Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000014.1

Orthogroup ID

OG0004430

Physical Location & Seq

Genomic Coordinates Reverse (-)

108467 .. 110482

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000014.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggcaacaaatctcctacaacacctgaacgcctcggtcaacccgccgatcccaagccttcccgccaccgtcgacggcgaggatcggaggttgtccagctcagactgccatggcctctggtacgacgccgttctcgtcgtcccttccgtcgttttcttggtctacttggccttccacgccaagaagaacctcaagaagctctctaatggcagctcttacatcatgatttcctattatgccctcgtctgggtcgccgccctcctcaacctcgcctggtgcgctcttcagggttggcaatgctctggtggaaaggcggtggcttggaatctgttgactttgttcacagcttctgcaatgatgtgtttggagattagcttggtggcttttttgctccaggacaattactcgactggagttgaagctctagctcagactttccttttctcagggatcgttgtgagcgtggatacactgctcaaggcaatctatgtatttggatttggggtccctctcttcatggttggtgttggaggtacgactggagtgaaatggggcctatggttcttccacaaatcattgcttactgcagtctatggcttcatattgtttgtgcatttctccaaatggagagaaaagcttccgcccagaccagccttctacaactacattgtcgtgatgtttgtatttggtgctgtgacaatgtttgcttgtgggcttgctggaatcggggctggttttggcatttggttgtacaatttgacagaaatatgttaccacgctctctatcttccttttctatatgtaaccttcctggcagattttttccaggaagaacaatttcttctggataatgcatattactctgagatgaaggatgcagggttcttcgatgctgattgggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_40

Protein Analysis

301

Amino Acids

33.57

Weight (kDa)

5.63

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05010 AT5G27210
fragaria_vesca	FvH4_5g14000 FvH4_5g14000 FvH4_6g04200
malus_domestica	MD00G1051800.v1.1 MD06G1201800.v1.1 MD12G1231400.v1.1 MD14G1210800.v1.1
prunus_persica	Prupe.6G335200_v2.0.a1
pyrus_communis	pycom04g19140 pycom06g17770 pycom12g21420
rosa_chinensis	RchiOBHm_Chr3g0452881 RchiOBHm_Chr7g0182971
rosa_laevigata	RLG00000005094 RLG00000025563
rosa_multiflora	Rmu_sc0000014.1_g000018
rosa_roxburghii	Rroxscaffold_3G00270930 Rroxscaffold_6G00429890
rosa_rugosa	Rorug02G0643200 Rorug02G0643300 Rorug06G0451300
rosa_samantha	Rh3AG046100 Rh3BG048600 Rh3CG047200 Rh3DG048200 Rh7AG054500 Rh7BG054100 Rh7CG055600
rosa_wichuraiana	Rw3G003620 Rw7G004450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	72, 162
AciI	CCGC	5 cut(s)	44, 63, 255, 314, 641
AclWI	GGATC	3 cut(s)	43, 90, 458
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	3 cut(s)	122, 535, 752
AfiI	CCNNNNNNNGG	2 cut(s)	246, 247
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	4 cut(s)	272, 393, 810, 825
AloI	GAACNNNNNNTCC	2 cut(s)	866, 898
AluBI	AGCT	8 cut(s)	99, 199, 213, 347, 375, 422, 428, 637
AluI	AGCT	8 cut(s)	99, 199, 213, 347, 375, 422, 428, 637
AlwI	GGATC	3 cut(s)	43, 90, 458
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	112, 168, 553
ApeKI	GCWGC	1 cut(s)	210
Asp700I	GAANNNNTTC	2 cut(s)	636, 837
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	505, 553
AvaII	GGWCC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	222
BceAI	ACGGC	2 cut(s)	91, 113
BciT130I	CCWGG	4 cut(s)	274, 395, 812, 827
BciVI	GTATCC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	2 cut(s)	211, 255
BlsI	GCNGC	2 cut(s)	212, 256
Bme1390I	CCNGG	4 cut(s)	274, 395, 812, 827
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	505, 553
BmiI	GGNNCC	3 cut(s)	506, 507, 554
BmrFI	CCNGG	4 cut(s)	274, 395, 812, 827
BmsI	GCATC	2 cut(s)	865, 880
BpmI	CTGGAG	3 cut(s)	377, 432, 561
BpuEI	CTTGAG	2 cut(s)	176, 461
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	33, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 247
Bse1I	ACTGG	2 cut(s)	415, 544
Bse3DI	GCAATG	3 cut(s)	302, 360, 575
BseBI	CCWGG	4 cut(s)	274, 395, 812, 827
BseDI	CCNNGG	2 cut(s)	33, 109
BseGI	GGATG	1 cut(s)	880
BseLI	CCNNNNNNNGG	2 cut(s)	246, 247
BseMI	GCAATG	3 cut(s)	302, 360, 575
BseMII	CTCAG	4 cut(s)	114, 443, 459, 855
BseNI	ACTGG	2 cut(s)	415, 544
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	3 cut(s)	114, 170, 555
BslFI	GGGAC	2 cut(s)	125, 491
BslI	CCNNNNNNNGG	2 cut(s)	246, 247
BsmFI	GGGAC	2 cut(s)	125, 491
BsnI	GGCC	3 cut(s)	114, 170, 555
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	3 cut(s)	48, 82, 450
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	5 cut(s)	44, 63, 255, 314, 641
BspANI	GGCC	3 cut(s)	114, 170, 555
BspCNI	CTCAG	4 cut(s)	113, 442, 458, 856
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	506, 507, 554
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	3 cut(s)	43, 90, 458
BspQI	GCTCTTC	1 cut(s)	288
BsrDI	GCAATG	3 cut(s)	302, 360, 575
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	2 cut(s)	415, 544
BssECI	CCNNGG	2 cut(s)	33, 109
BssMI	GATC	3 cut(s)	48, 82, 450
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	4 cut(s)	274, 395, 812, 827
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	288, 518
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	4 cut(s)	100, 429, 445, 864
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	880
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	51, 85, 453
BstMBI	GATC	3 cut(s)	48, 82, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 176, 278
BstNI	CCWGG	4 cut(s)	274, 395, 812, 827
BstSCI	CCNGG	4 cut(s)	272, 393, 810, 825
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	3 cut(s)	114, 170, 555
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	880
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	717
CaiI	CAGNNNCTG	1 cut(s)	350
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	505, 553
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	3 cut(s)	121, 534, 751
CviAII	CATG	3 cut(s)	110, 223, 517
CviQI	GTAC	3 cut(s)	121, 534, 751
DdeI	CTNAG	4 cut(s)	100, 429, 445, 864
DpnI	GATC	3 cut(s)	50, 84, 452
DpnII	GATC	3 cut(s)	48, 82, 450
Eam1104I	CTCTTC	2 cut(s)	288, 518
EarI	CTCTTC	2 cut(s)	288, 518
EciI	GGCGGA	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	505, 553
EcoRII	CCWGG	4 cut(s)	272, 393, 810, 825
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	113, 226, 520
FaqI	GGGAC	2 cut(s)	125, 491
FatI	CATG	3 cut(s)	109, 222, 516
FauI	CCCGC	2 cut(s)	51, 70
FblI	GTMKAC	2 cut(s)	72, 162
Fnu4HI	GCNGC	2 cut(s)	211, 255
FokI	GGATG	1 cut(s)	887
Fsp4HI	GCNGC	2 cut(s)	211, 255
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	2 cut(s)	211, 255
GsuI	CTGGAG	3 cut(s)	377, 432, 561
HaeIII	GGCC	3 cut(s)	114, 170, 555
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	113, 226, 520
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	3 cut(s)	40, 73, 333
HindII	GTYRAC	3 cut(s)	40, 73, 333
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	2 cut(s)	325, 723
Hpy166II	GTNNAC	5 cut(s)	40, 73, 163, 333, 342
Hpy188I	TCNGA	4 cut(s)	87, 103, 432, 865
Hpy188III	TCNNGA	4 cut(s)	193, 223, 673, 845
Hpy8I	GTNNAC	5 cut(s)	40, 73, 163, 333, 342
Hpy99I	CGWCG	5 cut(s)	74, 77, 128, 140, 152
HpyAV	CCTTC	6 cut(s)	68, 153, 181, 664, 817, 865
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	353, 587, 613, 854, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 176, 278
HpyF3I	CTNAG	4 cut(s)	100, 429, 445, 864
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	113, 226, 520
HspAI	GCGC	1 cut(s)	279
KflI	GGGWCCC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	48, 82, 450
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	396
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	2 cut(s)	865, 880
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	3 cut(s)	694, 770, 802
MalI	GATC	3 cut(s)	50, 84, 452
MboI	GATC	3 cut(s)	48, 82, 450
MboII	GAAGA	8 cut(s)	196, 275, 505, 556, 779, 833, 842, 877
MluCI	AATT	3 cut(s)	400, 754, 836
MmeI	TCCRAC	1 cut(s)	508
Mph1103I	ATGCAT	1 cut(s)	856
MroXI	GAANNNNTTC	2 cut(s)	636, 837
MslI	CAYNNNNRTG	1 cut(s)	671
MspR9I	CCNGG	4 cut(s)	274, 395, 812, 827
MvaI	CCWGG	4 cut(s)	274, 395, 812, 827
MwoI	GCNNNNNNNGC	3 cut(s)	105, 176, 278
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	3 cut(s)	48, 82, 450
NlaIII	CATG	3 cut(s)	113, 226, 520
NlaIV	GGNNCC	3 cut(s)	506, 507, 554
NmuCI	GTSAC	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	856
PagI	TCATGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 144, 459
PdmI	GAANNNNTTC	2 cut(s)	636, 837
PfeI	GAWTC	2 cut(s)	325, 723
PfoI	TCCNGGA	2 cut(s)	393, 825
PkrI	GCNGC	2 cut(s)	212, 256
PpuMI	RGGWCCY	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	4 cut(s)	272, 393, 810, 825
PspGI	CCWGG	4 cut(s)	272, 393, 810, 825
PspN4I	GGNNCC	3 cut(s)	506, 507, 554
PspPI	GGNCC	2 cut(s)	505, 553
PspPPI	RGGWCCY	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	589
PstNI	CAGNNNCTG	1 cut(s)	350
RsaI	GTAC	3 cut(s)	122, 535, 752
RsaNI	GTAC	3 cut(s)	121, 534, 751
RseI	CAYNNNNRTG	1 cut(s)	671
SalI	GTCGAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	288
SatI	GCNGC	2 cut(s)	211, 255
Sau3AI	GATC	3 cut(s)	48, 82, 450
Sau96I	GGNCC	2 cut(s)	505, 553
ScrFI	CCNGG	4 cut(s)	274, 395, 812, 827
SfaNI	GCATC	2 cut(s)	865, 880
SfcI	CTRYAG	1 cut(s)	585
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	191, 476
SmoI	CTYRAG	2 cut(s)	191, 476
Sse9I	AATT	3 cut(s)	400, 754, 836
SsiI	CCGC	5 cut(s)	44, 63, 255, 314, 641
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	4 cut(s)	272, 393, 810, 825
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	72, 407, 888
TaqII	GACCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	400, 754, 836
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	325, 723
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	3 cut(s)	505, 589, 884
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	505
XmiI	GTMKAC	2 cut(s)	72, 162
XmnI	GAANNNNTTC	2 cut(s)	636, 837
XspI	CTAG	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.