Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Reverse (-)

51565981 .. 51566589

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAGGACCGCTCCGTCGTTTCCCGCTCCGACCCACCGTCCTTTGGCTCCGGAACGGCGTCGTCTTCCTCCTCGGATCCCCTGCCGTCCGACCACAAGCCCGGACCCGGCGGCATGGGGACTCCCACGAGCGTTCTGCCGGAAATATCCGGGGACTGGTCGGATTTCTCCGCCGACACTCATCTCGACGTGGCCCAGGCGTTTAAGCTGATCGACAGAGACAACGACGGAGTGGTGTCGAGAAAAGAGCTGGAGGCTCTGCTGAAGCGGCTGGGGGCGGAGCCGCCGAGCCAGGAAGAGGTGGCGATGATGTTGAGCGAGGTGGACCGGGACGGCGACGGCTGCATACCCCTGGATGCCTTGTTGCACCGGTTCGGACCGGCTTGCGAACCGCCGGGCGACTCGGAGCTGCGGGAGGCTTTTGAGGTGTTCGACGCGGATCACGACGGCAAAATATCGGCGGAGGAGCTGTTCAGCGTGTTCACGGCGATAGGGGACGACCGGTGCACGTTAGAGGACTGCCGGCGCATGATAGCCGAGGTTGATAAGAACGGGGATGGGTTCGTCTGCTTTGAGGACTTTGCAGTTATGATGGACCTGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

202

Amino Acids

21.86

Weight (kDa)

4.29

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	64 - 91	3.6e-06	EF hand domain
EF-hand_7	PF13499	65 - 119	2e-11	EF-hand domain pair
EF-hand_6	PF13405	65 - 92	8.4e-07	EF-hand domain
EF-hand_7	PF13499	135 - 197	1.4e-12	EF-hand domain pair
EF-hand_1	PF00036	136 - 163	5.9e-08	EF hand domain
EF-hand_6	PF13405	136 - 165	8.4e-08	EF-hand domain
EF-hand_5	PF13202	137 - 157	8.1e-07	EF hand
EF-hand_1	PF00036	173 - 198	3.2e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AccBSI	CCGCTC	2 cut(s)	12, 27
AccII	CGCG	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	50
AclWI	GGATC	3 cut(s)	71, 84, 447
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	59
AfiI	CCNNNNNNNGG	4 cut(s)	44, 107, 156, 298
AgeI	ACCGGT	2 cut(s)	369, 501
AhdI	GACNNNNNGTC	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	3 cut(s)	195, 291, 351
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
AluBI	AGCT	4 cut(s)	208, 250, 409, 469
AluI	AGCT	4 cut(s)	208, 250, 409, 469
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	505
AlwI	GGATC	3 cut(s)	71, 84, 447
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	505
ApeKI	GCWGC	2 cut(s)	342, 409
AsiGI	ACCGGT	2 cut(s)	369, 501
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	6 cut(s)	7, 104, 193, 325, 377, 595
AsuC2I	CCSGG	5 cut(s)	102, 108, 151, 329, 396
AvaII	GGWCC	5 cut(s)	7, 104, 325, 377, 595
BaeGI	GKGCMC	1 cut(s)	509
BamHI	GGATCC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	329, 396
BccI	CCATC	2 cut(s)	551, 586
BceAI	ACGGC	6 cut(s)	70, 72, 349, 355, 463, 501
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	3 cut(s)	197, 293, 353
BcnI	CCSGG	5 cut(s)	102, 108, 151, 329, 396
BcoDI	GTCTC	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	599
BisI	GCNGC	5 cut(s)	112, 269, 284, 343, 410
BlsI	GCNGC	5 cut(s)	113, 270, 285, 344, 411
Bme1390I	CCNGG	8 cut(s)	102, 108, 151, 197, 293, 329, 353, 396
Bme18I	GGWCC	5 cut(s)	7, 104, 325, 377, 595
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	6 cut(s)	7, 104, 193, 325, 377, 595
BmiI	GGNNCC	4 cut(s)	49, 78, 106, 282
BmrFI	CCNGG	8 cut(s)	102, 108, 151, 197, 293, 329, 353, 396
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	272
BpuMI	CCSGG	5 cut(s)	102, 108, 151, 329, 396
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	5 cut(s)	72, 150, 195, 351, 537
BsaWI	WCCGGW	3 cut(s)	50, 369, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 107, 156, 298
Bse118I	RCCGGY	4 cut(s)	369, 379, 501, 522
Bse1I	ACTGG	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	3 cut(s)	197, 293, 353
BseDI	CCNNGG	5 cut(s)	72, 150, 195, 351, 537
BseGI	GGATG	2 cut(s)	361, 562
BseLI	CCNNNNNNNGG	4 cut(s)	44, 107, 156, 298
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	2 cut(s)	61, 479
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	329, 396
BseYI	CCCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	502
BshFI	GGCC	1 cut(s)	194
BshTI	ACCGGT	2 cut(s)	369, 501
BsiEI	CGRYCG	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	509
BslFI	GGGAC	4 cut(s)	133, 167, 344, 509
BslI	CCNNNNNNNGG	4 cut(s)	44, 107, 156, 298
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	4 cut(s)	133, 167, 344, 509
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	76, 210, 439
BspANI	GGCC	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	4 cut(s)	49, 78, 106, 282
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	3 cut(s)	71, 84, 447
BsrBI	CCGCTC	2 cut(s)	12, 27
BsrFI	RCCGGY	4 cut(s)	369, 379, 501, 522
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	4 cut(s)	369, 379, 501, 522
BssECI	CCNNGG	5 cut(s)	72, 150, 195, 351, 537
BssMI	GATC	3 cut(s)	76, 210, 439
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	3 cut(s)	197, 293, 353
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	385, 524
BstF5I	GGATG	2 cut(s)	361, 562
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	3 cut(s)	79, 213, 442
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	76, 210, 439
BstMCI	CGRYCG	1 cut(s)	502
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 342
BstNI	CCWGG	3 cut(s)	197, 293, 353
BstSCI	CCNGG	8 cut(s)	100, 106, 149, 195, 291, 327, 351, 394
BstSFI	CTRYAG	1 cut(s)	599
BstSLI	GKGCMC	1 cut(s)	509
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	2 cut(s)	329, 396
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	194
BtgZI	GCGATG	1 cut(s)	320
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	361, 562
Cac8I	GCNNGC	2 cut(s)	385, 524
CfoI	GCGC	1 cut(s)	528
Cfr10I	RCCGGY	4 cut(s)	369, 379, 501, 522
Cfr13I	GGNCC	6 cut(s)	7, 104, 193, 325, 377, 595
CpoI	CGGWCCG	1 cut(s)	377
CseI	GACGC	2 cut(s)	48, 443
CspAI	ACCGGT	2 cut(s)	369, 501
CspI	CGGWCCG	1 cut(s)	377
CviAII	CATG	2 cut(s)	115, 529
DpnI	GATC	3 cut(s)	78, 212, 441
DpnII	GATC	3 cut(s)	76, 210, 439
DrdI	GACNNNNNNGTC	1 cut(s)	14
DriI	GACNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	291
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	3 cut(s)	160, 293, 476
Eco47I	GGWCC	5 cut(s)	7, 104, 325, 377, 595
Eco57I	CTGAAG	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	195, 291, 351
FaeI	CATG	2 cut(s)	118, 532
FaiI	YATR	4 cut(s)	116, 347, 530, 590
FaqI	GGGAC	4 cut(s)	133, 167, 344, 509
FatI	CATG	2 cut(s)	114, 528
FauI	CCCGC	2 cut(s)	32, 405
Fnu4HI	GCNGC	5 cut(s)	112, 269, 284, 343, 410
FokI	GGATG	2 cut(s)	368, 569
Fsp4HI	GCNGC	5 cut(s)	112, 269, 284, 343, 410
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	5 cut(s)	112, 269, 284, 343, 410
GsaI	CCCAGC	1 cut(s)	275
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	194
HgaI	GACGC	2 cut(s)	48, 443
HhaI	GCGC	1 cut(s)	528
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	118, 532
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	121, 401
Hpy166II	GTNNAC	3 cut(s)	325, 483, 507
Hpy188I	TCNGA	6 cut(s)	31, 76, 91, 163, 377, 406
Hpy188III	TCNNGA	4 cut(s)	51, 185, 240, 443
Hpy8I	GTNNAC	3 cut(s)	325, 483, 507
Hpy99I	CGWCG	7 cut(s)	20, 64, 191, 230, 341, 437, 449
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	2 cut(s)	189, 509
HpyCH4V	TGCA	5 cut(s)	345, 367, 507, 584, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 342
HpySE526I	ACGT	2 cut(s)	189, 509
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	118, 532
HspAI	GCGC	1 cut(s)	526
Kpn2I	TCCGGA	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	522
KroNI	GCCGGC	1 cut(s)	524
Kzo9I	GATC	3 cut(s)	76, 210, 439
LmnI	GCTCC	6 cut(s)	17, 32, 53, 280, 406, 466
Lsp1109I	GCAGC	2 cut(s)	329, 396
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	2 cut(s)	189, 509
MalI	GATC	3 cut(s)	78, 212, 441
MbiI	CCGCTC	2 cut(s)	12, 27
MboI	GATC	3 cut(s)	76, 210, 439
MboII	GAAGA	2 cut(s)	57, 308
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	509
MlyI	GAGTC	2 cut(s)	115, 395
MmeI	TCCRAC	3 cut(s)	54, 114, 141
MroI	TCCGGA	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	522
MseI	TTAA	1 cut(s)	204
MspR9I	CCNGG	8 cut(s)	102, 108, 151, 197, 293, 329, 353, 396
MvaI	CCWGG	3 cut(s)	197, 293, 353
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	268, 342
NaeI	GCCGGC	1 cut(s)	524
NciI	CCSGG	5 cut(s)	102, 108, 151, 329, 396
NdeII	GATC	3 cut(s)	76, 210, 439
NgoMIV	GCCGGC	1 cut(s)	522
NlaIII	CATG	2 cut(s)	118, 532
NlaIV	GGNNCC	4 cut(s)	49, 78, 106, 282
NmeAIII	GCCGAG	2 cut(s)	312, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PdiI	GCCGGC	1 cut(s)	524
PinAI	ACCGGT	2 cut(s)	369, 501
PkrI	GCNGC	5 cut(s)	113, 270, 285, 344, 411
PleI	GAGTC	2 cut(s)	115, 395
PpsI	GAGTC	2 cut(s)	115, 395
Psp6I	CCWGG	3 cut(s)	195, 291, 351
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	3 cut(s)	195, 291, 351
PspN4I	GGNNCC	4 cut(s)	49, 78, 106, 282
PspPI	GGNCC	6 cut(s)	7, 104, 193, 325, 377, 595
PstI	CTGCAG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	76
Rsr2I	CGGWCCG	1 cut(s)	377
RsrII	CGGWCCG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	5 cut(s)	112, 269, 284, 343, 410
Sau3AI	GATC	3 cut(s)	76, 210, 439
Sau96I	GGNCC	6 cut(s)	7, 104, 193, 325, 377, 595
SchI	GAGTC	2 cut(s)	115, 395
ScrFI	CCNGG	8 cut(s)	102, 108, 151, 197, 293, 329, 353, 396
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	5 cut(s)	7, 104, 325, 377, 595
StyD4I	CCNGG	8 cut(s)	100, 106, 149, 195, 291, 327, 351, 394
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	2 cut(s)	192, 512
TaqI	TCGA	4 cut(s)	186, 213, 239, 432
TauI	GCSGC	3 cut(s)	114, 271, 286
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	2 cut(s)	342, 409
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	4, 243
VneI	GTGCAC	1 cut(s)	505
VpaK11BI	GGWCC	5 cut(s)	7, 104, 325, 377, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.