Rh7CG055600

Predicted membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004430
Physical Location & Seq
Forward (+)
4054411 .. 4056634
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG055600.1

Sequence Viewer

Length: 702 bp
ATGGCAACAGATCTCCTACAACACCTGAACGCCTCGGTCAACCCGCCGATCCCAAGCCTTCCCGCCACCGTCGACGGCGAGGATCGGAGGTTGTCCAGCTCAGACTGCCATGGCCTCTGGTACGACGCCGTTCTCGTCGTCCCTTCCGTCGTTTTCTTGGTCTACCTGGCCTTCCACGCCAAGAAGAACCTCAAGAAGCTCTCTAATGGCAGCTCTTATATCATGATTTCCTATTATGCCCTCGTCTGGGTCGCCGCCCTCCTCAACCTCGCCTGGTGCGCTCTCCAGGGTTGGCAATGCTCTGGTGGAAAGGCGGTGGCTTGGAATCTGTTGACTTTGTTCACAGCTTCTGCAATGATGTGTTTGGAGATTAGCTTGGTGGCTTTTTTGCTCCAGGACAATTACTCGAGTGGAGTTGAAGCTCTAGCTCAGACTTTCCTTTTCTCAGGGATCGTTGTGAGCGTGGATACACTGCTCAAGGCAATCTATGTATTTGGATTTGGGGTCCCTCTCTTCATGGTTGGTGTTGGAGGTACGACTGGAGTGAAATGGGGCCTATGGTTCTTCCACAAATCATTGCTTACTGCAGTCTATGGCTTCATATTGTTTGTGCATTTCTCCAAATGGAGAGAAAAGCTTCCGCGTGAGTACATGTCTGGTTCTTCTATTGCCACAGCTTTGTTTGACCAATTTAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_40

Protein Analysis

233

Amino Acids

25.67

Weight (kDa)

7.68

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_40 PF10160 35 - 215 1.7e-72 Predicted membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 72, 162
AccII CGCG 1 cut(s) 643
AciI CCGC 5 cut(s) 44, 63, 255, 314, 641
AclWI GGATC 3 cut(s) 43, 90, 458
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 3 cut(s) 122, 535, 650
AfiI CCNNNNNNNGG 2 cut(s) 246, 247
AflIII ACRYGT 2 cut(s) 651, 696
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 4 cut(s) 165, 272, 285, 393
AluBI AGCT 9 cut(s) 99, 199, 213, 347, 375, 422, 428, 637, 677
AluI AGCT 9 cut(s) 99, 199, 213, 347, 375, 422, 428, 637, 677
AlwI GGATC 3 cut(s) 43, 90, 458
AlwNI CAGNNNCTG 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 3 cut(s) 112, 168, 553
ApeKI GCWGC 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 505, 553
AvaI CYCGRG 1 cut(s) 406
AvaII GGWCC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 222
BceAI ACGGC 2 cut(s) 91, 113
BciT130I CCWGG 4 cut(s) 167, 274, 287, 395
BciVI GTATCC 1 cut(s) 460
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 585
BfuI GTATCC 1 cut(s) 460
BglII AGATCT 1 cut(s) 10
BisI GCNGC 2 cut(s) 211, 255
BlsI GCNGC 2 cut(s) 212, 256
Bme1390I CCNGG 4 cut(s) 167, 274, 287, 395
Bme18I GGWCC 1 cut(s) 505
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 505, 553
BmiI GGNNCC 3 cut(s) 506, 507, 554
BmrFI CCNGG 4 cut(s) 167, 274, 287, 395
BpmI CTGGAG 3 cut(s) 269, 377, 561
BpuEI CTTGAG 2 cut(s) 176, 461
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 33, 109, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 247
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 3 cut(s) 302, 360, 575
BseBI CCWGG 4 cut(s) 167, 274, 287, 395
BseDI CCNNGG 3 cut(s) 33, 109, 286
BseLI CCNNNNNNNGG 2 cut(s) 246, 247
BseMI GCAATG 3 cut(s) 302, 360, 575
BseMII CTCAG 3 cut(s) 114, 443, 459
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 643
BshFI GGCC 3 cut(s) 114, 170, 555
BsiHKCI CYCGRG 1 cut(s) 406
BslFI GGGAC 2 cut(s) 125, 491
BslI CCNNNNNNNGG 2 cut(s) 246, 247
BsmFI GGGAC 2 cut(s) 125, 491
BsnI GGCC 3 cut(s) 114, 170, 555
BsoBI CYCGRG 1 cut(s) 406
Bsp143I GATC 4 cut(s) 10, 48, 82, 450
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 5 cut(s) 44, 63, 255, 314, 641
BspANI GGCC 3 cut(s) 114, 170, 555
BspCNI CTCAG 3 cut(s) 113, 442, 458
BspFNI CGCG 1 cut(s) 643
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 506, 507, 554
BspMAI CTGCAG 1 cut(s) 589
BspPI GGATC 3 cut(s) 43, 90, 458
BsrDI GCAATG 3 cut(s) 302, 360, 575
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 3 cut(s) 33, 109, 286
BssMI GATC 4 cut(s) 10, 48, 82, 450
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 4 cut(s) 167, 274, 287, 395
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 518
BstACI GRCGYC 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 100, 429, 445
BstDSI CCRYGG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 643
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 13, 51, 85, 453
BstMBI GATC 4 cut(s) 10, 48, 82, 450
BstMWI GCNNNNNNNGC 3 cut(s) 105, 176, 278
BstNI CCWGG 4 cut(s) 167, 274, 287, 395
BstNSI RCATGY 2 cut(s) 655, 700
BstSCI CCNGG 4 cut(s) 165, 272, 285, 393
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 3 cut(s) 114, 170, 555
BtgI CCRYGG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 470
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 505, 553
CseI GACGC 1 cut(s) 134
Csp6I GTAC 3 cut(s) 121, 534, 649
CviAII CATG 5 cut(s) 110, 223, 517, 652, 697
CviQI GTAC 3 cut(s) 121, 534, 649
DdeI CTNAG 3 cut(s) 100, 429, 445
DpnI GATC 4 cut(s) 12, 50, 84, 452
DpnII GATC 4 cut(s) 10, 48, 82, 450
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 406
EcoO109I RGGNCCY 2 cut(s) 505, 553
EcoRII CCWGG 4 cut(s) 165, 272, 285, 393
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 5 cut(s) 113, 226, 520, 655, 700
FaqI GGGAC 2 cut(s) 125, 491
FatI CATG 5 cut(s) 109, 222, 516, 651, 696
FauI CCCGC 2 cut(s) 51, 70
FblI GTMKAC 2 cut(s) 72, 162
Fnu4HI GCNGC 2 cut(s) 211, 255
Fsp4HI GCNGC 2 cut(s) 211, 255
FspBI CTAG 1 cut(s) 425
GlaI GCGC 1 cut(s) 280
GluI GCNGC 2 cut(s) 211, 255
GsuI CTGGAG 3 cut(s) 269, 377, 561
HaeIII GGCC 3 cut(s) 114, 170, 555
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 5 cut(s) 113, 226, 520, 655, 700
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 3 cut(s) 40, 73, 333
HindII GTYRAC 3 cut(s) 40, 73, 333
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 1 cut(s) 325
Hpy166II GTNNAC 5 cut(s) 40, 73, 163, 333, 342
Hpy188I TCNGA 3 cut(s) 87, 103, 432
Hpy188III TCNNGA 2 cut(s) 193, 223
Hpy8I GTNNAC 5 cut(s) 40, 73, 163, 333, 342
Hpy99I CGWCG 5 cut(s) 74, 77, 128, 140, 152
HpyAV CCTTC 3 cut(s) 68, 153, 181
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 353, 587, 613
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 176, 278
HpyF3I CTNAG 3 cut(s) 100, 429, 445
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 5 cut(s) 113, 226, 520, 655, 700
HspAI GCGC 1 cut(s) 279
KflI GGGWCCC 1 cut(s) 505
Kzo9I GATC 4 cut(s) 10, 48, 82, 450
LmnI GCTCC 1 cut(s) 396
Lsp1109I GCAGC 1 cut(s) 222
MaeI CTAG 1 cut(s) 425
MalI GATC 4 cut(s) 12, 50, 84, 452
MboI GATC 4 cut(s) 10, 48, 82, 450
MboII GAAGA 4 cut(s) 196, 505, 556, 654
MflI RGATCY 1 cut(s) 10
MluCI AATT 2 cut(s) 400, 689
MmeI TCCRAC 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 1 cut(s) 693
MspR9I CCNGG 4 cut(s) 167, 274, 287, 395
MvaI CCWGG 4 cut(s) 167, 274, 287, 395
MvnI CGCG 1 cut(s) 643
MwoI GCNNNNNNNGC 3 cut(s) 105, 176, 278
NcoI CCATGG 1 cut(s) 109
NdeII GATC 4 cut(s) 10, 48, 82, 450
NlaIII CATG 5 cut(s) 113, 226, 520, 655, 700
NlaIV GGNNCC 3 cut(s) 506, 507, 554
NspI RCATGY 2 cut(s) 655, 700
PaeR7I CTCGAG 1 cut(s) 406
PagI TCATGA 1 cut(s) 222
PciI ACATGT 2 cut(s) 651, 696
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 144, 459
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 2 cut(s) 212, 256
PpuMI RGGWCCY 1 cut(s) 505
PscI ACATGT 2 cut(s) 651, 696
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 4 cut(s) 165, 272, 285, 393
PspGI CCWGG 4 cut(s) 165, 272, 285, 393
PspN4I GGNNCC 3 cut(s) 506, 507, 554
PspPI GGNCC 2 cut(s) 505, 553
PspPPI RGGWCCY 1 cut(s) 505
PspXI VCTCGAGB 1 cut(s) 406
PstI CTGCAG 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 3 cut(s) 122, 535, 650
RsaNI GTAC 3 cut(s) 121, 534, 649
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 2 cut(s) 211, 255
Sau3AI GATC 4 cut(s) 10, 48, 82, 450
Sau96I GGNCC 2 cut(s) 505, 553
ScrFI CCNGG 4 cut(s) 167, 274, 287, 395
SfcI CTRYAG 1 cut(s) 585
Sfr274I CTCGAG 1 cut(s) 406
SgrDI CGTCGACG 1 cut(s) 71
SinI GGWCC 1 cut(s) 505
SlaI CTCGAG 1 cut(s) 406
SmlI CTYRAG 3 cut(s) 191, 406, 476
SmoI CTYRAG 3 cut(s) 191, 406, 476
Sse9I AATT 2 cut(s) 400, 689
SsiI CCGC 5 cut(s) 44, 63, 255, 314, 641
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 4 cut(s) 165, 272, 285, 393
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 72, 407
TaqII GACCGA 1 cut(s) 25
TasI AATT 2 cut(s) 400, 689
TatI WGTACW 1 cut(s) 648
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 1 cut(s) 477
TseI GCWGC 1 cut(s) 210
TspDTI ATGAA 2 cut(s) 505, 589
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 505
XceI RCATGY 2 cut(s) 655, 700
XhoI CTCGAG 1 cut(s) 406
XmiI GTMKAC 2 cut(s) 72, 162
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.