Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004019

Physical Location & Seq

Genomic Coordinates Forward (+)

5265677 .. 5268095

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0060500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGAGAGCTGCGAAAGATGATGCTTCTCGAATCTGTTCTTCTTCTGCTTCCGCTTCTTCTATGCCTCCACTTCCGTCTCGCCGTCTCCGAAATCTTCTTCGAAGAGCGATTTGAAGATGGGTGGAAGAGCCGGTGGGTGTTGTCGGACTGGAAAAGGGCCGAAGGAAAAGCAGGAACGTTTAAGTACACTGCAGGGAAATGGTCTGGAGATCCTGATGATAAAGGTACTCAAAACAACATTGAAGAGCAGAAGGATGAAGACCTGGAGCTACCATTGTTCGACTTGTCAACAATAGAGACTGCTACCAATAAATTTTCAATTAATAATAAACTTGGAGAAGGTGGTTTTGAATCTGTGTACGAGGGTACACTACTAGATGGAAAAGAAATTGCAGTGAAGCGGCTCTCAAGAAGTTCTGGACAAGGAATGAAAGAGTTCAAAAATGAAGTGATACTGATTGCAAAACTTCAGCACCGCAATCTTGTAAAGCTTCTTCACAAGTTTCATTTGCTCTTACTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 Pkinase_Tyr

Protein Analysis

175

Amino Acids

20.16

Weight (kDa)

6.45

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	107 - 167	1.5e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	107 - 169	5.1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35050 AT2G35050
fragaria_vesca	FvH4_3g12590 FvH4_3g12590 FvH4_3g12590
malus_domestica	MD05G1249500.v1.1 MD10G1168200.v1.1 MD10G1229900.v1.1
prunus_persica	Prupe.4G114600_v2.0.a1 Prupe.4G114600_v2.0.a1
pyrus_communis	pycom05g22660 pycom05g22670 pycom10g19340 pycom10g19350
rosa_chinensis	RchiOBHm_Chr2g0086691 RchiOBHm_Chr5g0020551
rosa_laevigata	RLG00000032538
rosa_multiflora	Rmu_sc0004626.1_g000009 Rmu_sc0009745.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057740 Rroxscaffold_4G00315010
rosa_rugosa	Rorug01G0468600 Rorug05G0060400 Rorug05G0060500 Rorug05G0060600 Rorug05G0060600
rosa_samantha	Rh2AG020600 Rh2BG020400 Rh5AG151100 Rh5BG150500 Rh5CG162000 Rh5DG149900
rosa_wichuraiana	Rw5G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	53, 403, 478
AclI	AACGTT	1 cut(s)	179
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	4 cut(s)	188, 229, 362, 370
AgsI	TTSAA	5 cut(s)	116, 245, 321, 353, 442
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	10, 271, 493
AluI	AGCT	3 cut(s)	10, 271, 493
Alw26I	GTCTC	3 cut(s)	83, 91, 293
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	2 cut(s)	36, 437
AspS9I	GGNCC	1 cut(s)	159
AsuII	TTCGAA	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbsI	GAAGAC	1 cut(s)	267
BccI	CCATC	2 cut(s)	113, 374
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	3 cut(s)	83, 91, 293
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	2 cut(s)	11, 404
BlsI	GCNGC	2 cut(s)	12, 405
Bme1390I	CCNGG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	2 cut(s)	228, 287
Bpu14I	TTCGAA	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	83, 91, 293
BsmBI	CGTCTC	2 cut(s)	83, 91
BsnI	GGCC	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	3 cut(s)	53, 403, 478
BspANI	GGCC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	3 cut(s)	99, 122, 240
BspT104I	TTCGAA	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	132
BssMI	GATC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	266
Bst6I	CTCTTC	3 cut(s)	99, 122, 240
BstBI	TTCGAA	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	3 cut(s)	83, 91, 293
BstMBI	GATC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	2 cut(s)	189, 402
BtsIMutI	CAGTG	2 cut(s)	189, 402
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	4 cut(s)	187, 228, 361, 369
CviJI	RGCY	6 cut(s)	10, 132, 161, 271, 406, 493
CviKI_1	RGCY	6 cut(s)	10, 132, 161, 271, 406, 493
CviQI	GTAC	4 cut(s)	187, 228, 361, 369
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	3 cut(s)	99, 122, 240
EarI	CTCTTC	3 cut(s)	99, 122, 240
Eco57I	CTGAAG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	264
Esp3I	CGTCTC	2 cut(s)	83, 91
FaiI	YATR	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	11, 404
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	2 cut(s)	11, 404
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	2 cut(s)	11, 404
GsuI	CTGGAG	2 cut(s)	228, 287
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	32, 353
HpaII	CCGG	1 cut(s)	133
Hpy166II	GTNNAC	4 cut(s)	189, 291, 361, 371
Hpy188I	TCNGA	2 cut(s)	91, 148
Hpy188III	TCNNGA	5 cut(s)	29, 207, 215, 411, 420
Hpy8I	GTNNAC	4 cut(s)	189, 291, 361, 371
HpyAV	CCTTC	3 cut(s)	158, 247, 335
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	3 cut(s)	194, 395, 464
HpySE526I	ACGT	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	211
LguI	GCTCTTC	3 cut(s)	99, 122, 240
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	136, 146, 159, 180, 192, 228, 251, 278, 405
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	179
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	3 cut(s)	314, 321, 390
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	2 cut(s)	77, 358
MroXI	GAANNNNTTC	2 cut(s)	36, 437
MseI	TTAA	3 cut(s)	183, 324, 526
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	102
PciSI	GCTCTTC	3 cut(s)	99, 122, 240
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	36, 437
PfeI	GAWTC	2 cut(s)	32, 353
PkrI	GCNGC	2 cut(s)	12, 405
PshBI	ATTAAT	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	4 cut(s)	188, 229, 362, 370
RsaNI	GTAC	4 cut(s)	187, 228, 361, 369
SapI	GCTCTTC	3 cut(s)	99, 122, 240
SaqAI	TTAA	3 cut(s)	183, 324, 526
SatI	GCNGC	2 cut(s)	11, 404
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	7 cut(s)	12, 182, 229, 267, 273, 346, 495
SfaNI	GCATC	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	3 cut(s)	314, 321, 390
SsiI	CCGC	3 cut(s)	53, 403, 478
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	30, 102, 282
TasI	AATT	3 cut(s)	314, 321, 390
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	32, 353
Tru1I	TTAA	3 cut(s)	183, 324, 526
Tru9I	TTAA	3 cut(s)	183, 324, 526
TscAI	CASTG	2 cut(s)	196, 402
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	273, 446, 462, 497
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	196, 402
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	2 cut(s)	36, 437
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.