Prupe.7G020900_v2.0.a1

Crossover junction endonuclease

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
3110245 .. 3118598
8354 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G020900.2

Sequence Viewer

Length: 1464 bp
ATGCAAGGGTTTTCCGAGACCGGTTCAGGCAGCTCTGAACCAGAAGACTTGTCTAAAAACTATAAGAGAACCAAAGGAAGCAGACGCTATGTTCCTCAGAAGAATTCTGTAGCATTTGCATTGTTGATTACACTTTACAGGGGAATTGGAAATGGGAATGAATTTATGCGTAAACAGGAGCTTATCGATGCAGCTGAAGCAAGTGGGCTTTCTCGCGTGCCAATTATGCCAGAGAAGGGAAAGGGAAAAGCTGGACGCTTTGGGAGTTCTGCAAGGGAGTCGTATAGTGGATGGTCCTGCATGAAGACATTAGTAACCAAGGGACTGGTTATCAAATCAAGTTGCCCAGCAAAGTACATGCTTAGTCAAGAAGGTCAGGAAGCTGCACGTGAATGTCTCATGAGGTCTGGTATGGAAAACCCCATTGAAAAAACTGCTAATGCCAAAGTGCTTTCTGTTCTGGATGTGGACAATATTTCATCTCAGGAGCTTGCTCATCCTGACTCATCCCCAGAAATGATATTGTTATCCACTAACGTGAGTAGGAAGAAGAAATCATTTGATATTCCACGGCTGTACATTAAGAAGAGTCATCATGTGCCAAAGTCTAGATCAGATGGTTTCAAAGCAAGTTCGAATGTCTTTTCCTTGCCGCCTCTAAGCTTTGGGGAGAGATTTGAAGATGCATATGAAGTGATCTTGATTTTGGATGATCGAGAGCAATTTGCCACTCGGGGATCACGACCTGGGAGAATAATTGAGAATGTTCGTACTCAATTCAAAATCAAAATAGAGGTTAGGAGGTTACCAGTTGGAGATGGAATCTGGATAGCTCGTCATAAACATCTTGAGAGTGAATATGTACTTGATTTTATTGTTGAGAGGAAGAAAGTTGATGATTTACGTTGTTCAATCAGAGACAACCGTTACAGGGATCAGAAACTGAGACTTATGAGGTGTGGACTTAAGAAACTGATATATCTTCTGGAAGGCGATCCAAATTGTTCTGAAGCTGCAGAAAGCATTAAAACAGCCTGTTTCACAACTGAAATTTTGGAGGGATTTGATGTTCAGAGAACCATTGGTTTGGCTGATACACTGAAGAAGTATGTTTATCTTACTCAAGCAATAACTCAATACTACAAATCAGAGTACTCTGAGGAACAACATAGACATGCCGGGATTTGCCCCTCTTTTGATGAATTTATCAAAAGGTGTGAAGAACTGGATAAAATGACAGTCAGTGATGTATTTGCCATTCAGCTCATGCAGGTCCCCCAGGTAACTGAGGAAGTTGCCTTAGCTGTTCTGGATTTGTACCCAACGCTTTTATCTCTTGCCCGTGCCTACTCTCTACTTGAGGGTGACGTGGCTGCACAAGGGGAGATGCTTAGAACACAGAGCAACAATGTTGTCAATGCGGGTGCTAGTAAAAATATTTTTCACTTGGTTTGGGGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

54.85

Weight (kDa)

8.75

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1261
AccII CGCG 1 cut(s) 216
AciI CCGC 2 cut(s) 653, 1421
AclWI GGATC 3 cut(s) 745, 942, 989
AcsI RAATTY 4 cut(s) 103, 161, 1050, 1202
AcuI CTGAAG 3 cut(s) 216, 1029, 1121
AcvI CACGTG 1 cut(s) 389
AfaI GTAC 6 cut(s) 356, 578, 772, 864, 1154, 1319
AfiI CCNNNNNNNGG 2 cut(s) 236, 931
AflII CTTAAG 1 cut(s) 965
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 5 cut(s) 428, 625, 680, 781, 912
AjiI CACGTC 1 cut(s) 1369
AjnI CCWGG 2 cut(s) 745, 1278
AleI CACNNNNGTG 1 cut(s) 536
AloI GAACNNNNNNTCC 2 cut(s) 1053, 1085
Alw26I GTCTC 4 cut(s) 11, 401, 912, 940
AlwI GGATC 3 cut(s) 745, 942, 989
AlwNI CAGNNNCTG 1 cut(s) 943
Ama87I CYCGRG 1 cut(s) 732
ApeKI GCWGC 5 cut(s) 30, 191, 383, 1013, 1373
ApoI RAATTY 4 cut(s) 103, 161, 1050, 1202
AsiGI ACCGGT 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 294, 1273
AsuC2I CCSGG 1 cut(s) 1180
AsuHPI GGTGA 1 cut(s) 1376
AsuII TTCGAA 1 cut(s) 635
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 2 cut(s) 294, 1273
BbrPI CACGTG 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 51, 311
BbvI GCAGC 5 cut(s) 42, 203, 370, 1000, 1360
BccI CCATC 3 cut(s) 285, 611, 812
BceAI ACGGC 1 cut(s) 587
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 2 cut(s) 747, 1280
BcnI CCSGG 1 cut(s) 1180
BcoDI GTCTC 4 cut(s) 11, 401, 912, 940
BfaI CTAG 2 cut(s) 609, 1428
BfmI CTRYAG 2 cut(s) 108, 1014
BfrI CTTAAG 1 cut(s) 965
BfuAI ACCTGC 1 cut(s) 1261
BisI GCNGC 6 cut(s) 31, 192, 384, 653, 1014, 1374
BlsI GCNGC 6 cut(s) 32, 193, 385, 654, 1015, 1375
BmcAI AGTACT 1 cut(s) 1154
Bme1390I CCNGG 3 cut(s) 747, 1180, 1280
Bme18I GGWCC 2 cut(s) 294, 1273
BmeT110I CYCGRG 1 cut(s) 732
BmgBI CACGTC 1 cut(s) 1369
BmgT120I GGNCC 2 cut(s) 294, 1273
BmiI GGNNCC 1 cut(s) 1275
BmrFI CCNGG 3 cut(s) 747, 1180, 1280
BmsI GCATC 3 cut(s) 178, 673, 1377
BpiI GAAGAC 2 cut(s) 51, 311
Bpu10I CCTNAGC 1 cut(s) 1300
Bpu14I TTCGAA 1 cut(s) 635
BpuEI CTTGAG 3 cut(s) 869, 1107, 1379
BpuMI CCSGG 1 cut(s) 1180
Bsa29I ATCGAT 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 318, 569, 746, 1278
BsaWI WCCGGW 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 931
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 3 cut(s) 330, 809, 1230
BseBI CCWGG 2 cut(s) 747, 1280
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 4 cut(s) 318, 569, 746, 1278
BseGI GGATG 5 cut(s) 296, 469, 496, 506, 715
BseLI CCNNNNNNNGG 2 cut(s) 236, 931
BseMII CTCAG 5 cut(s) 110, 497, 935, 1149, 1278
BseNI ACTGG 3 cut(s) 330, 809, 1230
BseXI GCAGC 5 cut(s) 42, 203, 370, 1000, 1360
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 2 cut(s) 369, 1359
Bsh1236I CGCG 1 cut(s) 216
BshTI ACCGGT 1 cut(s) 20
BshVI ATCGAT 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 2 cut(s) 21, 1179
BslFI GGGAC 2 cut(s) 336, 1259
BslI CCNNNNNNNGG 2 cut(s) 236, 931
BsmAI GTCTC 4 cut(s) 11, 401, 912, 940
BsmFI GGGAC 2 cut(s) 336, 1259
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 732
Bsp119I TTCGAA 1 cut(s) 635
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 6 cut(s) 611, 696, 712, 737, 934, 994
BspACI CCGC 2 cut(s) 653, 1421
BspCNI CTCAG 5 cut(s) 109, 496, 936, 1150, 1279
BspDI ATCGAT 1 cut(s) 186
BspFNI CGCG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 1275
BspMAI CTGCAG 1 cut(s) 1018
BspMI ACCTGC 1 cut(s) 1261
BspPI GGATC 3 cut(s) 745, 942, 989
BspT104I TTCGAA 1 cut(s) 635
BspTI CTTAAG 1 cut(s) 965
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 3 cut(s) 330, 809, 1230
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 4 cut(s) 318, 569, 746, 1278
BssMI GATC 6 cut(s) 611, 696, 712, 737, 934, 994
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 747, 1280
Bst4CI ACNGT 2 cut(s) 926, 1240
Bst6I CTCTTC 1 cut(s) 581
BstAFI CTTAAG 1 cut(s) 965
BstAUI TGTACA 1 cut(s) 576
BstBAI YACGTR 1 cut(s) 389
BstBI TTCGAA 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 218, 492
BstDEI CTNAG 9 cut(s) 96, 362, 483, 659, 944, 1158, 1287, 1300, 1391
BstDSI CCRYGG 1 cut(s) 569
BstEII GGTNACC 1 cut(s) 804
BstF5I GGATG 5 cut(s) 296, 469, 496, 506, 715
BstFNI CGCG 1 cut(s) 216
BstKTI GATC 6 cut(s) 614, 699, 715, 740, 937, 997
BstMAI GTCTC 4 cut(s) 11, 401, 912, 940
BstMBI GATC 6 cut(s) 611, 696, 712, 737, 934, 994
BstMWI GCNNNNNNNGC 2 cut(s) 197, 226
BstNI CCWGG 2 cut(s) 747, 1280
BstNSI RCATGY 2 cut(s) 361, 1178
BstPI GGTNACC 1 cut(s) 804
BstSCI CCNGG 3 cut(s) 745, 1178, 1278
BstSFI CTRYAG 2 cut(s) 108, 1014
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 5 cut(s) 42, 203, 370, 1000, 1360
BstV2I GAAGAC 2 cut(s) 51, 311
BstXI CCANNNNNNTGG 2 cut(s) 325, 1087
Bsu15I ATCGAT 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 569
BtrI CACGTC 1 cut(s) 1369
BtsCI GGATG 5 cut(s) 296, 469, 496, 506, 715
BtsIMutI CAGTG 2 cut(s) 1097, 1249
BveI ACCTGC 1 cut(s) 1261
Cac8I GCNNGC 2 cut(s) 218, 492
CaiI CAGNNNCTG 1 cut(s) 943
CciI TCATGA 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 294, 1273
ClaI ATCGAT 1 cut(s) 186
CseI GACGC 2 cut(s) 93, 264
Csp6I GTAC 6 cut(s) 355, 577, 771, 863, 1153, 1318
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 6 cut(s) 301, 358, 400, 596, 1175, 1267
CviQI GTAC 6 cut(s) 355, 577, 771, 863, 1153, 1318
DdeI CTNAG 9 cut(s) 96, 362, 483, 659, 944, 1158, 1287, 1300, 1391
DpnI GATC 6 cut(s) 613, 698, 714, 739, 936, 996
DpnII GATC 6 cut(s) 611, 696, 712, 737, 934, 994
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 294, 1273
Eco57I CTGAAG 3 cut(s) 216, 1029, 1121
Eco72I CACGTG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 732
Eco91I GGTNACC 1 cut(s) 804
EcoO109I RGGNCCY 1 cut(s) 1273
EcoO65I GGTNACC 1 cut(s) 804
EcoRI GAATTC 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 745, 1278
EcoT14I CCWWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 6 cut(s) 304, 361, 403, 599, 1178, 1270
FaqI GGGAC 2 cut(s) 336, 1259
FatI CATG 6 cut(s) 300, 357, 399, 595, 1174, 1266
FauI CCCGC 1 cut(s) 1414
FauNDI CATATG 1 cut(s) 688
Fnu4HI GCNGC 6 cut(s) 31, 192, 384, 653, 1014, 1374
FokI GGATG 5 cut(s) 303, 476, 483, 493, 722
Fsp4HI GCNGC 6 cut(s) 31, 192, 384, 653, 1014, 1374
FspBI CTAG 2 cut(s) 609, 1428
GluI GCNGC 6 cut(s) 31, 192, 384, 653, 1014, 1374
GsaI CCCAGC 1 cut(s) 350
HapII CCGG 2 cut(s) 21, 1179
HgaI GACGC 2 cut(s) 93, 264
Hin1II CATG 6 cut(s) 304, 361, 403, 599, 1178, 1270
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 4 cut(s) 278, 503, 589, 822
HpaII CCGG 2 cut(s) 21, 1179
HphI GGTGA 1 cut(s) 1376
Hpy166II GTNNAC 3 cut(s) 173, 469, 962
Hpy8I GTNNAC 3 cut(s) 173, 469, 962
HpyAV CCTTC 3 cut(s) 229, 365, 983
HpyCH4III ACNGT 2 cut(s) 926, 1240
HpyCH4IV ACGT 4 cut(s) 388, 537, 904, 1368
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 226
HpyF3I CTNAG 9 cut(s) 96, 362, 483, 659, 944, 1158, 1287, 1300, 1391
HpySE526I ACGT 4 cut(s) 388, 537, 904, 1368
Hsp92II CATG 6 cut(s) 304, 361, 403, 599, 1178, 1270
Kzo9I GATC 6 cut(s) 611, 696, 712, 737, 934, 994
LmnI GCTCC 2 cut(s) 178, 487
Lsp1109I GCAGC 5 cut(s) 42, 203, 370, 1000, 1360
LweI GCATC 3 cut(s) 178, 673, 1377
MaeI CTAG 2 cut(s) 609, 1428
MaeII ACGT 4 cut(s) 388, 537, 904, 1368
MaeIII GTNAC 5 cut(s) 313, 804, 926, 1282, 1364
MalI GATC 6 cut(s) 613, 698, 714, 739, 936, 996
MboI GATC 6 cut(s) 611, 696, 712, 737, 934, 994
MfeI CAATTG 1 cut(s) 1459
MlyI GAGTC 3 cut(s) 287, 497, 598
MmeI TCCRAC 1 cut(s) 793
Mph1103I ATGCAT 1 cut(s) 688
MseI TTAA 3 cut(s) 582, 966, 1026
MslI CAYNNNNRTG 3 cut(s) 391, 536, 1173
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 965
MspI CCGG 2 cut(s) 21, 1179
MspR9I CCNGG 3 cut(s) 747, 1180, 1280
MunI CAATTG 1 cut(s) 1459
MvaI CCWGG 2 cut(s) 747, 1280
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 197, 226
NciI CCSGG 1 cut(s) 1180
NdeI CATATG 1 cut(s) 688
NdeII GATC 6 cut(s) 611, 696, 712, 737, 934, 994
NlaIII CATG 6 cut(s) 304, 361, 403, 599, 1178, 1270
NlaIV GGNNCC 1 cut(s) 1275
NmuCI GTSAC 1 cut(s) 1364
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 2 cut(s) 361, 1178
NspV TTCGAA 1 cut(s) 635
OliI CACNNNNGTG 1 cut(s) 536
PagI TCATGA 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 739
PfeI GAWTC 1 cut(s) 822
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 6 cut(s) 32, 193, 385, 654, 1015, 1375
PleI GAGTC 3 cut(s) 286, 497, 597
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
PpsI GAGTC 3 cut(s) 286, 497, 597
Ppu21I YACGTR 1 cut(s) 389
PpuMI RGGWCCY 1 cut(s) 1273
Psp5II RGGWCCY 1 cut(s) 1273
Psp6I CCWGG 2 cut(s) 745, 1278
PspCI CACGTG 1 cut(s) 389
PspEI GGTNACC 1 cut(s) 804
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 2 cut(s) 745, 1278
PspN4I GGNNCC 1 cut(s) 1275
PspPI GGNCC 2 cut(s) 294, 1273
PspPPI RGGWCCY 1 cut(s) 1273
PstI CTGCAG 1 cut(s) 1018
PstNI CAGNNNCTG 1 cut(s) 943
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 6 cut(s) 356, 578, 772, 864, 1154, 1319
RsaNI GTAC 6 cut(s) 355, 577, 771, 863, 1153, 1318
RseI CAYNNNNRTG 3 cut(s) 391, 536, 1173
SaqAI TTAA 3 cut(s) 582, 966, 1026
SatI GCNGC 6 cut(s) 31, 192, 384, 653, 1014, 1374
Sau3AI GATC 6 cut(s) 611, 696, 712, 737, 934, 994
Sau96I GGNCC 2 cut(s) 294, 1273
ScaI AGTACT 1 cut(s) 1154
SchI GAGTC 3 cut(s) 287, 497, 598
ScrFI CCNGG 3 cut(s) 747, 1180, 1280
SfaNI GCATC 3 cut(s) 178, 673, 1377
SfcI CTRYAG 2 cut(s) 108, 1014
SfuI TTCGAA 1 cut(s) 635
SinI GGWCC 2 cut(s) 294, 1273
SmiMI CAYNNNNRTG 3 cut(s) 391, 536, 1173
SmlI CTYRAG 4 cut(s) 848, 965, 1122, 1358
SmoI CTYRAG 4 cut(s) 848, 965, 1122, 1358
SsiI CCGC 2 cut(s) 653, 1421
SspI AATATT 2 cut(s) 475, 1438
SspMI CTAG 2 cut(s) 609, 1428
StyD4I CCNGG 3 cut(s) 745, 1178, 1278
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 926, 1240
TaiI ACGT 4 cut(s) 391, 540, 907, 1371
TaqI TCGA 3 cut(s) 186, 635, 715
TatI WGTACW 4 cut(s) 354, 576, 862, 1152
TauI GCSGC 1 cut(s) 655
TfiI GAWTC 1 cut(s) 822
Tru1I TTAA 3 cut(s) 582, 966, 1026
Tru9I TTAA 3 cut(s) 582, 966, 1026
TscAI CASTG 2 cut(s) 1104, 1249
TseFI GTSAC 1 cut(s) 1364
TseI GCWGC 5 cut(s) 30, 191, 383, 1013, 1373
Tsp45I GTSAC 1 cut(s) 1364
TspDTI ATGAA 5 cut(s) 174, 317, 468, 705, 1215
TspRI CASTG 2 cut(s) 1104, 1249
Vha464I CTTAAG 1 cut(s) 965
VpaK11BI GGWCC 2 cut(s) 294, 1273
XapI RAATTY 4 cut(s) 103, 161, 1050, 1202
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 2 cut(s) 361, 1178
XspI CTAG 2 cut(s) 609, 1428
ZrmI AGTACT 1 cut(s) 1154
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.