Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000507.1

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Reverse (-)

8476 .. 9674

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000507.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgaggcccagtgggactttggcggtggaaattcatacatgcatcatgaaccacgtactggagattatagattccatgaaggaatatgtatgtgaagtagagatgacatcctcagccccaaacgcctcttccgctctaagaaggactgcccagccgtttcccgctccgacccaccgtcctttggctcctgaaccgacgtcgtcttcctcctcggatcccctgccgtccgaccacaagcccgggccctgcggcatggggactcctacgaggattctgccggaaatatccggcgactggtcggatttctctgccgacactcatctcgacgtggtccaggtgtttaagttgatcgacagagacaacgatggagtcgtgtcgagaaaagatctggaggctctgctgaagcggctgggagcggagccgccgagccaggaagaggtggcaatgatgttgagcgaggtggaccgggacggcaacggctgcatacccctggatgccttgttgcaccggttcggaccggcttgcgaattggcggccgactcggagctgcgggaggactttgctcttatgatggagctgcagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

195

Amino Acids

21.29

Weight (kDa)

4.66

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccBSI	CCGCTC	3 cut(s)	134, 164, 416
AciI	CCGC	9 cut(s)	23, 132, 162, 249, 406, 416, 422, 533, 550
AclWI	GGATC	2 cut(s)	209, 222
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	4 cut(s)	58, 181, 294, 436
AgeI	ACCGGT	1 cut(s)	507
AhdI	GACNNNNNGTC	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	328
AjnI	CCWGG	3 cut(s)	333, 429, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
AluBI	AGCT	2 cut(s)	547, 577
AluI	AGCT	2 cut(s)	547, 577
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	209, 222
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	5, 242, 534
ApaI	GGGCCC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	480, 547, 577
ApoI	RAATTY	1 cut(s)	30
AsiGI	ACCGGT	1 cut(s)	507
AspS9I	GGNCC	6 cut(s)	6, 242, 243, 331, 463, 515
AsuC2I	CCSGG	3 cut(s)	240, 241, 467
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	3 cut(s)	331, 463, 515
BaeGI	GKGCMC	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	467, 534, 564
BccI	CCATC	2 cut(s)	359, 565
BceAI	ACGGC	4 cut(s)	139, 208, 487, 493
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	3 cut(s)	335, 431, 491
BcnI	CCSGG	3 cut(s)	240, 241, 467
BcoDI	GTCTC	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	578
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	7 cut(s)	250, 407, 422, 481, 534, 548, 578
BlsI	GCNGC	7 cut(s)	251, 408, 423, 482, 535, 549, 579
Bme1390I	CCNGG	6 cut(s)	240, 241, 335, 431, 467, 491
Bme18I	GGWCC	3 cut(s)	331, 463, 515
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	328
BmgT120I	GGNCC	6 cut(s)	6, 242, 243, 331, 463, 515
BmiI	GGNNCC	4 cut(s)	186, 216, 244, 420
BmrFI	CCNGG	6 cut(s)	240, 241, 335, 431, 467, 491
BmrI	ACTGGG	1 cut(s)	3
BmsI	GCATC	2 cut(s)	51, 484
BmuI	ACTGGG	1 cut(s)	3
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	80, 410
Bpu10I	CCTNAGC	1 cut(s)	112
BpuMI	CCSGG	3 cut(s)	240, 241, 467
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	210, 239, 489
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 181, 294, 436
Bse118I	RCCGGY	2 cut(s)	507, 517
Bse1I	ACTGG	3 cut(s)	9, 63, 299
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	335, 431, 491
BseDI	CCNNGG	3 cut(s)	210, 239, 489
BseGI	GGATG	2 cut(s)	107, 499
BseLI	CCNNNNNNNGG	4 cut(s)	58, 181, 294, 436
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	3 cut(s)	9, 63, 299
BseRI	GAGGAG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	246
BseX3I	CGGCCG	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	467, 534, 564
BseYI	CCCAGC	2 cut(s)	150, 409
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	3 cut(s)	7, 244, 536
BshTI	ACCGGT	1 cut(s)	507
BsiEI	CGRYCG	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	6 cut(s)	240, 278, 288, 466, 508, 518
BslFI	GGGAC	3 cut(s)	28, 271, 482
BslI	CCNNNNNNNGG	4 cut(s)	58, 181, 294, 436
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	3 cut(s)	28, 271, 482
BsnI	GGCC	3 cut(s)	7, 244, 536
BsoBI	CYCGRG	1 cut(s)	239
Bsp120I	GGGCCC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	214, 348, 385
BspACI	CCGC	9 cut(s)	23, 132, 162, 249, 406, 416, 422, 533, 550
BspANI	GGCC	3 cut(s)	7, 244, 536
BspCNI	CTCAG	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	186, 216, 244, 420
BspMAI	CTGCAG	1 cut(s)	582
BspPI	GGATC	2 cut(s)	209, 222
BsrBI	CCGCTC	3 cut(s)	134, 164, 416
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	2 cut(s)	507, 517
BsrI	ACTGG	3 cut(s)	9, 63, 299
BssAI	RCCGGY	2 cut(s)	507, 517
BssECI	CCNNGG	3 cut(s)	210, 239, 489
BssMI	GATC	3 cut(s)	214, 348, 385
BssNI	GRCGYC	1 cut(s)	197
Bst2UI	CCWGG	3 cut(s)	335, 431, 491
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	133, 429
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	112, 137
BstF5I	GGATG	2 cut(s)	107, 499
BstKTI	GATC	3 cut(s)	217, 351, 388
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	3 cut(s)	214, 348, 385
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 131, 406, 480
BstNI	CCWGG	3 cut(s)	335, 431, 491
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	6 cut(s)	238, 239, 333, 429, 465, 489
BstSFI	CTRYAG	1 cut(s)	578
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	467, 534, 564
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	214, 385
BstYI	RGATCY	2 cut(s)	214, 385
BstZI	CGGCCG	1 cut(s)	534
BsuRI	GGCC	3 cut(s)	7, 244, 536
BtrI	CACGTC	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	107, 499
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	523
CciI	TCATGA	1 cut(s)	45
Cfr10I	RCCGGY	2 cut(s)	507, 517
Cfr13I	GGNCC	6 cut(s)	6, 242, 243, 331, 463, 515
Cfr9I	CCCGGG	1 cut(s)	239
CpoI	CGGWCCG	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	56
CspAI	ACCGGT	1 cut(s)	507
CspI	CGGWCCG	1 cut(s)	515
CviAII	CATG	4 cut(s)	39, 46, 76, 253
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	112, 137
DpnI	GATC	3 cut(s)	216, 350, 387
DpnII	GATC	3 cut(s)	214, 348, 385
DriI	GACNNNNNGTC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	534
EagI	CGGCCG	1 cut(s)	534
Eam1104I	CTCTTC	2 cut(s)	133, 429
Eam1105I	GACNNNNNGTC	1 cut(s)	174
EarI	CTCTTC	2 cut(s)	133, 429
EclXI	CGGCCG	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	3 cut(s)	331, 463, 515
Eco52I	CGGCCG	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	3 cut(s)	333, 429, 489
EcoT22I	ATGCAT	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	4 cut(s)	42, 49, 79, 256
FaqI	GGGAC	3 cut(s)	28, 271, 482
FatI	CATG	4 cut(s)	38, 45, 75, 252
FauI	CCCGC	2 cut(s)	169, 543
Fnu4HI	GCNGC	7 cut(s)	250, 407, 422, 481, 534, 548, 578
FokI	GGATG	2 cut(s)	94, 506
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	7 cut(s)	250, 407, 422, 481, 534, 548, 578
GluI	GCNGC	7 cut(s)	250, 407, 422, 481, 534, 548, 578
GsaI	CCCAGC	2 cut(s)	154, 413
GsuI	CTGGAG	2 cut(s)	80, 410
HaeIII	GGCC	3 cut(s)	7, 244, 536
HapII	CCGG	6 cut(s)	240, 278, 288, 466, 508, 518
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	42, 49, 79, 256
HinfI	GANTC	5 cut(s)	71, 259, 271, 369, 539
HpaII	CCGG	6 cut(s)	240, 278, 288, 466, 508, 518
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	6 cut(s)	168, 214, 229, 301, 515, 544
Hpy188III	TCNNGA	5 cut(s)	46, 188, 323, 378, 389
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	3 cut(s)	199, 202, 329
HpyAV	CCTTC	2 cut(s)	73, 135
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	3 cut(s)	54, 197, 327
HpyCH4V	TGCA	4 cut(s)	42, 483, 505, 580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 131, 406, 480
HpyF3I	CTNAG	2 cut(s)	112, 137
HpySE526I	ACGT	3 cut(s)	54, 197, 327
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	42, 49, 79, 256
Kzo9I	GATC	3 cut(s)	214, 348, 385
LmnI	GCTCC	6 cut(s)	169, 190, 413, 418, 544, 574
Lsp1109I	GCAGC	3 cut(s)	467, 534, 564
LweI	GCATC	2 cut(s)	51, 484
MaeII	ACGT	3 cut(s)	54, 197, 327
MalI	GATC	3 cut(s)	216, 350, 387
MbiI	CCGCTC	3 cut(s)	134, 164, 416
MboI	GATC	3 cut(s)	214, 348, 385
MboII	GAAGA	3 cut(s)	120, 195, 446
MflI	RGATCY	2 cut(s)	214, 385
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	30, 527
MlyI	GAGTC	3 cut(s)	253, 378, 533
MmeI	TCCRAC	3 cut(s)	191, 252, 279
MnlI	CCTC	9 cut(s)	121, 136, 217, 220, 261, 385, 430, 451, 547
Mph1103I	ATGCAT	1 cut(s)	44
MseI	TTAA	1 cut(s)	342
MspI	CCGG	6 cut(s)	240, 278, 288, 466, 508, 518
MspR9I	CCNGG	6 cut(s)	240, 241, 335, 431, 467, 491
MvaI	CCWGG	3 cut(s)	335, 431, 491
MwoI	GCNNNNNNNGC	4 cut(s)	122, 131, 406, 480
NciI	CCSGG	3 cut(s)	240, 241, 467
NdeII	GATC	3 cut(s)	214, 348, 385
NlaIII	CATG	4 cut(s)	42, 49, 79, 256
NlaIV	GGNNCC	4 cut(s)	186, 216, 244, 420
NmeAIII	GCCGAG	1 cut(s)	450
NsiI	ATGCAT	1 cut(s)	44
NspI	RCATGY	1 cut(s)	42
PagI	TCATGA	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	71, 271
PflFI	GACNNNGTC	2 cut(s)	199, 329
PflMI	CCANNNNNTGG	1 cut(s)	58
PinAI	ACCGGT	1 cut(s)	507
PkrI	GCNGC	7 cut(s)	251, 408, 423, 482, 535, 549, 579
PleI	GAGTC	3 cut(s)	253, 377, 533
PpsI	GAGTC	3 cut(s)	253, 377, 533
Ppu21I	YACGTR	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	333, 429, 489
PspFI	CCCAGC	2 cut(s)	150, 409
PspGI	CCWGG	3 cut(s)	333, 429, 489
PspN4I	GGNNCC	4 cut(s)	186, 216, 244, 420
PspOMI	GGGCCC	1 cut(s)	242
PspPI	GGNCC	6 cut(s)	6, 242, 243, 331, 463, 515
PstI	CTGCAG	1 cut(s)	582
PsuI	RGATCY	2 cut(s)	214, 385
PsyI	GACNNNGTC	2 cut(s)	199, 329
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
Rsr2I	CGGWCCG	1 cut(s)	515
RsrII	CGGWCCG	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	7 cut(s)	250, 407, 422, 481, 534, 548, 578
Sau3AI	GATC	3 cut(s)	214, 348, 385
Sau96I	GGNCC	6 cut(s)	6, 242, 243, 331, 463, 515
SchI	GAGTC	3 cut(s)	253, 378, 533
ScrFI	CCNGG	6 cut(s)	240, 241, 335, 431, 467, 491
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	57, 200, 330, 339, 441, 462, 549, 579
SfaNI	GCATC	2 cut(s)	51, 484
SfcI	CTRYAG	1 cut(s)	578
SinI	GGWCC	3 cut(s)	331, 463, 515
SmaI	CCCGGG	1 cut(s)	241
SrfI	GCCCGGGC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	30, 527
SsiI	CCGC	9 cut(s)	23, 132, 162, 249, 406, 416, 422, 533, 550
StyD4I	CCNGG	6 cut(s)	238, 239, 333, 429, 465, 489
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	3 cut(s)	57, 200, 330
TaqI	TCGA	3 cut(s)	324, 351, 377
TasI	AATT	2 cut(s)	30, 527
TauI	GCSGC	4 cut(s)	252, 409, 424, 536
TfiI	GAWTC	2 cut(s)	71, 271
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	3 cut(s)	480, 547, 577
TspDTI	ATGAA	3 cut(s)	23, 62, 92
TspMI	CCCGGG	1 cut(s)	239
TspRI	CASTG	1 cut(s)	16
Tth111I	GACNNNGTC	2 cut(s)	199, 329
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	3 cut(s)	331, 463, 515
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	1 cut(s)	42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmaI	CCCGGG	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.