Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001208.1

Orthogroup ID

OG0002805

Physical Location & Seq

Genomic Coordinates Reverse (-)

161830 .. 163264

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001208.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgagggatccaccggcgtttcgtacctcgagtggatcagccaagagaaccaaatcaaccaaacgctacgttccgcagaagaattccgtggcatatgctttgttgatcacgctttacaggggaaccgaaaatggagatgaatttatgcgtaaacaggagcttattgatgcagctgaagctagtggactttctcgtgtgccgattatgccggagagggggaagggaaagcctacaactctcggcaattctgccaaggaatggtacatgcttactgaagaaggtcaggaagttgcccgtgaatgtctcatgaggtctggtttggtggatcctgtggaaaaagtttctaatgtcaaagggttgtctgtcgtggatgtgaatgtatcagaacagggcctttctcatcctgagtcagtgacagatatgacattgttgtccagtaattcaagtagtgaggagaacttaattgatatgccatgggaatgtcttgacaaggtatatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

ERCC4

Protein Analysis

167

Amino Acids

18.48

Weight (kDa)

5.34

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30870
fragaria_vesca	FvH4_7g02220 FvH4_7g02220 FvH4_7g02220 FvH4_7g02220 FvH4_7g02220
malus_domestica	MD02G1296200.v1.1 MD07G1077800.v1.1
prunus_persica	Prupe.2G028500_v2.0.a1 Prupe.2G028500_v2.0.a1 Prupe.2G028500_v2.0.a1 Prupe.2G032400_v2.0.a1 Prupe.2G099800_v2.0.a1 Prupe.7G020900_v2.0.a1 Prupe.7G020900_v2.0.a1 Prupe.7G020900_v2.0.a1
pyrus_communis	pycom02g24920 pycom07g06150
rosa_chinensis	RchiOBHm_Chr1g0319541 RchiOBHm_Chr3g0488831
rosa_laevigata	RLG00000013988 RLG00000022919 RLG00000030474
rosa_multiflora	Rmu_co8493915.1_g000001 Rmu_sc0001208.1_g000040
rosa_roxburghii	Rroxscaffold_4G00328300 Rroxscaffold_6G00393830
rosa_rugosa	Rorug01G0028100 Rorug03G0241800
rosa_samantha	Rh1AG040200 Rh1BG037300 Rh1CG041200 Rh1DG028700 Rh3AG289900 Rh3BG327000 Rh3CG324400 Rh3DG322900
rosa_wichuraiana	Rw1G003310 Rw3G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	258
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	5 cut(s)	2, 15, 43, 320, 333
AcsI	RAATTY	2 cut(s)	82, 140
AcuI	CTGAAG	2 cut(s)	195, 294
AfaI	GTAC	2 cut(s)	25, 263
AfiI	CCNNNNNNNGG	2 cut(s)	215, 258
AgsI	TTSAA	1 cut(s)	444
AluBI	AGCT	3 cut(s)	160, 173, 179
AluI	AGCT	3 cut(s)	160, 173, 179
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	5 cut(s)	2, 15, 43, 320, 333
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	82, 140
AspS9I	GGNCC	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	28
BamHI	GGATCC	2 cut(s)	7, 325
BauI	CACGAG	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	182
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	3 cut(s)	9, 124, 327
BmsI	GCATC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	87, 252, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 258
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	87, 252, 473
BseGI	GGATG	2 cut(s)	376, 400
BseLI	CCNNNNNNNGG	2 cut(s)	215, 258
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	14, 209
BslI	CCNNNNNNNGG	2 cut(s)	215, 258
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	7, 35, 105, 325
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	9, 124, 327
BspPI	GGATC	5 cut(s)	2, 15, 43, 320, 333
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	87, 252, 473
BssMI	GATC	4 cut(s)	7, 35, 105, 325
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	252, 473
Bst2BI	CACGAG	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	2 cut(s)	87, 473
BstF5I	GGATG	2 cut(s)	376, 400
BstKTI	GATC	4 cut(s)	10, 38, 108, 328
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	4 cut(s)	7, 35, 105, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 205
BstNSI	RCATGY	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	7, 325
BstYI	RGATCY	2 cut(s)	7, 325
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	2 cut(s)	87, 473
BtsCI	GGATG	2 cut(s)	376, 400
BtsIMutI	CAGTG	1 cut(s)	417
CciI	TCATGA	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	24, 262
CviAII	CATG	3 cut(s)	265, 307, 474
CviJI	RGCY	6 cut(s)	41, 160, 173, 179, 229, 393
CviKI_1	RGCY	6 cut(s)	41, 160, 173, 179, 229, 393
CviQI	GTAC	2 cut(s)	24, 262
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	4 cut(s)	9, 37, 107, 327
DpnII	GATC	4 cut(s)	7, 35, 105, 325
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	252, 473
Eco57I	CTGAAG	2 cut(s)	195, 294
Eco88I	CYCGRG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	252, 473
ErhI	CCWWGG	2 cut(s)	252, 473
FaeI	CATG	3 cut(s)	268, 310, 477
FatI	CATG	3 cut(s)	264, 306, 473
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	383, 387
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	2 cut(s)	14, 209
Hin1II	CATG	3 cut(s)	268, 310, 477
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	2 cut(s)	14, 209
Hpy166II	GTNNAC	2 cut(s)	152, 185
Hpy188I	TCNGA	2 cut(s)	385, 503
Hpy188III	TCNNGA	4 cut(s)	284, 307, 404, 485
Hpy8I	GTNNAC	2 cut(s)	152, 185
HpyAV	CCTTC	2 cut(s)	214, 272
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 205
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	268, 310, 477
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	7, 35, 105, 325
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	4 cut(s)	9, 37, 107, 327
MboI	GATC	4 cut(s)	7, 35, 105, 325
MboII	GAAGA	2 cut(s)	91, 287
MflI	RGATCY	2 cut(s)	7, 325
MluCI	AATT	5 cut(s)	82, 140, 244, 439, 462
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	4 cut(s)	37, 207, 303, 445
MseI	TTAA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	478
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	14, 209
MwoI	GCNNNNNNNGC	2 cut(s)	176, 205
NcoI	CCATGG	1 cut(s)	473
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	4 cut(s)	7, 35, 105, 325
NlaIII	CATG	3 cut(s)	268, 310, 477
NlaIV	GGNNCC	3 cut(s)	9, 124, 327
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	28
PagI	TCATGA	1 cut(s)	306
PflMI	CCANNNNNTGG	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	9, 124, 327
PspPI	GGNCC	1 cut(s)	391
PspXI	VCTCGAGB	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	7, 325
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	25, 263
RsaNI	GTAC	2 cut(s)	24, 262
RseI	CAYNNNNRTG	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	7, 35, 105, 325
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	416
SetI	ASST	8 cut(s)	29, 72, 162, 175, 181, 283, 314, 495
SfaNI	GCATC	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	28
SgrAI	CRCCGGYG	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	5 cut(s)	82, 140, 244, 439, 462
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	2 cut(s)	252, 473
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	82, 140, 244, 439, 462
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	258
XapI	RAATTY	2 cut(s)	82, 140
XceI	RCATGY	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	28
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.