Rh3CG047200

Predicted membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004430
Physical Location & Seq
Reverse (-)
3219558 .. 3222716
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG047200.1

Sequence Viewer

Length: 690 bp
ATGTTCATAGTTTTCCAGAGGCAGTTCTTGAACCTAATACCAGGTAGGGTTGTCACTTTCTTGTCACAGGCATGGGAATGCACACCTGATAAAGAAATGGCATGGAATGTCTTATCTTTGTTCACAACTTCCGGAATGTTATTTTTGGAAGTAAGCTTGCTGGCATTTTTACTCCAAGGGAATTATGCAAGTGGACTGGAAGCGTTGACACGAACTTTTGTTATCTCAGGGATTCTCGTTGGTTTGGATTTACTTCTGAAGGCAATTTATATGTTTGGATTTGGAATTCCGCTGTTTGTCGACGACACTGATCATACACATCAGATGAAGTGGAACTTGTGGTCTGTCCATAGGCTAGTACTAACTGCAGTTTATGGTTTCATATTGTTCATGTACCATTCCAAGTGGAGAGAAAGGCTACCCGCGAGACCTGCATTCTACAATTATACAGCTATCATGTTTCTGATGAATGTACTAGCAATGTTTGCTTGTGGACTTACAGGAAATGGAGGAGCTGGATTTGGGTTTTGGTTATATGGCGCCACTATTGTCTGTTACCATGCCTTCTATCTTCCTCTTTTATATGTAACATTTCTGGCAGACTTCTTCCAGGAGGATGATTTACACTTGGAGAATGTATATTATTCAGAGATGAAAGATGCTGGTTTCTTTGATGCTGATTGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_40

Protein Analysis

229

Amino Acids

26.38

Weight (kDa)

5.12

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_40 PF10160 21 - 216 2.5e-92 Predicted membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 539
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 425
AccIII TCCGGA 1 cut(s) 131
AciI CCGC 2 cut(s) 290, 423
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 540
AfaI GTAC 3 cut(s) 360, 395, 474
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 2 cut(s) 40, 609
AluBI AGCT 3 cut(s) 156, 452, 515
AluI AGCT 3 cut(s) 156, 452, 515
Alw26I GTCTC 1 cut(s) 421
Aor13HI TCCGGA 1 cut(s) 131
ApoI RAATTY 1 cut(s) 285
AspLEI GCGC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 539
BciT130I CCWGG 2 cut(s) 42, 611
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 2 cut(s) 356, 476
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 439
BmcAI AGTACT 1 cut(s) 360
Bme1390I CCNGG 2 cut(s) 42, 611
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 2 cut(s) 42, 611
BmsI GCATC 2 cut(s) 649, 664
BsaHI GRCGYC 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 2 cut(s) 42, 611
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 622
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 525
Bsh1236I CGCG 1 cut(s) 425
BshNI GGYRCC 1 cut(s) 539
BsiSI CCGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 421
BsmI GAATGC 2 cut(s) 83, 434
Bso31I GGTCTC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 2 cut(s) 290, 423
BspCNI CTCAG 1 cut(s) 239
BspEI TCCGGA 1 cut(s) 131
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 1 cut(s) 541
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 42, 611
BstACI GRCGYC 1 cut(s) 540
BstAPI GCANNNNNTGC 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 158, 162
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 425
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 431, 485
BstNI CCWGG 2 cut(s) 42, 611
BstSCI CCNGG 2 cut(s) 40, 609
BstSFI CTRYAG 1 cut(s) 366
BstUI CGCG 1 cut(s) 425
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 306
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 158, 162
CfoI GCGC 1 cut(s) 542
CsiI ACCWGGT 1 cut(s) 40
Csp6I GTAC 3 cut(s) 359, 394, 473
CviAII CATG 5 cut(s) 72, 102, 391, 457, 560
CviJI RGCY 5 cut(s) 156, 355, 418, 452, 515
CviKI_1 RGCY 5 cut(s) 156, 355, 418, 452, 515
CviQI GTAC 3 cut(s) 359, 394, 473
DdeI CTNAG 1 cut(s) 226
DinI GGCGCC 1 cut(s) 541
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 40, 609
EcoT14I CCWWGG 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 541
EheI GGCGCC 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 5 cut(s) 75, 105, 394, 460, 563
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 5 cut(s) 71, 101, 390, 456, 559
FauI CCCGC 1 cut(s) 430
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 300
FokI GGATG 1 cut(s) 629
FspBI CTAG 2 cut(s) 356, 476
GlaI GCGC 1 cut(s) 541
HaeII RGCGCY 1 cut(s) 543
HapII CCGG 1 cut(s) 132
HhaI GCGC 1 cut(s) 542
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 5 cut(s) 75, 105, 394, 460, 563
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 2 cut(s) 207, 301
HindII GTYRAC 2 cut(s) 207, 301
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 5 cut(s) 123, 194, 207, 301, 494
Hpy188I TCNGA 4 cut(s) 258, 324, 465, 649
Hpy188III TCNNGA 3 cut(s) 16, 28, 132
Hpy8I GTNNAC 5 cut(s) 123, 194, 207, 301, 494
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 253, 574
HpyCH4V TGCA 4 cut(s) 81, 188, 368, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 485
HpyF3I CTNAG 1 cut(s) 226
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 5 cut(s) 75, 105, 394, 460, 563
HspAI GCGC 1 cut(s) 540
KasI GGCGCC 1 cut(s) 539
Kpn2I TCCGGA 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 512
LweI GCATC 2 cut(s) 649, 664
MabI ACCWGGT 1 cut(s) 40
MaeI CTAG 2 cut(s) 356, 476
MaeIII GTNAC 4 cut(s) 52, 63, 554, 586
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 2 cut(s) 563, 598
MluCI AATT 4 cut(s) 181, 264, 285, 442
Mly113I GGCGCC 1 cut(s) 540
MnlI CCTC 4 cut(s) 12, 503, 585, 607
MroI TCCGGA 1 cut(s) 131
MslI CAYNNNNRTG 2 cut(s) 70, 76
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 42, 611
Mva1269I GAATGC 2 cut(s) 83, 434
MvaI CCWGG 2 cut(s) 42, 611
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 2 cut(s) 431, 485
NarI GGCGCC 1 cut(s) 540
NdeII GATC 1 cut(s) 310
NlaIII CATG 5 cut(s) 75, 105, 394, 460, 563
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 2 cut(s) 52, 63
PctI GAATGC 2 cut(s) 83, 434
PfeI GAWTC 1 cut(s) 232
PfoI TCCNGGA 1 cut(s) 609
PluTI GGCGCC 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 40, 609
PspGI CCWGG 2 cut(s) 40, 609
PspN4I GGNNCC 1 cut(s) 541
PstI CTGCAG 1 cut(s) 370
RsaI GTAC 3 cut(s) 360, 395, 474
RsaNI GTAC 3 cut(s) 359, 394, 473
RseI CAYNNNNRTG 2 cut(s) 70, 76
SalI GTCGAC 1 cut(s) 299
Sau3AI GATC 1 cut(s) 310
ScaI AGTACT 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 42, 611
SetI ASST 7 cut(s) 36, 46, 88, 158, 433, 454, 517
SexAI ACCWGGT 1 cut(s) 40
SfaNI GCATC 2 cut(s) 649, 664
SfcI CTRYAG 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 541
SmiMI CAYNNNNRTG 2 cut(s) 70, 76
Sse9I AATT 4 cut(s) 181, 264, 285, 442
SsiI CCGC 2 cut(s) 290, 423
SspDI GGCGCC 1 cut(s) 539
SspMI CTAG 2 cut(s) 356, 476
StyD4I CCNGG 2 cut(s) 40, 609
StyI CCWWGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 300
TasI AATT 4 cut(s) 181, 264, 285, 442
TatI WGTACW 2 cut(s) 358, 472
TfiI GAWTC 1 cut(s) 232
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 52, 63
Tsp45I GTSAC 2 cut(s) 52, 63
TspDTI ATGAA 5 cut(s) 341, 370, 379, 482, 668
TspRI CASTG 1 cut(s) 313
XapI RAATTY 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 2 cut(s) 356, 476
ZrmI AGTACT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.