Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004430

Physical Location & Seq

Genomic Coordinates Forward (+)

29118871 .. 29122116

Gene Structure 3246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCGAGCTCTCCAAGAGGCTCCCTCACAACCTGGACTCCCAATTTCACTTTCCCTGGGATCAAATTCAACTCTAGGCGAAGGGGCTTCGGGTTCCCGATTCTACAGCTGGCTTGGTGAGTGCCATGGGGCTTTTCACAATGTCGCTCTAATTGTACCCTCGCTTCTTTTCGTCCTGTACTTGGCCTATCAAGCAAGGAAAAGCTTCTCGAAGCTCTCTCATGGCCGGTCTTATATTATGATCGCGTACTATGGGTGCCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTTTACAGGCATGGGAGTGCACTCCTGGAAAAGAACTAGCCTGGAATTTCTTATCTTTGTTCACAACCTCCGGGATGCTATTTTTGGAAGTAAGCTTGCTGGCATTTTTGATCCAAGGGAATTATGCAAGTGGACTGGAAGCTTTGACACGGACTTTCGTTGTCTCAGGGGTCCTTGTTGTTTTGGATATACTTCTCAAGGCAATCTATCTATTTGGATTTGGAATTCCATTATTTGTTGACAACAAAGATCGTACAGATCGGATGAAGTGGGACTTGTGGGTTGTCCACAGGCTAGTGATTACTGCAATTTATGGCTTCATATTGTTTATGTACCATTCCAAGTGGAGAGAAAGGTTACCAGCAAGACCTGCATTCTACAAGTATACCGCTGTCATGTTTATGTTGAACATACTAGCCCTGTTTGCTTGCGGGCTTACTGGAAATGGGGCTGGATTTGGGTTCTGGCTCTATGGTGCCACTGTTGTCTGTTATCATGCCCTTTATCTTCCTCTTTTGTATGTAACATTTCTGGCAGACTTCTTCCAGGAGGAAGATCTACATTTGGAGAATGTGTATTATTCAGAGATGAAAGATGCTGGTTTCTTTGATGCTGATTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_40

Protein Analysis

307

Amino Acids

34.68

Weight (kDa)

6.16

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05010 AT5G27210
fragaria_vesca	FvH4_5g14000 FvH4_5g14000 FvH4_6g04200
malus_domestica	MD00G1051800.v1.1 MD06G1201800.v1.1 MD12G1231400.v1.1 MD14G1210800.v1.1
prunus_persica	Prupe.6G335200_v2.0.a1
pyrus_communis	pycom04g19140 pycom06g17770 pycom12g21420
rosa_chinensis	RchiOBHm_Chr3g0452881 RchiOBHm_Chr7g0182971
rosa_laevigata	RLG00000005094 RLG00000025563
rosa_multiflora	Rmu_sc0000014.1_g000018
rosa_roxburghii	Rroxscaffold_3G00270930 Rroxscaffold_6G00429890
rosa_rugosa	Rorug02G0643200 Rorug02G0643300 Rorug06G0451300
rosa_samantha	Rh3AG046100 Rh3BG048600 Rh3CG047200 Rh3DG048200 Rh7AG054500 Rh7BG054100 Rh7CG055600
rosa_wichuraiana	Rw3G003620 Rw7G004450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	673
AccB1I	GGYRCC	2 cut(s)	255, 770
AccI	GTMKAC	1 cut(s)	680
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	684, 726
AclWI	GGATC	2 cut(s)	67, 400
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	3 cut(s)	64, 340, 519
AfaI	GTAC	5 cut(s)	156, 179, 248, 550, 629
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	69, 703
AjnI	CCWGG	5 cut(s)	31, 54, 319, 335, 840
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AluBI	AGCT	7 cut(s)	8, 108, 204, 214, 273, 390, 437
AluI	AGCT	7 cut(s)	8, 108, 204, 214, 273, 390, 437
Alw21I	GWGCWC	2 cut(s)	10, 317
Alw26I	GTCTC	1 cut(s)	463
Alw44I	GTGCAC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	67, 400
AoxI	GGCC	2 cut(s)	183, 223
ApaLI	GTGCAC	1 cut(s)	313
ApoI	RAATTY	3 cut(s)	64, 340, 519
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	466
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	317
BanI	GGYRCC	2 cut(s)	255, 770
BanII	GRGCYC	1 cut(s)	10
BarI	GAAGNNNNNNTAC	2 cut(s)	147, 179
Bbv12I	GWGCWC	2 cut(s)	10, 317
BciT130I	CCWGG	5 cut(s)	33, 56, 321, 337, 842
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	4 cut(s)	74, 332, 590, 710
BfmI	CTRYAG	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	673
BglII	AGATCT	1 cut(s)	850
Bme1390I	CCNGG	6 cut(s)	33, 56, 321, 337, 367, 842
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	5 cut(s)	21, 94, 257, 467, 772
BmrFI	CCNGG	6 cut(s)	33, 56, 321, 337, 367, 842
BmsI	GCATC	3 cut(s)	360, 880, 895
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	4 cut(s)	54, 55, 124, 409
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 854, 884
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	435, 739
BseBI	CCWGG	5 cut(s)	33, 56, 321, 337, 842
BseDI	CCNNGG	4 cut(s)	54, 55, 124, 409
BseGI	GGATG	2 cut(s)	375, 564
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	435, 739
BseSI	GKGCMC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	185, 225
BshNI	GGYRCC	2 cut(s)	255, 770
BsiHKAI	GWGCWC	2 cut(s)	10, 317
BsiSI	CCGG	2 cut(s)	226, 366
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	2 cut(s)	185, 225
Bsp1286I	GDGCHC	2 cut(s)	10, 317
Bsp143I	GATC	6 cut(s)	59, 240, 405, 544, 553, 850
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	2 cut(s)	684, 726
BspANI	GGCC	2 cut(s)	185, 225
BspCNI	CTCAG	1 cut(s)	473
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	5 cut(s)	21, 94, 257, 467, 772
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	2 cut(s)	67, 400
BspT107I	GGYRCC	2 cut(s)	255, 770
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	435, 739
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	4 cut(s)	54, 55, 124, 409
BssMI	GATC	6 cut(s)	59, 240, 405, 544, 553, 850
BssNAI	GTATAC	1 cut(s)	681
BssT1I	CCWWGG	2 cut(s)	124, 409
Bst1107I	GTATAC	1 cut(s)	681
Bst2UI	CCWGG	5 cut(s)	33, 56, 321, 337, 842
Bst4CI	ACNGT	1 cut(s)	778
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstC8I	GCNNGC	7 cut(s)	6, 110, 275, 392, 396, 724, 728
BstDEI	CTNAG	1 cut(s)	460
BstDSI	CCRYGG	1 cut(s)	124
BstEII	GGTNACC	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	375, 564
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	6 cut(s)	62, 243, 408, 547, 556, 853
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	6 cut(s)	59, 240, 405, 544, 553, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 665, 719
BstNI	CCWGG	5 cut(s)	33, 56, 321, 337, 842
BstPI	GGTNACC	1 cut(s)	651
BstSCI	CCNGG	6 cut(s)	31, 54, 319, 335, 365, 840
BstSFI	CTRYAG	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BstZ17I	GTATAC	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	185, 225
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	375, 564
BtsIMutI	CAGTG	1 cut(s)	774
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	7 cut(s)	6, 110, 275, 392, 396, 724, 728
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	466
Csp6I	GTAC	5 cut(s)	155, 178, 247, 549, 628
CviAII	CATG	5 cut(s)	125, 221, 306, 691, 791
CviQI	GTAC	5 cut(s)	155, 178, 247, 549, 628
DdeI	CTNAG	1 cut(s)	460
DpnI	GATC	6 cut(s)	61, 242, 407, 546, 555, 852
DpnII	GATC	6 cut(s)	59, 240, 405, 544, 553, 850
EaeI	YGGCCR	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	124, 409
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	651
EcoRI	GAATTC	1 cut(s)	519
EcoRII	CCWGG	5 cut(s)	31, 54, 319, 335, 840
EcoT14I	CCWWGG	2 cut(s)	124, 409
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	124, 409
FaeI	CATG	5 cut(s)	128, 224, 309, 694, 794
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	5 cut(s)	124, 220, 305, 690, 790
FauI	CCCGC	1 cut(s)	719
FblI	GTMKAC	1 cut(s)	680
FokI	GGATG	2 cut(s)	382, 571
FriOI	GRGCYC	1 cut(s)	10
FspBI	CTAG	4 cut(s)	74, 332, 590, 710
HaeIII	GGCC	2 cut(s)	185, 225
HapII	CCGG	2 cut(s)	226, 366
Hin1II	CATG	5 cut(s)	128, 224, 309, 694, 794
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	3 cut(s)	202, 388, 435
HinfI	GANTC	2 cut(s)	36, 99
HpaII	CCGG	2 cut(s)	226, 366
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	7 cut(s)	299, 315, 357, 428, 535, 583, 681
Hpy188I	TCNGA	2 cut(s)	558, 880
Hpy188III	TCNNGA	2 cut(s)	96, 208
Hpy8I	GTNNAC	7 cut(s)	299, 315, 357, 428, 535, 583, 681
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4V	TGCA	4 cut(s)	315, 422, 602, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 665, 719
HpyF3I	CTNAG	1 cut(s)	460
Hsp92II	CATG	5 cut(s)	128, 224, 309, 694, 794
Kzo9I	GATC	6 cut(s)	59, 240, 405, 544, 553, 850
LmnI	GCTCC	1 cut(s)	25
LweI	GCATC	3 cut(s)	360, 880, 895
MaeI	CTAG	4 cut(s)	74, 332, 590, 710
MaeIII	GTNAC	2 cut(s)	651, 817
MalI	GATC	6 cut(s)	61, 242, 407, 546, 555, 852
MboI	GATC	6 cut(s)	59, 240, 405, 544, 553, 850
MboII	GAAGA	3 cut(s)	794, 829, 860
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	2 cut(s)	10, 317
MluCI	AATT	7 cut(s)	42, 64, 150, 340, 415, 519, 603
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	10, 34, 169, 373, 816, 838
MroXI	GAANNNNTTC	1 cut(s)	203
MslI	CAYNNNNRTG	2 cut(s)	310, 695
MspA1I	CMGCKG	2 cut(s)	108, 686
MspI	CCGG	2 cut(s)	226, 366
MspR9I	CCNGG	6 cut(s)	33, 56, 321, 337, 367, 842
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	5 cut(s)	33, 56, 321, 337, 842
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	191, 665, 719
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	124
NdeII	GATC	6 cut(s)	59, 240, 405, 544, 553, 850
NlaIII	CATG	5 cut(s)	128, 224, 309, 694, 794
NlaIV	GGNNCC	5 cut(s)	21, 94, 257, 467, 772
PasI	CCCWGGG	1 cut(s)	55
PctI	GAATGC	1 cut(s)	668
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	99
PfoI	TCCNGGA	3 cut(s)	319, 365, 840
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	466
Psp124BI	GAGCTC	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	5 cut(s)	31, 54, 319, 335, 840
PspEI	GGTNACC	1 cut(s)	651
PspGI	CCWGG	5 cut(s)	31, 54, 319, 335, 840
PspN4I	GGNNCC	5 cut(s)	21, 94, 257, 467, 772
PspPI	GGNCC	1 cut(s)	466
PspPPI	RGGWCCY	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	108
RsaI	GTAC	5 cut(s)	156, 179, 248, 550, 629
RsaNI	GTAC	5 cut(s)	155, 178, 247, 549, 628
RseI	CAYNNNNRTG	2 cut(s)	310, 695
SacI	GAGCTC	1 cut(s)	10
Sau3AI	GATC	6 cut(s)	59, 240, 405, 544, 553, 850
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	6 cut(s)	33, 56, 321, 337, 367, 842
SduI	GDGCHC	2 cut(s)	10, 317
SfaNI	GCATC	3 cut(s)	360, 880, 895
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	2 cut(s)	310, 695
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	7 cut(s)	42, 64, 150, 340, 415, 519, 603
SsiI	CCGC	2 cut(s)	684, 726
SspMI	CTAG	4 cut(s)	74, 332, 590, 710
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	6 cut(s)	31, 54, 319, 335, 365, 840
StyI	CCWWGG	2 cut(s)	124, 409
TaaI	ACNGT	1 cut(s)	778
TaqI	TCGA	1 cut(s)	209
TasI	AATT	7 cut(s)	42, 64, 150, 340, 415, 519, 603
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	99
TscAI	CASTG	1 cut(s)	781
TspDTI	ATGAA	3 cut(s)	575, 604, 899
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	1 cut(s)	781
VneI	GTGCAC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	3 cut(s)	64, 340, 519
XmiI	GTMKAC	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	4 cut(s)	74, 332, 590, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.