Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Reverse (-)

26462065 .. 26462933

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGATAGGGAAGTCTCCAGTTATCAGCAGGAATTATCTTGATCTGTTATGGTTCCAAGATTCAGTTACAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACATTGGAAACGGGAAGAGTCACAAAGGAAATGTGAGAGAGGATCAGGTGAAGAAGGACAGGAAATCAGGATTGGGCATGAATGGATTGCCCAAGAAAGGTGGCCATGGCGGCAAGTTCACCTGGGCCGATGATCTGGGCTACTCTACAGCCGAGATGGGTTTTCAGAAGGAAGTCATCGACGCCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

9.82

Isoelectric Point (pI)

23.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	4 cut(s)	162, 296, 309, 322
AcoI	YGGCCR	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	233
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	4 cut(s)	162, 296, 309, 322
AoxI	GGCC	2 cut(s)	214, 237
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	3 cut(s)	16, 172, 223
BalI	TGGCCA	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	321
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	56, 303
BmrFI	CCNGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	217, 234, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	3 cut(s)	217, 234, 297
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	216, 239
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	216, 239
Bsp143I	GATC	5 cut(s)	43, 154, 244, 301, 327
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	2 cut(s)	216, 239
BspLI	GGNNCC	2 cut(s)	56, 303
BspPI	GGATC	4 cut(s)	162, 296, 309, 322
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	217, 234, 297
BssMI	GATC	5 cut(s)	43, 154, 244, 301, 327
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	217, 297
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	217
BstKTI	GATC	5 cut(s)	46, 157, 247, 304, 330
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	5 cut(s)	43, 154, 244, 301, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	301, 327
BstYI	RGATCY	2 cut(s)	301, 327
BsuRI	GGCC	2 cut(s)	216, 239
BtgI	CCRYGG	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	2 cut(s)	190, 218
CviJI	RGCY	4 cut(s)	216, 239, 252, 263
CviKI_1	RGCY	4 cut(s)	216, 239, 252, 263
DpnI	GATC	5 cut(s)	45, 156, 246, 303, 329
DpnII	GATC	5 cut(s)	43, 154, 244, 301, 327
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	217, 297
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	217, 297
ErhI	CCWWGG	2 cut(s)	217, 297
FaeI	CATG	2 cut(s)	193, 221
FaiI	YATR	3 cut(s)	52, 191, 219
FatI	CATG	2 cut(s)	189, 217
Fnu4HI	GCNGC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	216, 239
HgaI	GACGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	193, 221
HinfI	GANTC	2 cut(s)	62, 130
HphI	GGTGA	3 cut(s)	16, 172, 223
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	279, 341
Hpy188III	TCNNGA	3 cut(s)	41, 180, 325
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	160, 274
HpyCH4III	ACNGT	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	193, 221
Kzo9I	GATC	5 cut(s)	43, 154, 244, 301, 327
LpnPI	CCDG	8 cut(s)	16, 33, 143, 157, 165, 220, 233, 247
MaeIII	GTNAC	2 cut(s)	67, 131
MalI	GATC	5 cut(s)	45, 156, 246, 303, 329
MboI	GATC	5 cut(s)	43, 154, 244, 301, 327
MflI	RGATCY	2 cut(s)	301, 327
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	5 cut(s)	43, 154, 244, 301, 327
NlaIII	CATG	2 cut(s)	193, 221
NlaIV	GGNNCC	2 cut(s)	56, 303
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	56, 303
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	301, 327
PsyI	GACNNNGTC	1 cut(s)	320
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	5 cut(s)	43, 154, 244, 301, 327
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	3 cut(s)	162, 214, 236
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	217, 297
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	291, 324
TasI	AATT	1 cut(s)	34
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	206
Tth111I	GACNNNGTC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.