Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004019

Physical Location & Seq

Genomic Coordinates Forward (+)

39214639 .. 39219021

Gene Structure 4383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGGGACTGCGCTCTCATTAATGGGTCTCCAAATCAAGTTGGTGGCCTAACACAAGATGGAGGCCCAAATCAGCTTGGGTGCCCAAGCTGGTTTTGGACGTTGTTTTCTGTTGCTGCCATGTGGGCTATTGTGGGGCCCACACACTTTGGGTTTCACATTTGGGATCCAGATCTTACAACCGAGGCTAGGGTTTGCGTCCCCTCCTCCGGCATATCTAGCGTAGTTGATAGGGTTCTCTATGGCCGATTTGTAGGCCATTCCACTTTGGGAGCCGACAATGGTGGTGCCACCCCCGACAATGGAGCACAAAGAAAGTGCAATATCAACTTGAGTCCCGAATGTCCGACGGGCGGCCCAAACCGATATGACTCGGGTAGGAAAAAGGTCCAAGTTGACATTGGAAGAAATTCCATTGCCCACATGGTAGATGCACTTTGCCACCCAAATATTGTTGCATTTTATGGTATAGCGACGGATAAATTGGCACTAGTGACGAAGTATATGGTGAACGACTCATTGAAACAAAGTAGAGTAATTGGAGGGCCCGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PB1 Pkinase_Tyr

Protein Analysis

185

Amino Acids

19.69

Weight (kDa)

7.64

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35050 AT2G35050
fragaria_vesca	FvH4_3g12590 FvH4_3g12590 FvH4_3g12590
malus_domestica	MD05G1249500.v1.1 MD10G1168200.v1.1 MD10G1229900.v1.1
prunus_persica	Prupe.4G114600_v2.0.a1 Prupe.4G114600_v2.0.a1
pyrus_communis	pycom05g22660 pycom05g22670 pycom10g19340 pycom10g19350
rosa_chinensis	RchiOBHm_Chr2g0086691 RchiOBHm_Chr5g0020551
rosa_laevigata	RLG00000032538
rosa_multiflora	Rmu_sc0004626.1_g000009 Rmu_sc0009745.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057740 Rroxscaffold_4G00315010
rosa_rugosa	Rorug01G0468600 Rorug05G0060400 Rorug05G0060500 Rorug05G0060600 Rorug05G0060600
rosa_samantha	Rh2AG020600 Rh2BG020400 Rh5AG151100 Rh5BG150500 Rh5CG162000 Rh5DG149900
rosa_wichuraiana	Rw5G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	81, 287
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	409
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	4 cut(s)	189, 209, 302, 353
AgsI	TTSAA	1 cut(s)	523
AhlI	ACTAGT	1 cut(s)	490
AluBI	AGCT	2 cut(s)	76, 90
AluI	AGCT	2 cut(s)	76, 90
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	161, 174
Ama87I	CYCGRG	1 cut(s)	373
AoxI	GGCC	7 cut(s)	46, 64, 137, 244, 256, 355, 545
ApaI	GGGCCC	2 cut(s)	141, 549
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	409
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	7 cut(s)	65, 137, 138, 356, 388, 545, 546
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	3 cut(s)	86, 141, 549
BamHI	GGATCC	1 cut(s)	166
BanI	GGYRCC	2 cut(s)	81, 287
BanII	GRGCYC	2 cut(s)	141, 549
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	3 cut(s)	189, 219, 491
BglI	GCCNNNNNGGC	1 cut(s)	125
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	2 cut(s)	117, 355
BlsI	GCNGC	2 cut(s)	118, 356
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	7 cut(s)	65, 137, 138, 356, 388, 545, 546
BmiI	GGNNCC	7 cut(s)	83, 138, 139, 168, 274, 289, 547
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	549
BsaBI	GATNNNNATC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	4 cut(s)	189, 209, 302, 353
Bse3DI	GCAATG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	4 cut(s)	189, 209, 302, 353
BseMI	GCAATG	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	196
BseSI	GKGCMC	3 cut(s)	86, 141, 549
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	7 cut(s)	48, 66, 139, 246, 258, 357, 547
BshNI	GGYRCC	2 cut(s)	81, 287
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	210, 549
BslFI	GGGAC	3 cut(s)	20, 185, 321
BslI	CCNNNNNNNGG	4 cut(s)	189, 209, 302, 353
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	3 cut(s)	20, 185, 321
BsnI	GGCC	7 cut(s)	48, 66, 139, 246, 258, 357, 547
Bso31I	GGTCTC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	373
Bsp120I	GGGCCC	2 cut(s)	137, 545
Bsp1286I	GDGCHC	4 cut(s)	86, 141, 310, 549
Bsp143I	GATC	2 cut(s)	166, 172
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	7 cut(s)	48, 66, 139, 246, 258, 357, 547
BspLI	GGNNCC	7 cut(s)	83, 138, 139, 168, 274, 289, 547
BspPI	GGATC	2 cut(s)	161, 174
BspT107I	GGYRCC	2 cut(s)	81, 287
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	166, 172
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	2 cut(s)	169, 175
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	166, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 219
BstSCI	CCNGG	1 cut(s)	547
BstSLI	GKGCMC	3 cut(s)	86, 141, 549
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	166, 172
BstYI	RGATCY	2 cut(s)	166, 172
BsuRI	GGCC	7 cut(s)	48, 66, 139, 246, 258, 357, 547
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	7 cut(s)	65, 137, 138, 356, 388, 545, 546
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	552
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	3 cut(s)	121, 424, 555
CviQI	GTAC	1 cut(s)	552
DpnI	GATC	2 cut(s)	168, 174
DpnII	GATC	2 cut(s)	166, 172
EaeI	YGGCCR	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	141, 549
Eco31I	GGTCTC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	373
EcoO109I	RGGNCCY	2 cut(s)	137, 545
EcoT38I	GRGCYC	2 cut(s)	141, 549
FaeI	CATG	3 cut(s)	124, 427, 558
FaqI	GGGAC	3 cut(s)	20, 185, 321
FatI	CATG	3 cut(s)	120, 423, 554
Fnu4HI	GCNGC	2 cut(s)	117, 355
FriOI	GRGCYC	2 cut(s)	141, 549
Fsp4HI	GCNGC	2 cut(s)	117, 355
FspBI	CTAG	3 cut(s)	189, 219, 491
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	117, 355
HaeIII	GGCC	7 cut(s)	48, 66, 139, 246, 258, 357, 547
HapII	CCGG	2 cut(s)	210, 549
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	124, 427, 558
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	334, 371, 515
HpaII	CCGG	2 cut(s)	210, 549
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	397, 511
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	170, 338
Hpy8I	GTNNAC	2 cut(s)	397, 511
Hpy99I	CGWCG	2 cut(s)	352, 478
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	321, 434, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 219
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	3 cut(s)	124, 427, 558
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	166, 172
LmnI	GCTCC	2 cut(s)	272, 305
LpnPI	CCDG	3 cut(s)	76, 183, 223
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	3 cut(s)	189, 219, 491
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	2 cut(s)	168, 174
MboI	GATC	2 cut(s)	166, 172
MboII	GAAGA	1 cut(s)	417
MflI	RGATCY	2 cut(s)	166, 172
MhlI	GDGCHC	4 cut(s)	86, 141, 310, 549
MluCI	AATT	3 cut(s)	409, 482, 537
MlyI	GAGTC	3 cut(s)	343, 365, 509
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	5 cut(s)	56, 178, 214, 217, 536
MroXI	GAANNNNTTC	1 cut(s)	409
MseI	TTAA	1 cut(s)	21
MspI	CCGG	2 cut(s)	210, 549
MspR9I	CCNGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	2 cut(s)	125, 219
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	2 cut(s)	166, 172
NlaIII	CATG	3 cut(s)	124, 427, 558
NlaIV	GGNNCC	7 cut(s)	83, 138, 139, 168, 274, 289, 547
NmuCI	GTSAC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	118, 356
PleI	GAGTC	3 cut(s)	342, 365, 509
PpsI	GAGTC	3 cut(s)	342, 365, 509
PshBI	ATTAAT	1 cut(s)	21
PspN4I	GGNNCC	7 cut(s)	83, 138, 139, 168, 274, 289, 547
PspOMI	GGGCCC	2 cut(s)	137, 545
PspPI	GGNCC	7 cut(s)	65, 137, 138, 356, 388, 545, 546
PsuI	RGATCY	2 cut(s)	166, 172
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	2 cut(s)	117, 355
Sau3AI	GATC	2 cut(s)	166, 172
Sau96I	GGNCC	7 cut(s)	65, 137, 138, 356, 388, 545, 546
SchI	GAGTC	3 cut(s)	343, 365, 509
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	4 cut(s)	86, 141, 310, 549
SetI	ASST	4 cut(s)	78, 92, 104, 390
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	3 cut(s)	409, 482, 537
SsiI	CCGC	1 cut(s)	354
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	3 cut(s)	189, 219, 491
StyD4I	CCNGG	1 cut(s)	547
TaiI	ACGT	1 cut(s)	104
TasI	AATT	3 cut(s)	409, 482, 537
TauI	GCSGC	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	493
TspGWI	ACGGA	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	388
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	3 cut(s)	93, 398, 421
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	3 cut(s)	189, 219, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.