCACCCCTCTAATGCAATGCCGCTGGCCATTTTTGATACGTATGTCAAGCGATGGTGCTGCTCAAATGAAATCCATTGCAGACATAGTTTCTGCATACAATTGGAAAAGGGTTGTGGTGATATACGAAGATGATGGTTACGGTGGTGATGTTGGGACACTAGCTCTTTTGTCCGAGGCTCTTCAAGATGTTGGTTCAAAGATTGAGCATCGTTTGGTTCTCCCTCAGGTTTCTTCTGAGTTTAATCCTAATTGGGTTGAACTAGAAGAGCTGTTGAAGCTTCCCACATTTCAATCTCGGGTGTTCATTGTGCTGCAGTCATCTTTACCAACTGTGACTAATCTATTCAGGGTGGCAAAGAAGATGGGACTTGTAGGAAGAGACTCAGCTTGGATAATCACAGAGAGAATTACTAGTCTGCTTGACACTCAAGTCAATCATGATATGGGAGGTATTTTGGGAATCAAGAGCTACTATGCCACTCATACTAGTTCCTATATCAAGTTCAACAAGGCATTCCAAAAAAAGTACCCAGAAAAAGAAGACTCCAGGCCAGGAATTTATGCTCTTCGAGCATATGATCATACTAGAATTGTAATACAGGCCCTAAGAATGAGTAGTAACAGTACTACTAACATTCAGGCCTTTGATGGTTCGTATGATGATCTGGTACATCAAGTCCATAACAAGTCATCATATCCAGATGAGACAGACTATCTCCGTACAGGGCTTTACAGATGGGGAGGTGATGGATATGCCTTTGATAAGAAGGGAAATGGAGACTACATAGAGGACGTCAAGACTCAATATCCAGATAAGCCAAATATGGGGTTTCCAGTATCAGATGGCATTGGTTGGCTAGAATTGGGTTCTGGAACCTTTGGTATCTTCTACCATGGAAAGTGGAGGGGCATTGATGCTGCAATCAAACGAATCAATGATAGGTGTTTTGCTAGGAAGCCTTCAGAACAGGAGCGGATGAGAAATGATTTCTGGAATGAGGCCATCAACCTCGCTGACTTGCACCACCCAAATGTGGTAGCTTTTTATGGCGTTGTACTTGATGGCCCGGGAGGTTCTGTGGCAACCGTGACAGAGTTTATGGTTAATGGTTCTCTTAGAAATGCCTTGCAGAAGAATGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

384

Amino Acids

43.34

Weight (kDa)

6.52

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	10 - 212	2e-24	Receptor family ligand binding region
Peripla_BP_6	PF13458	12 - 209	2.6e-08	Periplasmic binding protein
PK_Tyr_Ser-Thr	PF07714	290 - 383	1.1e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	290 - 382	7.5e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35050 AT2G35050
fragaria_vesca	FvH4_3g12590 FvH4_3g12590 FvH4_3g12590
malus_domestica	MD05G1249500.v1.1 MD10G1168200.v1.1 MD10G1229900.v1.1
prunus_persica	Prupe.4G114600_v2.0.a1 Prupe.4G114600_v2.0.a1
pyrus_communis	pycom05g22660 pycom05g22670 pycom10g19340 pycom10g19350
rosa_chinensis	RchiOBHm_Chr2g0086691 RchiOBHm_Chr5g0020551
rosa_laevigata	RLG00000032538
rosa_multiflora	Rmu_sc0004626.1_g000009 Rmu_sc0009745.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057740 Rroxscaffold_4G00315010
rosa_rugosa	Rorug01G0468600 Rorug05G0060400 Rorug05G0060500 Rorug05G0060600 Rorug05G0060600
rosa_samantha	Rh2AG020600 Rh2BG020400 Rh5AG151100 Rh5BG150500 Rh5CG162000 Rh5DG149900
rosa_wichuraiana	Rw5G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AatII	GACGTC	1 cut(s)	804
AccBSI	CCGCTC	1 cut(s)	982
AciI	CCGC	2 cut(s)	28, 982
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	1 cut(s)	954
AcyI	GRCGYC	1 cut(s)	801
AfaI	GTAC	5 cut(s)	536, 634, 678, 730, 1065
AfiI	CCNNNNNNNGG	2 cut(s)	833, 1042
AgsI	TTSAA	6 cut(s)	191, 204, 266, 283, 299, 514
AhlI	ACTAGT	2 cut(s)	419, 494
AjnI	CCWGG	2 cut(s)	554, 559
AluBI	AGCT	6 cut(s)	170, 277, 286, 395, 477, 1049
AluI	AGCT	6 cut(s)	170, 277, 286, 395, 477, 1049
Alw26I	GTCTC	3 cut(s)	381, 707, 780
Ama87I	CYCGRG	2 cut(s)	303, 1075
AoxI	GGCC	6 cut(s)	32, 557, 609, 648, 1008, 1072
ApeKI	GCWGC	3 cut(s)	65, 319, 926
ApoI	RAATTY	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	610, 1073
AsuC2I	CCSGG	2 cut(s)	1076, 1077
AsuHPI	GGTGA	3 cut(s)	136, 164, 764
AvaI	CYCGRG	2 cut(s)	303, 1075
AxyI	CCTNAGG	1 cut(s)	231
BaeI	ACNNNNGTAYC	2 cut(s)	35, 68
BalI	TGGCCA	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	52, 306, 913
BccI	CCATC	9 cut(s)	53, 134, 364, 650, 738, 749, 845, 1019, 1064
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	556, 561
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	2 cut(s)	1076, 1077
BcoDI	GTCTC	3 cut(s)	381, 707, 780
BcuI	ACTAGT	2 cut(s)	419, 494
BfaI	CTAG	7 cut(s)	167, 269, 420, 495, 594, 866, 960
BfmI	CTRYAG	1 cut(s)	320
BisI	GCNGC	4 cut(s)	28, 66, 320, 927
BlsI	GCNGC	4 cut(s)	29, 67, 321, 928
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	4 cut(s)	556, 561, 1076, 1077
BmeT110I	CYCGRG	2 cut(s)	303, 1075
BmgT120I	GGNCC	2 cut(s)	610, 1073
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	4 cut(s)	556, 561, 1076, 1077
BmsI	GCATC	2 cut(s)	223, 913
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	2 cut(s)	1076, 1077
BsaAI	YACGTR	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	801
BsaJI	CCNNGG	3 cut(s)	180, 901, 1075
BsaXI	ACNNNNNCTCC	2 cut(s)	1071, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	833, 1042
Bse1I	ACTGG	1 cut(s)	842
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	29, 81
BseBI	CCWGG	2 cut(s)	556, 561
BseDI	CCNNGG	3 cut(s)	180, 901, 1075
BseGI	GGATG	1 cut(s)	990
BseLI	CCNNNNNNNGG	2 cut(s)	833, 1042
BseMI	GCAATG	2 cut(s)	29, 81
BseMII	CTCAG	3 cut(s)	234, 245, 405
BseNI	ACTGG	1 cut(s)	842
BseXI	GCAGC	3 cut(s)	52, 306, 913
BshFI	GGCC	6 cut(s)	34, 559, 611, 650, 1010, 1074
BsiHKCI	CYCGRG	2 cut(s)	303, 1075
BsiSI	CCGG	1 cut(s)	1076
BslFI	GGGAC	2 cut(s)	175, 387
BslI	CCNNNNNNNGG	2 cut(s)	833, 1042
BsmAI	GTCTC	3 cut(s)	381, 707, 780
BsmFI	GGGAC	2 cut(s)	175, 387
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	6 cut(s)	34, 559, 611, 650, 1010, 1074
BsoBI	CYCGRG	2 cut(s)	303, 1075
Bsp143I	GATC	2 cut(s)	586, 670
Bsp19I	CCATGG	1 cut(s)	901
BspACI	CCGC	2 cut(s)	28, 982
BspANI	GGCC	6 cut(s)	34, 559, 611, 650, 1010, 1074
BspCNI	CTCAG	3 cut(s)	235, 244, 404
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	883
BspMAI	CTGCAG	1 cut(s)	324
BspQI	GCTCTTC	3 cut(s)	192, 267, 579
BsrBI	CCGCTC	1 cut(s)	982
BsrDI	GCAATG	2 cut(s)	29, 81
BsrI	ACTGG	1 cut(s)	842
BssECI	CCNNGG	3 cut(s)	180, 901, 1075
BssMI	GATC	2 cut(s)	586, 670
BssNI	GRCGYC	1 cut(s)	801
BssT1I	CCWWGG	1 cut(s)	901
Bst2UI	CCWGG	2 cut(s)	556, 561
Bst4CI	ACNGT	4 cut(s)	149, 340, 632, 1096
Bst6I	CTCTTC	4 cut(s)	192, 267, 379, 579
BstACI	GRCGYC	1 cut(s)	801
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	5 cut(s)	231, 243, 391, 614, 1124
BstDSI	CCRYGG	1 cut(s)	901
BstF5I	GGATG	1 cut(s)	990
BstKTI	GATC	2 cut(s)	589, 673
BstMAI	GTCTC	3 cut(s)	381, 707, 780
BstMBI	GATC	2 cut(s)	586, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 578
BstNI	CCWGG	2 cut(s)	556, 561
BstSCI	CCNGG	4 cut(s)	554, 559, 1074, 1075
BstSFI	CTRYAG	1 cut(s)	320
BstSNI	TACGTA	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	52, 306, 913
BstV2I	GAAGAC	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	6 cut(s)	34, 559, 611, 650, 1010, 1074
BtgI	CCRYGG	1 cut(s)	901
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	990
Cac8I	GCNNGC	1 cut(s)	32
CciI	TCATGA	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	610, 1073
Cfr9I	CCCGGG	1 cut(s)	1075
Csp6I	GTAC	5 cut(s)	535, 633, 677, 729, 1064
CviAII	CATG	2 cut(s)	446, 902
CviQI	GTAC	5 cut(s)	535, 633, 677, 729, 1064
DdeI	CTNAG	5 cut(s)	231, 243, 391, 614, 1124
DpnI	GATC	2 cut(s)	588, 672
DpnII	GATC	2 cut(s)	586, 670
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	4 cut(s)	192, 267, 379, 579
EarI	CTCTTC	4 cut(s)	192, 267, 379, 579
Eco105I	TACGTA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	901
Eco147I	AGGCCT	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	954
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	2 cut(s)	303, 1075
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	554, 559
EcoT14I	CCWWGG	1 cut(s)	901
ErhI	CCWWGG	1 cut(s)	901
FaeI	CATG	2 cut(s)	449, 905
FaqI	GGGAC	2 cut(s)	175, 387
FatI	CATG	2 cut(s)	445, 901
FauNDI	CATATG	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	4 cut(s)	28, 66, 320, 927
FokI	GGATG	1 cut(s)	997
Fsp4HI	GCNGC	4 cut(s)	28, 66, 320, 927
FspBI	CTAG	7 cut(s)	167, 269, 420, 495, 594, 866, 960
GluI	GCNGC	4 cut(s)	28, 66, 320, 927
GsuI	CTGGAG	1 cut(s)	538
HaeIII	GGCC	6 cut(s)	34, 559, 611, 650, 1010, 1074
HapII	CCGG	1 cut(s)	1076
Hin1I	GRCGYC	1 cut(s)	801
Hin1II	CATG	2 cut(s)	449, 905
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	5 cut(s)	389, 468, 551, 808, 939
HpaII	CCGG	1 cut(s)	1076
HphI	GGTGA	3 cut(s)	136, 164, 764
Hpy188I	TCNGA	4 cut(s)	181, 244, 850, 973
Hpy188III	TCNNGA	8 cut(s)	191, 446, 472, 707, 805, 818, 879, 1000
HpyAV	CCTTC	2 cut(s)	769, 978
HpyCH4III	ACNGT	4 cut(s)	149, 340, 632, 1096
HpyCH4IV	ACGT	2 cut(s)	46, 801
HpyCH4V	TGCA	8 cut(s)	4, 22, 86, 101, 322, 929, 1030, 1138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 578
HpyF3I	CTNAG	5 cut(s)	231, 243, 391, 614, 1124
HpySE526I	ACGT	2 cut(s)	46, 801
Hsp92I	GRCGYC	1 cut(s)	801
Hsp92II	CATG	2 cut(s)	449, 905
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	586, 670
LguI	GCTCTTC	3 cut(s)	192, 267, 579
LmnI	GCTCC	1 cut(s)	979
Lsp1109I	GCAGC	3 cut(s)	52, 306, 913
LweI	GCATC	2 cut(s)	223, 913
MaeI	CTAG	7 cut(s)	167, 269, 420, 495, 594, 866, 960
MaeII	ACGT	2 cut(s)	46, 801
MaeIII	GTNAC	4 cut(s)	143, 340, 626, 1096
MalI	GATC	2 cut(s)	588, 672
MbiI	CCGCTC	1 cut(s)	982
MboI	GATC	2 cut(s)	586, 670
MfeI	CAATTG	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	6 cut(s)	106, 256, 414, 564, 597, 869
MluNI	TGGCCA	1 cut(s)	34
MlyI	GAGTC	3 cut(s)	383, 545, 802
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	2 cut(s)	249, 1113
MslI	CAYNNNNRTG	1 cut(s)	1038
Msp20I	TGGCCA	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	1 cut(s)	1076
MspR9I	CCNGG	4 cut(s)	556, 561, 1076, 1077
MunI	CAATTG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	2 cut(s)	556, 561
MwoI	GCNNNNNNNGC	2 cut(s)	283, 578
NciI	CCSGG	2 cut(s)	1076, 1077
NcoI	CCATGG	1 cut(s)	901
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	2 cut(s)	586, 670
NlaIII	CATG	2 cut(s)	449, 905
NlaIV	GGNNCC	1 cut(s)	883
NmuCI	GTSAC	2 cut(s)	340, 1096
PagI	TCATGA	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	650
PciSI	GCTCTTC	3 cut(s)	192, 267, 579
PctI	GAATGC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	468, 939
PkrI	GCNGC	4 cut(s)	29, 67, 321, 928
PleI	GAGTC	3 cut(s)	383, 545, 802
PpsI	GAGTC	3 cut(s)	383, 545, 802
Ppu21I	YACGTR	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	554, 559
PspGI	CCWGG	2 cut(s)	554, 559
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	2 cut(s)	610, 1073
PstI	CTGCAG	1 cut(s)	324
RsaI	GTAC	5 cut(s)	536, 634, 678, 730, 1065
RsaNI	GTAC	5 cut(s)	535, 633, 677, 729, 1064
RseI	CAYNNNNRTG	1 cut(s)	1038
SapI	GCTCTTC	3 cut(s)	192, 267, 579
SaqAI	TTAA	2 cut(s)	249, 1113
SatI	GCNGC	4 cut(s)	28, 66, 320, 927
Sau3AI	GATC	2 cut(s)	586, 670
Sau96I	GGNCC	2 cut(s)	610, 1073
ScaI	AGTACT	1 cut(s)	634
SchI	GAGTC	3 cut(s)	383, 545, 802
ScrFI	CCNGG	4 cut(s)	556, 561, 1076, 1077
SfaNI	GCATC	2 cut(s)	223, 913
SfcI	CTRYAG	1 cut(s)	320
SmaI	CCCGGG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	1 cut(s)	1038
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SnaBI	TACGTA	1 cut(s)	47
SpeI	ACTAGT	2 cut(s)	419, 494
Sse9I	AATT	6 cut(s)	106, 256, 414, 564, 597, 869
SseBI	AGGCCT	1 cut(s)	650
SsiI	CCGC	2 cut(s)	28, 982
SspMI	CTAG	7 cut(s)	167, 269, 420, 495, 594, 866, 960
StuI	AGGCCT	1 cut(s)	650
StyD4I	CCNGG	4 cut(s)	554, 559, 1074, 1075
StyI	CCWWGG	1 cut(s)	901
TaaI	ACNGT	4 cut(s)	149, 340, 632, 1096
TaiI	ACGT	2 cut(s)	49, 804
TaqI	TCGA	1 cut(s)	577
TasI	AATT	6 cut(s)	106, 256, 414, 564, 597, 869
TatI	WGTACW	2 cut(s)	632, 1063
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	468, 939
Tru1I	TTAA	2 cut(s)	249, 1113
Tru9I	TTAA	2 cut(s)	249, 1113
TseFI	GTSAC	2 cut(s)	340, 1096
TseI	GCWGC	3 cut(s)	65, 319, 926
Tsp45I	GTSAC	2 cut(s)	340, 1096
TspDTI	ATGAA	2 cut(s)	89, 301
TspGWI	ACGGA	1 cut(s)	716
TspMI	CCCGGG	1 cut(s)	1075
XapI	RAATTY	1 cut(s)	564
XmaI	CCCGGG	1 cut(s)	1075
XspI	CTAG	7 cut(s)	167, 269, 420, 495, 594, 866, 960
ZraI	GACGTC	1 cut(s)	802
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.