Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Reverse (-)

40915498 .. 40916475

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG310900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAAGCTCATGAAAATCAACAGCCTCAGCCCCAAACGCTTCTTCCGCTCTAAGAAGGACCGCTCCGCCGTTTCCCGCTCCGACCCACCGTCCTTTGGCTCCGGAACCGACGTCGTCTTCCTCCTCGGATCCCCTGCAGTCCGACCACAAGCCCCGGCCCTGCGGCATGGGGACTCCTACGAGAGTTCTGCCGGAAATATCCGGCGACTGGTCAGATTTCTCTGCCGACACTCATCTCGACGTGGTCCAGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

85

Amino Acids

9.39

Weight (kDa)

11.72

Isoelectric Point (pI)

86.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccBSI	CCGCTC	3 cut(s)	48, 63, 78
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	5 cut(s)	46, 61, 66, 76, 163
AclWI	GGATC	2 cut(s)	123, 136
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	95, 208
AhdI	GACNNNNNGTC	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	2 cut(s)	123, 136
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	1 cut(s)	156
AspS9I	GGNCC	3 cut(s)	58, 157, 245
AsuC2I	CCSGG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	58, 245
BamHI	GGATCC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	155, 249
Bme18I	GGWCC	2 cut(s)	58, 245
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	3 cut(s)	58, 157, 245
BmiI	GGNNCC	3 cut(s)	100, 106, 130
BmrFI	CCNGG	2 cut(s)	155, 249
BpiI	GAAGAC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	124, 153
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 208
Bse1I	ACTGG	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	124, 153
BseLI	CCNNNNNNNGG	2 cut(s)	95, 208
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	158
BsiSI	CCGG	4 cut(s)	102, 155, 192, 202
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	95, 208
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	158
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	128
BspACI	CCGC	5 cut(s)	46, 61, 66, 76, 163
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	39
BspEI	TCCGGA	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	100, 106, 130
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	2 cut(s)	123, 136
BsrBI	CCGCTC	3 cut(s)	48, 63, 78
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	124, 153
BssMI	GATC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	26, 51
BstKTI	GATC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 45
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	153, 247
BstSFI	CTRYAG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	242
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	58, 157, 245
CviAII	CATG	2 cut(s)	10, 167
CviJI	RGCY	6 cut(s)	7, 24, 30, 99, 152, 158
CviKI_1	RGCY	6 cut(s)	7, 24, 30, 99, 152, 158
DdeI	CTNAG	2 cut(s)	26, 51
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
DriI	GACNNNNNGTC	1 cut(s)	88
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	58, 245
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	13, 170
FaiI	YATR	2 cut(s)	11, 168
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	9, 166
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	4 cut(s)	102, 155, 192, 202
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	13, 170
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	4 cut(s)	102, 155, 192, 202
Hpy188I	TCNGA	4 cut(s)	82, 128, 143, 215
Hpy188III	TCNNGA	3 cut(s)	10, 102, 237
Hpy99I	CGWCG	3 cut(s)	113, 116, 243
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	111, 241
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 45
HpyF3I	CTNAG	2 cut(s)	26, 51
HpySE526I	ACGT	2 cut(s)	111, 241
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	13, 170
Kpn2I	TCCGGA	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	128
LmnI	GCTCC	3 cut(s)	68, 83, 104
LpnPI	CCDG	8 cut(s)	115, 147, 168, 173, 194, 205, 215, 234
MaeII	ACGT	2 cut(s)	111, 241
MalI	GATC	1 cut(s)	130
MbiI	CCGCTC	3 cut(s)	48, 63, 78
MboI	GATC	1 cut(s)	128
MboII	GAAGA	2 cut(s)	34, 109
MflI	RGATCY	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	105, 166
MnlI	CCTC	3 cut(s)	35, 131, 134
MroI	TCCGGA	1 cut(s)	101
MseI	TTAA	1 cut(s)	256
MspI	CCGG	4 cut(s)	102, 155, 192, 202
MspR9I	CCNGG	2 cut(s)	155, 249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	36, 45
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	13, 170
NlaIV	GGNNCC	3 cut(s)	100, 106, 130
PagI	TCATGA	1 cut(s)	9
PflFI	GACNNNGTC	2 cut(s)	113, 243
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	3 cut(s)	100, 106, 130
PspPI	GGNCC	3 cut(s)	58, 157, 245
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	128
PsyI	GACNNNGTC	2 cut(s)	113, 243
SaqAI	TTAA	1 cut(s)	256
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	3 cut(s)	58, 157, 245
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	155, 249
SetI	ASST	4 cut(s)	9, 114, 244, 253
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	2 cut(s)	58, 245
SsiI	CCGC	5 cut(s)	46, 61, 66, 76, 163
StyD4I	CCNGG	2 cut(s)	153, 247
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	2 cut(s)	114, 244
TaqI	TCGA	1 cut(s)	238
TauI	GCSGC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	256
Tru9I	TTAA	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	17, 26
Tth111I	GACNNNGTC	2 cut(s)	113, 243
VpaK11BI	GGWCC	2 cut(s)	58, 245
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.