Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004430

Physical Location & Seq

Genomic Coordinates Forward (+)

21686427 .. 21688358

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17770.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGACGAACCTTCGAGAACACTTCAACACGTCGGTCAACTCGCCGATCCCGAGCCACCCAGCTACAGGCGGTCAAGATCAGAGCTTTTCCGTCGTCATCTCGCCGGAGTGCCATGGATTCTGGTACGACGCCGTTCTGGTGGTTCCCGCAGTCGTTTTCGTCGTGTACTTGGCGTTTCAAGCCAAGAAGAACGTCATCAAGCTCTCCAATGGAAGATCATACATCATGATATCCTATTATGCCCTTCTCTGGGTCGCCAGCCTTCTCAACCTCGCCTGGTGCGCTCTTCAGGCATGGCAGTGCTCAAGTGGGAAGGAGGTTGCTTGGAATGTGTTGTCATTGTTTACGGGTTCAGCAATGCTGGGATTGGAGATTAGCTTGGTGGGTTTCTTGCTCCAGGAGGATTATGCAAGTGGGGTTGAAGCTTTAGCTCATACTTTCTTGGTCTCTGGGATTGTTGTTGGTGTAGACCTACTGCTTAAGGTCATCTATGTATTCGGGTTTGGGGTACCGCTGTTCACTGTTGGCGTTGGAAGTACATATGGAGTGAAATGGGGCTTGTGGCTCATCCACAAATTATTGCTTACTGCAGTTTATGGCTTCATATTGTTTGTGCATTTCTCAAAGTGGAGAGAGAAGTTACCTCCCAGACCAGCATTCTACAACTACATCGTCATAATGTTTGTACTTAGTGCTTTGGCGTCGTTTGGTTGCGGGCTTGCTGGAATTGGAGCTGGTTTTGGAATCTGGTTGTACAATTTGACGGATATATGCTACCACACTCTCTATCTTCCGTTTCTGTACGTGATTTTTCTAGCTGATTTTTTCCAGGAAGAAAGTTTTCTCCTGGAGAATGCGTATTACTCCGAGATGAAGGATGCTGGGTTCTTTGATGCCGATTGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_40

Protein Analysis

304

Amino Acids

33.76

Weight (kDa)

5.43

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05010 AT5G27210
fragaria_vesca	FvH4_5g14000 FvH4_5g14000 FvH4_6g04200
malus_domestica	MD00G1051800.v1.1 MD06G1201800.v1.1 MD12G1231400.v1.1 MD14G1210800.v1.1
prunus_persica	Prupe.6G335200_v2.0.a1
pyrus_communis	pycom04g19140 pycom06g17770 pycom12g21420
rosa_chinensis	RchiOBHm_Chr3g0452881 RchiOBHm_Chr7g0182971
rosa_laevigata	RLG00000005094 RLG00000025563
rosa_multiflora	Rmu_sc0000014.1_g000018
rosa_roxburghii	Rroxscaffold_3G00270930 Rroxscaffold_6G00429890
rosa_rugosa	Rorug02G0643200 Rorug02G0643300 Rorug06G0451300
rosa_samantha	Rh3AG046100 Rh3BG048600 Rh3CG047200 Rh3DG048200 Rh7AG054500 Rh7BG054100 Rh7CG055600
rosa_wichuraiana	Rw3G003620 Rw7G004450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	4 cut(s)	72, 150, 515, 717
AclWI	GGATC	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	2 cut(s)	132, 704
AfaI	GTAC	7 cut(s)	128, 170, 513, 541, 690, 758, 806
AfiI	CCNNNNNNNGG	3 cut(s)	68, 252, 253
AflII	CTTAAG	1 cut(s)	482
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	28, 182, 425
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	4 cut(s)	278, 399, 831, 849
AloI	GAACNNNNNNTCC	2 cut(s)	872, 904
AluBI	AGCT	8 cut(s)	65, 87, 205, 381, 428, 434, 737, 821
AluI	AGCT	8 cut(s)	65, 87, 205, 381, 428, 434, 737, 821
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	843
Asp718I	GGTACC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	52
BaeI	ACNNNNGTAYC	2 cut(s)	503, 536
BanI	GGYRCC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	4 cut(s)	280, 401, 833, 851
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	2 cut(s)	818, 910
BfmI	CTRYAG	2 cut(s)	66, 591
BfrI	CTTAAG	1 cut(s)	482
Bme1390I	CCNGG	4 cut(s)	280, 401, 833, 851
BmeT110I	CYCGRG	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	147, 513
BmrFI	CCNGG	4 cut(s)	280, 401, 833, 851
BmsI	GCATC	2 cut(s)	871, 886
BpmI	CTGGAG	2 cut(s)	383, 872
BpuEI	CTTGAG	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	808
BsaHI	GRCGYC	2 cut(s)	132, 704
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 252, 253
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	4 cut(s)	280, 401, 833, 851
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	570, 886
BseLI	CCNNNNNNNGG	3 cut(s)	68, 252, 253
BseMI	GCAATG	1 cut(s)	366
BseYI	CCCAGC	3 cut(s)	61, 364, 884
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	3 cut(s)	68, 252, 253
BsmAI	GTCTC	1 cut(s)	454
BsmI	GAATGC	2 cut(s)	659, 862
Bso31I	GGTCTC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	3 cut(s)	48, 79, 218
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	4 cut(s)	72, 150, 515, 717
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	147, 513
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	511
BspTI	CTTAAG	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	366
BsrGI	TGTACA	1 cut(s)	756
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	48, 79, 218
BssNI	GRCGYC	2 cut(s)	132, 704
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	4 cut(s)	280, 401, 833, 851
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	2 cut(s)	132, 704
BstAFI	CTTAAG	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	756
BstBAI	YACGTR	1 cut(s)	808
BstC8I	GCNNGC	3 cut(s)	262, 719, 723
BstDEI	CTNAG	1 cut(s)	692
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	570, 886
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	3 cut(s)	51, 82, 221
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	3 cut(s)	48, 79, 218
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 284, 293
BstNI	CCWGG	4 cut(s)	280, 401, 833, 851
BstSCI	CCNGG	4 cut(s)	278, 399, 831, 849
BstSFI	CTRYAG	2 cut(s)	66, 591
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	570, 886
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	308, 522
Cac8I	GCNNGC	3 cut(s)	262, 719, 723
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	1 cut(s)	287
CseI	GACGC	2 cut(s)	140, 693
Csp6I	GTAC	7 cut(s)	127, 169, 512, 540, 689, 757, 805
CviAII	CATG	3 cut(s)	116, 229, 297
CviQI	GTAC	7 cut(s)	127, 169, 512, 540, 689, 757, 805
DdeI	CTNAG	1 cut(s)	692
DpnI	GATC	3 cut(s)	50, 81, 220
DpnII	GATC	3 cut(s)	48, 79, 218
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	52
EcoRII	CCWGG	4 cut(s)	278, 399, 831, 849
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	119, 232, 300
FatI	CATG	3 cut(s)	115, 228, 296
FauI	CCCGC	2 cut(s)	157, 710
FauNDI	CATATG	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	471
FokI	GGATG	2 cut(s)	557, 893
FspBI	CTAG	2 cut(s)	818, 910
GlaI	GCGC	1 cut(s)	286
GsaI	CCCAGC	3 cut(s)	65, 368, 888
GsuI	CTGGAG	2 cut(s)	383, 872
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	2 cut(s)	140, 693
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	2 cut(s)	132, 704
Hin1II	CATG	3 cut(s)	119, 232, 300
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	120, 747
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	5 cut(s)	40, 169, 348, 472, 522
Hpy188I	TCNGA	2 cut(s)	84, 871
Hpy188III	TCNNGA	4 cut(s)	17, 52, 77, 229
Hpy8I	GTNNAC	5 cut(s)	40, 169, 348, 472, 522
Hpy99I	CGWCG	6 cut(s)	10, 37, 98, 134, 167, 709
HpyAV	CCTTC	5 cut(s)	23, 257, 275, 310, 871
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	3 cut(s)	32, 195, 807
HpyCH4V	TGCA	3 cut(s)	413, 593, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 284, 293
HpyF3I	CTNAG	1 cut(s)	692
HpySE526I	ACGT	3 cut(s)	32, 195, 807
Hsp92I	GRCGYC	2 cut(s)	132, 704
Hsp92II	CATG	3 cut(s)	119, 232, 300
HspAI	GCGC	1 cut(s)	285
KpnI	GGTACC	1 cut(s)	515
Kzo9I	GATC	3 cut(s)	48, 79, 218
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	402, 734
LweI	GCATC	2 cut(s)	871, 886
MaeI	CTAG	2 cut(s)	818, 910
MaeII	ACGT	3 cut(s)	32, 195, 807
MaeIII	GTNAC	1 cut(s)	642
MalI	GATC	3 cut(s)	50, 81, 220
MboI	GATC	3 cut(s)	48, 79, 218
MboII	GAAGA	5 cut(s)	202, 228, 281, 785, 848
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	3 cut(s)	578, 729, 760
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	284, 313, 397, 657
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	517
MspCI	CTTAAG	1 cut(s)	482
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	4 cut(s)	280, 401, 833, 851
Mva1269I	GAATGC	2 cut(s)	659, 862
MvaI	CCWGG	4 cut(s)	280, 401, 833, 851
MwoI	GCNNNNNNNGC	3 cut(s)	182, 284, 293
NcoI	CCATGG	1 cut(s)	115
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	3 cut(s)	48, 79, 218
NlaIII	CATG	3 cut(s)	119, 232, 300
NlaIV	GGNNCC	2 cut(s)	147, 513
PagI	TCATGA	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 162
PctI	GAATGC	2 cut(s)	659, 862
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	120, 747
PfoI	TCCNGGA	3 cut(s)	399, 831, 849
Ppu21I	YACGTR	1 cut(s)	808
Psp6I	CCWGG	4 cut(s)	278, 399, 831, 849
PspFI	CCCAGC	3 cut(s)	61, 364, 884
PspGI	CCWGG	4 cut(s)	278, 399, 831, 849
PspN4I	GGNNCC	2 cut(s)	147, 513
PstI	CTGCAG	1 cut(s)	595
RsaI	GTAC	7 cut(s)	128, 170, 513, 541, 690, 758, 806
RsaNI	GTAC	7 cut(s)	127, 169, 512, 540, 689, 757, 805
RseI	CAYNNNNRTG	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	483
Sau3AI	GATC	3 cut(s)	48, 79, 218
ScrFI	CCNGG	4 cut(s)	280, 401, 833, 851
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	2 cut(s)	871, 886
SfcI	CTRYAG	2 cut(s)	66, 591
SmiMI	CAYNNNNRTG	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	307, 482
SmoI	CTYRAG	2 cut(s)	307, 482
Sse9I	AATT	3 cut(s)	578, 729, 760
SsiI	CCGC	4 cut(s)	72, 150, 515, 717
SspMI	CTAG	2 cut(s)	818, 910
StyD4I	CCNGG	4 cut(s)	278, 399, 831, 849
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	3 cut(s)	35, 198, 810
TaqI	TCGA	1 cut(s)	16
TaqII	GACCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	578, 729, 760
TatI	WGTACW	4 cut(s)	168, 539, 688, 756
TfiI	GAWTC	2 cut(s)	120, 747
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	308, 529
TspDTI	ATGAA	2 cut(s)	595, 890
TspGWI	ACGGA	3 cut(s)	82, 782, 786
TspRI	CASTG	2 cut(s)	308, 529
Vha464I	CTTAAG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	2 cut(s)	818, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.