Rmu_sc0004626.1_g000009

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004626.1
OG0004019
Physical Location & Seq
Forward (+)
32364 .. 34050
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004626.1_g000009.1.cds

Sequence Viewer

Length: 672 bp
atgggagcgtttgccttctccgttgagtccgcctggaggaacgtctccggctgtcgcttcgtccggcttcaattcggagcttgcttagacccacgggtcaaatctgtccagcccgtgcaactagcctacgccgtccaattcatcaaatctgtccaacccgtgtatcctgcctctaccgtccagaccgcttcctcctccctcttaacctcctctttgtctaagatgttcaagactcaactgaagaagttggaatgcactctaagaattctccagccacatattgttgagcagctaagagacgtcaagactcaatatccagataagccaaatatggggtttccagtatcagatggcattggttggcttgaccttgaagagcttagagaattgggttctggaacctttggtatcttctaccatggaaagtggaggggcattgatgctgcaatcaaacgaatcaatgataggtgttttgctaggaagccttcagaacatgagcggatgagaaatgatttctggaatgaggccatcaacatcgctgacttgcaccacccaaatgtggtagctttttatggcgttgtacttgatggcccgggaggttctgtggcaaccgtgacagagtttatggttaatggttctcttagaaatgccttgcagaagaatgagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

223

Amino Acids

24.99

Weight (kDa)

9.21

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AatII GACGTC 1 cut(s) 303
AccBSI CCGCTC 1 cut(s) 499
AciI CCGC 3 cut(s) 30, 186, 499
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 2 cut(s) 260, 471
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 1 cut(s) 582
AfiI CCNNNNNNNGG 3 cut(s) 36, 332, 559
AgsI TTSAA 3 cut(s) 71, 229, 374
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 4 cut(s) 80, 292, 379, 566
AluI AGCT 4 cut(s) 80, 292, 379, 566
Alw26I GTCTC 2 cut(s) 49, 291
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 2 cut(s) 525, 589
ApeKI GCWGC 2 cut(s) 289, 443
ApoI RAATTY 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 590
AsuC2I CCSGG 2 cut(s) 593, 594
AvaI CYCGRG 1 cut(s) 592
BaeI ACNNNNGTAYC 2 cut(s) 146, 179
BbvI GCAGC 2 cut(s) 301, 430
BccI CCATC 3 cut(s) 344, 536, 581
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 34
BciVI GTATCC 1 cut(s) 174
BcnI CCSGG 2 cut(s) 593, 594
BcoDI GTCTC 2 cut(s) 49, 291
BfaI CTAG 2 cut(s) 122, 477
BfuI GTATCC 1 cut(s) 174
BisI GCNGC 2 cut(s) 290, 444
BlsI GCNGC 2 cut(s) 291, 445
Bme1390I CCNGG 3 cut(s) 34, 593, 594
BmeT110I CYCGRG 1 cut(s) 592
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 3 cut(s) 34, 593, 594
BmsI GCATC 1 cut(s) 430
BpmI CTGGAG 2 cut(s) 55, 254
BpuMI CCSGG 2 cut(s) 593, 594
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 92, 418, 592
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 332, 559
Bse1I ACTGG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 3 cut(s) 92, 418, 592
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 3 cut(s) 36, 332, 559
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 184, 199
BseXI GCAGC 2 cut(s) 301, 430
BshFI GGCC 2 cut(s) 527, 591
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 3 cut(s) 48, 64, 593
BslI CCNNNNNNNGG 3 cut(s) 36, 332, 559
BsmAI GTCTC 2 cut(s) 49, 291
BsmBI CGTCTC 2 cut(s) 49, 291
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 2 cut(s) 527, 591
BsoBI CYCGRG 1 cut(s) 592
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 3 cut(s) 30, 186, 499
BspANI GGCC 2 cut(s) 527, 591
BspLI GGNNCC 1 cut(s) 400
BspQI GCTCTTC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 499
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 92, 418, 592
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 178, 613
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 6 cut(s) 85, 219, 260, 293, 380, 641
BstDSI CCRYGG 2 cut(s) 92, 418
BstF5I GGATG 1 cut(s) 507
BstMAI GTCTC 2 cut(s) 49, 291
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 3 cut(s) 32, 591, 592
BstV1I GCAGC 2 cut(s) 301, 430
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 2 cut(s) 527, 591
BtgI CCRYGG 2 cut(s) 92, 418
BtgZI GCGATG 1 cut(s) 520
BtsCI GGATG 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 590
Cfr9I CCCGGG 1 cut(s) 592
Csp6I GTAC 1 cut(s) 581
CviAII CATG 2 cut(s) 419, 494
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 6 cut(s) 85, 219, 260, 293, 380, 641
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 260, 471
Eco88I CYCGRG 1 cut(s) 592
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
Esp3I CGTCTC 2 cut(s) 49, 291
FaeI CATG 2 cut(s) 422, 497
FaiI YATR 6 cut(s) 279, 332, 420, 495, 573, 626
FatI CATG 2 cut(s) 418, 493
Fnu4HI GCNGC 2 cut(s) 290, 444
FokI GGATG 1 cut(s) 514
Fsp4HI GCNGC 2 cut(s) 290, 444
FspBI CTAG 2 cut(s) 122, 477
GluI GCNGC 2 cut(s) 290, 444
GsuI CTGGAG 2 cut(s) 55, 254
HaeIII GGCC 2 cut(s) 527, 591
HapII CCGG 3 cut(s) 48, 64, 593
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 2 cut(s) 422, 497
HinfI GANTC 4 cut(s) 26, 232, 307, 456
HpaII CCGG 3 cut(s) 48, 64, 593
Hpy188I TCNGA 3 cut(s) 77, 349, 490
Hpy188III TCNNGA 6 cut(s) 181, 229, 304, 317, 396, 517
HpyAV CCTTC 2 cut(s) 25, 495
HpyCH4III ACNGT 2 cut(s) 178, 613
HpyCH4IV ACGT 2 cut(s) 42, 300
HpyCH4V TGCA 5 cut(s) 118, 255, 446, 547, 655
HpyF3I CTNAG 6 cut(s) 85, 219, 260, 293, 380, 641
HpySE526I ACGT 2 cut(s) 42, 300
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 422, 497
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 5, 77
Lsp1109I GCAGC 2 cut(s) 301, 430
LweI GCATC 1 cut(s) 430
MaeI CTAG 2 cut(s) 122, 477
MaeII ACGT 2 cut(s) 42, 300
MaeIII GTNAC 1 cut(s) 613
MbiI CCGCTC 1 cut(s) 499
MboII GAAGA 4 cut(s) 253, 386, 403, 670
MluCI AATT 4 cut(s) 71, 137, 264, 386
MlyI GAGTC 3 cut(s) 35, 226, 301
MmeI TCCRAC 2 cut(s) 178, 228
MseI TTAA 2 cut(s) 203, 630
MslI CAYNNNNRTG 1 cut(s) 555
MspI CCGG 3 cut(s) 48, 64, 593
MspR9I CCNGG 3 cut(s) 34, 593, 594
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 1 cut(s) 34
NciI CCSGG 2 cut(s) 593, 594
NcoI CCATGG 1 cut(s) 418
NlaIII CATG 2 cut(s) 422, 497
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 456
PkrI GCNGC 2 cut(s) 291, 445
PleI GAGTC 3 cut(s) 34, 226, 301
PpsI GAGTC 3 cut(s) 34, 226, 301
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 590
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 1 cut(s) 555
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 203, 630
SatI GCNGC 2 cut(s) 290, 444
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 3 cut(s) 35, 226, 301
ScrFI CCNGG 3 cut(s) 34, 593, 594
SfaNI GCATC 1 cut(s) 430
SmaI CCCGGG 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 555
Sse9I AATT 4 cut(s) 71, 137, 264, 386
SsiI CCGC 3 cut(s) 30, 186, 499
SspMI CTAG 2 cut(s) 122, 477
StyD4I CCNGG 3 cut(s) 32, 591, 592
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 178, 613
TaiI ACGT 2 cut(s) 45, 303
TasI AATT 4 cut(s) 71, 137, 264, 386
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 2 cut(s) 203, 630
Tru9I TTAA 2 cut(s) 203, 630
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 2 cut(s) 289, 443
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 1 cut(s) 130
TspGWI ACGGA 1 cut(s) 10
TspMI CCCGGG 1 cut(s) 592
XapI RAATTY 1 cut(s) 264
XmaI CCCGGG 1 cut(s) 592
XspI CTAG 2 cut(s) 122, 477
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.