Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8493915.1

Orthogroup ID

OG0002805

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2174

Gene Structure 2174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8493915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 529 bp

atgcaagggtactttgacaccggttcaggcagttctgaaccagaagatgtaactaaaaagggtaagagaaccaaaggaagcaaacgctatgttccacaaaagaattctgtagcatatgctttactgatcacactttacaggggaactgaaagtgggaatgaatttatgcgtaaacaggagctcattgatgcagctgaagcaagtggactatctcgtgttccaattatgccagagaagggaaagggaataccggtacacctgggaaattctacaagggaatggtatagtggttggtcctgcatgaagacattgataaccaagggactggttgtgaaatcaagttgcccagcaaagtacatgcttactcaagaaggtaaggaggctgctcgtgaatgtctcgtgaggtctggtttggcggatcctgtagaaataatttctaatgccagggagttgtctctcggggatgtggacatttcacatcaggaactttctagtcctgactcggccacagatatgacattgttatcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

ERCC4

Protein Analysis

176

Amino Acids

19.18

Weight (kDa)

7.67

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30870
fragaria_vesca	FvH4_7g02220 FvH4_7g02220 FvH4_7g02220 FvH4_7g02220 FvH4_7g02220
malus_domestica	MD02G1296200.v1.1 MD07G1077800.v1.1
prunus_persica	Prupe.2G028500_v2.0.a1 Prupe.2G028500_v2.0.a1 Prupe.2G028500_v2.0.a1 Prupe.2G032400_v2.0.a1 Prupe.2G099800_v2.0.a1 Prupe.7G020900_v2.0.a1 Prupe.7G020900_v2.0.a1 Prupe.7G020900_v2.0.a1
pyrus_communis	pycom02g24920 pycom07g06150
rosa_chinensis	RchiOBHm_Chr1g0319541 RchiOBHm_Chr3g0488831
rosa_laevigata	RLG00000013988 RLG00000022919 RLG00000030474
rosa_multiflora	Rmu_co8493915.1_g000001 Rmu_sc0001208.1_g000040
rosa_roxburghii	Rroxscaffold_4G00328300 Rroxscaffold_6G00393830
rosa_rugosa	Rorug01G0028100 Rorug03G0241800
rosa_samantha	Rh1AG040200 Rh1BG037300 Rh1CG041200 Rh1DG028700 Rh3AG289900 Rh3BG327000 Rh3CG324400 Rh3DG322900
rosa_wichuraiana	Rw1G003310 Rw3G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	2 cut(s)	413, 426
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	3 cut(s)	103, 161, 265
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	3 cut(s)	11, 255, 356
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgeI	ACCGGT	2 cut(s)	20, 250
AjnI	CCWGG	2 cut(s)	258, 443
AluBI	AGCT	2 cut(s)	181, 194
AluI	AGCT	2 cut(s)	181, 194
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	401, 459
AlwI	GGATC	2 cut(s)	413, 426
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	2 cut(s)	191, 383
ApoI	RAATTY	3 cut(s)	103, 161, 265
AsiGI	ACCGGT	2 cut(s)	20, 250
AspS9I	GGNCC	1 cut(s)	294
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	183
BauI	CACGAG	3 cut(s)	213, 387, 398
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	203, 370
BciT130I	CCWGG	2 cut(s)	260, 445
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	401, 459
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	2 cut(s)	108, 423
BisI	GCNGC	2 cut(s)	192, 384
BlsI	GCNGC	2 cut(s)	193, 385
Bme1390I	CCNGG	2 cut(s)	260, 445
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	2 cut(s)	260, 445
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	259, 318, 444
BsaWI	WCCGGW	2 cut(s)	20, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	2 cut(s)	20, 250
Bse1I	ACTGG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	260, 445
BseDI	CCNNGG	3 cut(s)	259, 318, 444
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	203, 370
BseYI	CCCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	506
BshTI	ACCGGT	2 cut(s)	20, 250
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	2 cut(s)	21, 251
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	401, 459
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	506
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	126, 418
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	1 cut(s)	506
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	413, 426
BsrFI	RCCGGY	2 cut(s)	20, 250
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	2 cut(s)	20, 250
BssECI	CCNNGG	3 cut(s)	259, 318, 444
BssMI	GATC	2 cut(s)	126, 418
BssSI	CACGAG	3 cut(s)	213, 387, 398
BssT1I	CCWWGG	1 cut(s)	318
Bst2BI	CACGAG	3 cut(s)	213, 387, 398
Bst2UI	CCWGG	2 cut(s)	260, 445
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	2 cut(s)	129, 421
BstMAI	GTCTC	2 cut(s)	401, 459
BstMBI	GATC	2 cut(s)	126, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	260, 445
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	2 cut(s)	258, 443
BstSFI	CTRYAG	2 cut(s)	108, 423
BstV1I	GCAGC	2 cut(s)	203, 370
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	469
Cfr10I	RCCGGY	2 cut(s)	20, 250
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	10, 254, 355
CspAI	ACCGGT	2 cut(s)	20, 250
CviAII	CATG	2 cut(s)	301, 358
CviJI	RGCY	4 cut(s)	181, 194, 383, 506
CviKI_1	RGCY	4 cut(s)	181, 194, 383, 506
CviQI	GTAC	3 cut(s)	10, 254, 355
DpnI	GATC	2 cut(s)	128, 420
DpnII	GATC	2 cut(s)	126, 418
EaeI	YGGCCR	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	431
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	258, 443
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	304, 361
FaiI	YATR	9 cut(s)	90, 115, 117, 167, 227, 285, 302, 359, 515
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	2 cut(s)	300, 357
FauNDI	CATATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	192, 384
FokI	GGATG	1 cut(s)	476
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	192, 384
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	2 cut(s)	192, 384
GsaI	CCCAGC	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	2 cut(s)	21, 251
Hin1II	CATG	2 cut(s)	304, 361
HinfI	GANTC	1 cut(s)	500
HpaII	CCGG	2 cut(s)	21, 251
Hpy166II	GTNNAC	4 cut(s)	173, 206, 256, 469
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	5 cut(s)	368, 389, 400, 482, 497
Hpy8I	GTNNAC	4 cut(s)	173, 206, 256, 469
HpyAV	CCTTC	2 cut(s)	229, 365
HpyCH4V	TGCA	3 cut(s)	4, 191, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	304, 361
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	126, 418
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	2 cut(s)	203, 370
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	128, 420
MboI	GATC	2 cut(s)	126, 418
MboII	GAAGA	2 cut(s)	56, 316
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	5 cut(s)	103, 161, 222, 265, 432
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	2 cut(s)	373, 396
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	21, 251
MspR9I	CCNGG	2 cut(s)	260, 445
MvaI	CCWGG	2 cut(s)	260, 445
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	2 cut(s)	126, 418
NlaIII	CATG	2 cut(s)	304, 361
NlaIV	GGNNCC	1 cut(s)	420
NmeAIII	GCCGAG	1 cut(s)	482
NspI	RCATGY	1 cut(s)	361
PinAI	ACCGGT	2 cut(s)	20, 250
PkrI	GCNGC	2 cut(s)	193, 385
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	258, 443
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	2 cut(s)	258, 443
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	3 cut(s)	11, 255, 356
RsaNI	GTAC	3 cut(s)	10, 254, 355
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	183
SatI	GCNGC	2 cut(s)	192, 384
Sau3AI	GATC	2 cut(s)	126, 418
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	260, 445
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	183, 196, 261, 376, 407
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	2 cut(s)	108, 423
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	5 cut(s)	103, 161, 222, 265, 432
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	492
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	258, 443
StyI	CCWWGG	1 cut(s)	318
TasI	AATT	5 cut(s)	103, 161, 222, 265, 432
TatI	WGTACW	1 cut(s)	354
TseI	GCWGC	2 cut(s)	191, 383
TspDTI	ATGAA	2 cut(s)	174, 317
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	3 cut(s)	103, 161, 265
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.