Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Forward (+)

17869443 .. 17869643

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAAGCTCATGAAAATCAACAGCCTCAGCCCCAAACGGCTCTTCCGCTCTAAGAAGGACCGCTCCGCCGTTTCCCGCTCCGACCCACCGTCATTTGGCTCCGGAACGGCGTCGTCTTCCTCCTCGGATCCCCTGCCGTCCGACCACAAGCCCGGGCGTCGTCTTCCTCCTCGGAGCTGCGGGAGGACTTTGCTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

66

Amino Acids

7.18

Weight (kDa)

11.57

Isoelectric Point (pI)

90.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	48, 63, 78
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	5 cut(s)	46, 61, 66, 76, 180
AclWI	GGATC	2 cut(s)	122, 135
AcyI	GRCGYC	2 cut(s)	110, 157
AfiI	CCNNNNNNNGG	1 cut(s)	95
AhdI	GACNNNNNGTC	1 cut(s)	88
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	7, 177
AluI	AGCT	2 cut(s)	7, 177
AlwI	GGATC	2 cut(s)	122, 135
Ama87I	CYCGRG	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	58
AsuC2I	CCSGG	2 cut(s)	153, 154
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	108, 155
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	164
BceAI	ACGGC	4 cut(s)	53, 53, 121, 123
BcnI	CCSGG	2 cut(s)	153, 154
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	153, 154
Bme18I	GGWCC	1 cut(s)	58
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	100, 129
BmrFI	CCNGG	2 cut(s)	153, 154
BpiI	GAAGAC	2 cut(s)	108, 155
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	153, 154
BsaHI	GRCGYC	2 cut(s)	110, 157
BsaJI	CCNNGG	3 cut(s)	123, 152, 170
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	101
BseDI	CCNNGG	3 cut(s)	123, 152, 170
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	112, 159
BseXI	GCAGC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	102, 153
BslI	CCNNNNNNNGG	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	152
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	5 cut(s)	46, 61, 66, 76, 180
BspCNI	CTCAG	1 cut(s)	39
BspEI	TCCGGA	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	100, 129
BspPI	GGATC	2 cut(s)	122, 135
BspQI	GCTCTTC	1 cut(s)	47
BsrBI	CCGCTC	3 cut(s)	48, 63, 78
BssECI	CCNNGG	3 cut(s)	123, 152, 170
BssMI	GATC	1 cut(s)	127
BssNI	GRCGYC	2 cut(s)	110, 157
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	2 cut(s)	110, 157
BstDEI	CTNAG	2 cut(s)	26, 51
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	151, 152
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	2 cut(s)	108, 155
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	58
Cfr9I	CCCGGG	1 cut(s)	152
CseI	GACGC	2 cut(s)	99, 146
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	7 cut(s)	7, 24, 30, 40, 99, 151, 177
CviKI_1	RGCY	7 cut(s)	7, 24, 30, 40, 99, 151, 177
DdeI	CTNAG	2 cut(s)	26, 51
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DriI	GACNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	47
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	152
FaeI	CATG	1 cut(s)	13
FaiI	YATR	2 cut(s)	11, 199
FatI	CATG	1 cut(s)	9
FauI	CCCGC	2 cut(s)	83, 173
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	178
HapII	CCGG	2 cut(s)	102, 153
HgaI	GACGC	2 cut(s)	99, 146
Hin1I	GRCGYC	2 cut(s)	110, 157
Hin1II	CATG	1 cut(s)	13
HpaII	CCGG	2 cut(s)	102, 153
Hpy188I	TCNGA	4 cut(s)	82, 127, 142, 174
Hpy188III	TCNNGA	2 cut(s)	10, 102
Hpy99I	CGWCG	2 cut(s)	115, 162
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	26, 51
Hsp92I	GRCGYC	2 cut(s)	110, 157
Hsp92II	CATG	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	127
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	4 cut(s)	68, 83, 104, 174
LpnPI	CCDG	3 cut(s)	115, 146, 166
Lsp1109I	GCAGC	1 cut(s)	164
MalI	GATC	1 cut(s)	129
MbiI	CCGCTC	3 cut(s)	48, 63, 78
MboI	GATC	1 cut(s)	127
MboII	GAAGA	3 cut(s)	34, 108, 155
MflI	RGATCY	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	105, 165
MnlI	CCTC	6 cut(s)	35, 130, 133, 177, 177, 180
MroI	TCCGGA	1 cut(s)	101
MspI	CCGG	2 cut(s)	102, 153
MspR9I	CCNGG	2 cut(s)	153, 154
NciI	CCSGG	2 cut(s)	153, 154
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	100, 129
PagI	TCATGA	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	100, 129
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	47
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	153, 154
SetI	ASST	2 cut(s)	9, 179
SinI	GGWCC	1 cut(s)	58
SmaI	CCCGGG	1 cut(s)	154
SrfI	GCCCGGGC	1 cut(s)	154
SsiI	CCGC	5 cut(s)	46, 61, 66, 76, 180
StyD4I	CCNGG	2 cut(s)	151, 152
TaaI	ACNGT	1 cut(s)	90
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	17, 26
TspMI	CCCGGG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	58
XmaI	CCCGGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.