Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Reverse (-)

8360632 .. 8361519

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G047300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAGCTCATCAAAATCAGCTCCAAAAGTCTCAGCCCGAAACGCCTCTTCCGGTCCAAGAAGGACCGATCCGCGGTGTCCCGCCGCTCCTCCGACCCACTATCGTTTGAGTCCGGAACGGCGTCGTCGTCGTCGTCGTCATCCTCGTCCTCGGACTCACTCCACAAGCCCGGAACCGGAGCCGAAGCTGGTGGTATCGGGACGCCGACGAGCGTTTTGCTCGAAAGATCGGGCGACTGGTCCGATTTCTCGACCGATCTGCAGCTCGACATGGCTCAGGCGTTTAAGCTTATAGACCGAGACAACGACGGAGTGGTCTCGAGAAAAGAGCTAGAGGCTCTGCTGAGCCGGCTTGGAGCCGACCCGCCGAGCCAAGAAGAGGTGATGTTGATGCTGAGCGAGGTGGACCGAGAAGGCAACGGTTCGATAAGCCTCGAGGCACTGTTGAGCCGGGTCGGCCCGGTTTGCGGTCCGGCCGCGGACTCGGAGCTGCGCGATGCTTTCGAGGTCTTTGACTCGGATCACGACGGCAAAATATCGGCCGAGGAGCTTTTGAACGTTTTTACGGCGATAGGAGATGACCGGTGCACCTTAGAGGACTGCCGGCGCATGATAGCGGGGGTAGATAAGAACGGGGACGGGTTCGTGTGCTTCGAGGACTTTGCTCGTATGATGGAACTGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

230

Amino Acids

24.75

Weight (kDa)

4.72

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AbsI	CCTCGAGG	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	3 cut(s)	74, 479, 495
AccIII	TCCGGA	1 cut(s)	113
AciI	CCGC	9 cut(s)	72, 74, 82, 85, 365, 468, 477, 479, 617
AclI	AACGTT	1 cut(s)	558
AclWI	GGATC	2 cut(s)	63, 528
AcoI	YGGCCR	2 cut(s)	474, 540
AcyI	GRCGYC	2 cut(s)	122, 203
AfiI	CCNNNNNNNGG	4 cut(s)	73, 176, 379, 467
AgeI	ACCGGT	1 cut(s)	582
AgsI	TTSAA	1 cut(s)	556
AluBI	AGCT	8 cut(s)	7, 21, 188, 265, 289, 331, 490, 550
AluI	AGCT	8 cut(s)	7, 21, 188, 265, 289, 331, 490, 550
Alw21I	GWGCWC	1 cut(s)	590
Alw26I	GTCTC	3 cut(s)	35, 294, 322
Alw44I	GTGCAC	1 cut(s)	586
AlwI	GGATC	2 cut(s)	63, 528
Ama87I	CYCGRG	2 cut(s)	319, 434
Aor13HI	TCCGGA	1 cut(s)	113
AoxI	GGCC	3 cut(s)	457, 474, 540
ApaLI	GTGCAC	1 cut(s)	586
ApeKI	GCWGC	2 cut(s)	262, 490
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
AsiGI	ACCGGT	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	495, 609
AspS9I	GGNCC	6 cut(s)	54, 64, 240, 406, 458, 470
AsuC2I	CCSGG	3 cut(s)	171, 452, 461
AsuHPI	GGTGA	1 cut(s)	394
AvaI	CYCGRG	2 cut(s)	319, 434
AvaII	GGWCC	5 cut(s)	54, 64, 240, 406, 470
BaeGI	GKGCMC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	590
BbvI	GCAGC	2 cut(s)	274, 477
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	3 cut(s)	135, 544, 582
BcgI	CGANNNNNNTGC	6 cut(s)	199, 233, 241, 275, 644, 678
BcnI	CCSGG	3 cut(s)	171, 452, 461
BcoDI	GTCTC	3 cut(s)	35, 294, 322
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	260, 680
BglI	GCCNNNNNGGC	1 cut(s)	456
BisI	GCNGC	4 cut(s)	85, 263, 477, 491
BlpI	GCTNAGC	2 cut(s)	344, 395
BlsI	GCNGC	4 cut(s)	86, 264, 478, 492
Bme1390I	CCNGG	3 cut(s)	171, 452, 461
Bme18I	GGWCC	5 cut(s)	54, 64, 240, 406, 470
BmeT110I	CYCGRG	2 cut(s)	319, 434
BmgT120I	GGNCC	6 cut(s)	54, 64, 240, 406, 458, 470
BmiI	GGNNCC	3 cut(s)	175, 181, 358
BmrFI	CCNGG	3 cut(s)	171, 452, 461
BmsI	GCATC	2 cut(s)	381, 487
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	2 cut(s)	344, 395
BpuMI	CCSGG	3 cut(s)	171, 452, 461
BsaHI	GRCGYC	2 cut(s)	122, 203
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	4 cut(s)	72, 150, 477, 543
BsaWI	WCCGGW	4 cut(s)	51, 113, 176, 582
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 176, 379, 467
Bse118I	RCCGGY	3 cut(s)	348, 582, 603
Bse1I	ACTGG	1 cut(s)	242
BseAI	TCCGGA	1 cut(s)	113
BseDI	CCNNGG	4 cut(s)	72, 150, 477, 543
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	73, 176, 379, 467
BseMII	CTCAG	4 cut(s)	46, 290, 335, 386
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	79, 560
BseSI	GKGCMC	1 cut(s)	590
BseX3I	CGGCCG	2 cut(s)	474, 540
BseXI	GCAGC	2 cut(s)	274, 477
Bsh1236I	CGCG	3 cut(s)	74, 479, 495
Bsh1285I	CGRYCG	3 cut(s)	255, 477, 543
BshFI	GGCC	3 cut(s)	459, 476, 542
BshTI	ACCGGT	1 cut(s)	582
BsiEI	CGRYCG	3 cut(s)	255, 477, 543
BsiHKAI	GWGCWC	1 cut(s)	590
BsiHKCI	CYCGRG	2 cut(s)	319, 434
BslFI	GGGAC	3 cut(s)	64, 214, 650
BslI	CCNNNNNNNGG	4 cut(s)	73, 176, 379, 467
BsmAI	GTCTC	3 cut(s)	35, 294, 322
BsmFI	GGGAC	3 cut(s)	64, 214, 650
BsnI	GGCC	3 cut(s)	459, 476, 542
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	2 cut(s)	319, 434
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp13I	TCCGGA	1 cut(s)	113
Bsp143I	GATC	4 cut(s)	68, 227, 256, 520
Bsp1720I	GCTNAGC	2 cut(s)	344, 395
BspACI	CCGC	9 cut(s)	72, 74, 82, 85, 365, 468, 477, 479, 617
BspANI	GGCC	3 cut(s)	459, 476, 542
BspCNI	CTCAG	4 cut(s)	45, 289, 336, 387
BspEI	TCCGGA	1 cut(s)	113
BspFNI	CGCG	3 cut(s)	74, 479, 495
BspLI	GGNNCC	3 cut(s)	175, 181, 358
BspMAI	CTGCAG	2 cut(s)	264, 684
BspPI	GGATC	2 cut(s)	63, 528
BspTNI	GGTCTC	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	87
BsrFI	RCCGGY	3 cut(s)	348, 582, 603
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	3 cut(s)	348, 582, 603
BssECI	CCNNGG	4 cut(s)	72, 150, 477, 543
BssMI	GATC	4 cut(s)	68, 227, 256, 520
BssNI	GRCGYC	2 cut(s)	122, 203
Bst4CI	ACNGT	2 cut(s)	422, 444
Bst6I	CTCTTC	2 cut(s)	53, 372
BstACI	GRCGYC	2 cut(s)	122, 203
BstC8I	GCNNGC	2 cut(s)	350, 605
BstDEI	CTNAG	5 cut(s)	32, 276, 344, 395, 592
BstDSI	CCRYGG	2 cut(s)	72, 477
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	3 cut(s)	74, 479, 495
BstHHI	GCGC	2 cut(s)	495, 609
BstKTI	GATC	4 cut(s)	71, 230, 259, 523
BstMAI	GTCTC	3 cut(s)	35, 294, 322
BstMBI	GATC	4 cut(s)	68, 227, 256, 520
BstMCI	CGRYCG	3 cut(s)	255, 477, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 349, 456, 465
BstSCI	CCNGG	3 cut(s)	169, 450, 459
BstSFI	CTRYAG	2 cut(s)	260, 680
BstSLI	GKGCMC	1 cut(s)	590
BstUI	CGCG	3 cut(s)	74, 479, 495
BstV1I	GCAGC	2 cut(s)	274, 477
BstZI	CGGCCG	2 cut(s)	474, 540
BsuRI	GGCC	3 cut(s)	459, 476, 542
BtgI	CCRYGG	2 cut(s)	72, 477
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	350, 605
CfoI	GCGC	2 cut(s)	495, 609
Cfr10I	RCCGGY	3 cut(s)	348, 582, 603
Cfr13I	GGNCC	6 cut(s)	54, 64, 240, 406, 458, 470
Cfr42I	CCGCGG	2 cut(s)	75, 480
CpoI	CGGWCCG	1 cut(s)	470
CseI	GACGC	2 cut(s)	111, 211
CspAI	ACCGGT	1 cut(s)	582
CspI	CGGWCCG	1 cut(s)	470
CviAII	CATG	2 cut(s)	271, 610
DdeI	CTNAG	5 cut(s)	32, 276, 344, 395, 592
DpnI	GATC	4 cut(s)	70, 229, 258, 522
DpnII	GATC	4 cut(s)	68, 227, 256, 520
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	474, 540
EagI	CGGCCG	2 cut(s)	474, 540
Eam1104I	CTCTTC	2 cut(s)	53, 372
EarI	CTCTTC	2 cut(s)	53, 372
EclXI	CGGCCG	2 cut(s)	474, 540
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	5 cut(s)	54, 64, 240, 406, 470
Eco52I	CGGCCG	2 cut(s)	474, 540
Eco88I	CYCGRG	2 cut(s)	319, 434
FaeI	CATG	2 cut(s)	274, 613
FaiI	YATR	4 cut(s)	272, 293, 611, 671
FaqI	GGGAC	3 cut(s)	64, 214, 650
FatI	CATG	2 cut(s)	270, 609
FauI	CCCGC	3 cut(s)	89, 372, 610
Fnu4HI	GCNGC	4 cut(s)	85, 263, 477, 491
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	4 cut(s)	85, 263, 477, 491
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	2 cut(s)	494, 608
GluI	GCNGC	4 cut(s)	85, 263, 477, 491
HaeIII	GGCC	3 cut(s)	459, 476, 542
HgaI	GACGC	2 cut(s)	111, 211
HhaI	GCGC	2 cut(s)	495, 609
Hin1I	GRCGYC	2 cut(s)	122, 203
Hin1II	CATG	2 cut(s)	274, 613
Hin6I	GCGC	2 cut(s)	493, 607
HinP1I	GCGC	2 cut(s)	493, 607
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	110, 155, 482, 515
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	406, 588
Hpy188I	TCNGA	5 cut(s)	94, 154, 244, 487, 520
Hpy188III	TCNNGA	6 cut(s)	114, 199, 250, 319, 321, 524
Hpy8I	GTNNAC	2 cut(s)	406, 588
Hpy99I	CGWCG	8 cut(s)	127, 130, 133, 136, 139, 211, 311, 530
HpyAV	CCTTC	2 cut(s)	55, 407
HpyCH4III	ACNGT	2 cut(s)	422, 444
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	262, 588, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 349, 456, 465
HpyF3I	CTNAG	5 cut(s)	32, 276, 344, 395, 592
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	2 cut(s)	122, 203
Hsp92II	CATG	2 cut(s)	274, 613
HspAI	GCGC	2 cut(s)	493, 607
Kpn2I	TCCGGA	1 cut(s)	113
KroI	GCCGGC	2 cut(s)	348, 603
KroNI	GCCGGC	2 cut(s)	350, 605
KspI	CCGCGG	2 cut(s)	75, 480
Kzo9I	GATC	4 cut(s)	68, 227, 256, 520
LmnI	GCTCC	6 cut(s)	26, 92, 179, 356, 487, 547
Lsp1109I	GCAGC	2 cut(s)	274, 477
LweI	GCATC	2 cut(s)	381, 487
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	558
MalI	GATC	4 cut(s)	70, 229, 258, 522
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	4 cut(s)	68, 227, 256, 520
MboII	GAAGA	2 cut(s)	40, 389
MhlI	GDGCHC	1 cut(s)	590
MlyI	GAGTC	4 cut(s)	119, 149, 476, 509
MmeI	TCCRAC	1 cut(s)	117
MroI	TCCGGA	1 cut(s)	113
MroNI	GCCGGC	2 cut(s)	348, 603
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	2 cut(s)	74, 479
MspR9I	CCNGG	3 cut(s)	171, 452, 461
MvnI	CGCG	3 cut(s)	74, 479, 495
MwoI	GCNNNNNNNGC	4 cut(s)	42, 349, 456, 465
NaeI	GCCGGC	2 cut(s)	350, 605
NciI	CCSGG	3 cut(s)	171, 452, 461
NdeII	GATC	4 cut(s)	68, 227, 256, 520
NgoMIV	GCCGGC	2 cut(s)	348, 603
NlaIII	CATG	2 cut(s)	274, 613
NlaIV	GGNNCC	3 cut(s)	175, 181, 358
NmeAIII	GCCGAG	2 cut(s)	393, 568
PaeR7I	CTCGAG	2 cut(s)	319, 434
PcsI	WCGNNNNNNNCGW	5 cut(s)	125, 131, 134, 143, 651
PdiI	GCCGGC	2 cut(s)	350, 605
PinAI	ACCGGT	1 cut(s)	582
PkrI	GCNGC	4 cut(s)	86, 264, 478, 492
PleI	GAGTC	4 cut(s)	118, 149, 476, 509
PpsI	GAGTC	4 cut(s)	118, 149, 476, 509
Psp1406I	AACGTT	1 cut(s)	558
PspN4I	GGNNCC	3 cut(s)	175, 181, 358
PspPI	GGNCC	6 cut(s)	54, 64, 240, 406, 458, 470
PspXI	VCTCGAGB	1 cut(s)	434
PstI	CTGCAG	2 cut(s)	264, 684
Rsr2I	CGGWCCG	1 cut(s)	470
RsrII	CGGWCCG	1 cut(s)	470
SacII	CCGCGG	2 cut(s)	75, 480
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	85, 263, 477, 491
Sau3AI	GATC	4 cut(s)	68, 227, 256, 520
Sau96I	GGNCC	6 cut(s)	54, 64, 240, 406, 458, 470
SchI	GAGTC	4 cut(s)	119, 149, 476, 509
ScrFI	CCNGG	3 cut(s)	171, 452, 461
SduI	GDGCHC	1 cut(s)	590
SfaNI	GCATC	2 cut(s)	381, 487
SfcI	CTRYAG	2 cut(s)	260, 680
Sfr274I	CTCGAG	2 cut(s)	319, 434
Sfr303I	CCGCGG	2 cut(s)	75, 480
SgrBI	CCGCGG	2 cut(s)	75, 480
SinI	GGWCC	5 cut(s)	54, 64, 240, 406, 470
SlaI	CTCGAG	2 cut(s)	319, 434
SmlI	CTYRAG	2 cut(s)	319, 434
SmoI	CTYRAG	2 cut(s)	319, 434
SsiI	CCGC	9 cut(s)	72, 74, 82, 85, 365, 468, 477, 479, 617
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	169, 450, 459
TaaI	ACNGT	2 cut(s)	422, 444
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	8 cut(s)	222, 251, 267, 320, 425, 435, 504, 654
TaqII	GACCGA	4 cut(s)	81, 269, 312, 423
TauI	GCSGC	2 cut(s)	87, 479
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	2 cut(s)	262, 490
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	447
VneI	GTGCAC	1 cut(s)	586
VpaK11BI	GGWCC	5 cut(s)	54, 64, 240, 406, 470
XhoI	CTCGAG	2 cut(s)	319, 434
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.