Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Forward (+)

43509973 .. 43511556

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG337900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGCTCATGAAAATCAACAGCCTCAGCCCCAAACGCCTCTTCCGCTCCATGAAGGACCGCTCCGCTGTTTCCCGCTCCGCTGTTTCCCGCTCCGACCCACCGTCCTTTGGCTCCGGAACGGCGTCGTCTTCCTCCTCGGATCCCCTGCCGTCCGACCACAAGCCCGGACCCGGCGGCATGGTGACTCCCACGAGCGTTCTGCCGGAAATATCCGGGGACTGGTCGGATTTCTCTGCCGACACTCATCTCGACATGGCCCAGGCGTTTAAGCTGATCGATAGAGACAACGACGGAGTGGTGTCGAGAAAAGAGCTGGAGGCTCTGCTGAAGCGGCTGGGGGCGGAGCCGCCGAGCCAGGAAGAGGTGGCGATGATGTTGAGCGAGGTGGACCGGGACGGCGACGGCTGCATACCCCTGGAGGCCTTGTTGCACCGGTTCGGACCGGCTTGCGAACCGGCGGCCGACTCGGAGCTGCGGGAGGCTTTTGAGGTGTTCGACGCGGATCACGACGGCAAAATATCGGCGGAGGAGCTGTTCAGCGTGTTCACGGCGATAGGGGACGACCGGTGCACGTTAGAGGACTGCCGGCGCATGATAGCCGAGGTCGATAAGAACGGGGATGGGTTCGTCTGCTTTGAGGACTTTGCTCTTATGATGGAGCTGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

224

Amino Acids

24.47

Weight (kDa)

4.58

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	86 - 141	1.2e-11	EF-hand domain pair
EF-hand_6	PF13405	86 - 114	6e-07	EF-hand domain
EF-hand_1	PF00036	87 - 113	5.8e-06	EF hand domain
EF-hand_7	PF13499	157 - 220	1e-12	EF-hand domain pair
EF-hand_1	PF00036	158 - 185	6.9e-08	EF hand domain
EF-hand_6	PF13405	158 - 187	9.8e-08	EF-hand domain
EF-hand_5	PF13202	159 - 179	9.3e-07	EF hand
EF-hand_1	PF00036	195 - 221	2.5e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	4 cut(s)	48, 63, 78, 93
AccII	CGCG	1 cut(s)	503
AccIII	TCCGGA	1 cut(s)	116
AclWI	GGATC	3 cut(s)	137, 150, 513
AcoI	YGGCCR	1 cut(s)	462
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	4 cut(s)	110, 173, 222, 364
AgeI	ACCGGT	2 cut(s)	435, 567
AhdI	GACNNNNNGTC	1 cut(s)	103
AjnI	CCWGG	3 cut(s)	261, 357, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AloI	GAACNNNNNNTCC	2 cut(s)	521, 553
AluBI	AGCT	6 cut(s)	7, 274, 316, 475, 535, 664
AluI	AGCT	6 cut(s)	7, 274, 316, 475, 535, 664
Alw21I	GWGCWC	1 cut(s)	575
Alw26I	GTCTC	1 cut(s)	279
Alw44I	GTGCAC	1 cut(s)	571
AlwI	GGATC	3 cut(s)	137, 150, 513
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	3 cut(s)	258, 423, 462
ApaLI	GTGCAC	1 cut(s)	571
ApeKI	GCWGC	3 cut(s)	408, 475, 664
AsiGI	ACCGGT	2 cut(s)	435, 567
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	5 cut(s)	58, 170, 259, 391, 443
AsuC2I	CCSGG	4 cut(s)	168, 174, 217, 395
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	4 cut(s)	58, 170, 391, 443
BaeGI	GKGCMC	1 cut(s)	575
BamHI	GGATCC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	575
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	395, 462, 651
BccI	CCATC	2 cut(s)	617, 652
BceAI	ACGGC	6 cut(s)	136, 138, 415, 421, 529, 567
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	3 cut(s)	263, 359, 419
BcnI	CCSGG	4 cut(s)	168, 174, 217, 395
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	665
BisI	GCNGC	7 cut(s)	178, 335, 350, 409, 462, 476, 665
BlsI	GCNGC	7 cut(s)	179, 336, 351, 410, 463, 477, 666
Bme1390I	CCNGG	7 cut(s)	168, 174, 217, 263, 359, 395, 419
Bme18I	GGWCC	4 cut(s)	58, 170, 391, 443
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgT120I	GGNCC	5 cut(s)	58, 170, 259, 391, 443
BmiI	GGNNCC	4 cut(s)	115, 144, 172, 348
BmrFI	CCNGG	7 cut(s)	168, 174, 217, 263, 359, 395, 419
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	2 cut(s)	338, 440
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	4 cut(s)	168, 174, 217, 395
Bsa29I	ATCGAT	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	5 cut(s)	138, 216, 261, 417, 603
BsaWI	WCCGGW	3 cut(s)	116, 435, 567
BsaXI	ACNNNNNCTCC	4 cut(s)	413, 443, 521, 551
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 173, 222, 364
Bse118I	RCCGGY	5 cut(s)	435, 445, 457, 567, 588
Bse1I	ACTGG	1 cut(s)	227
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	3 cut(s)	263, 359, 419
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	5 cut(s)	138, 216, 261, 417, 603
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	4 cut(s)	110, 173, 222, 364
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	127, 545
BseSI	GKGCMC	1 cut(s)	575
BseX3I	CGGCCG	1 cut(s)	462
BseXI	GCAGC	3 cut(s)	395, 462, 651
BseYI	CCCAGC	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	2 cut(s)	465, 568
BshFI	GGCC	3 cut(s)	260, 425, 464
BshTI	ACCGGT	2 cut(s)	435, 567
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	2 cut(s)	465, 568
BsiHKAI	GWGCWC	1 cut(s)	575
BslFI	GGGAC	3 cut(s)	233, 410, 575
BslI	CCNNNNNNNGG	4 cut(s)	110, 173, 222, 364
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	3 cut(s)	233, 410, 575
BsnI	GGCC	3 cut(s)	260, 425, 464
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	142, 276, 505
BspANI	GGCC	3 cut(s)	260, 425, 464
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	279
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	4 cut(s)	115, 144, 172, 348
BspMAI	CTGCAG	1 cut(s)	669
BspPI	GGATC	3 cut(s)	137, 150, 513
BsrBI	CCGCTC	4 cut(s)	48, 63, 78, 93
BsrFI	RCCGGY	5 cut(s)	435, 445, 457, 567, 588
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	5 cut(s)	435, 445, 457, 567, 588
BssECI	CCNNGG	5 cut(s)	138, 216, 261, 417, 603
BssMI	GATC	3 cut(s)	142, 276, 505
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	3 cut(s)	263, 359, 419
Bst4CI	ACNGT	1 cut(s)	105
Bst6I	CTCTTC	2 cut(s)	47, 357
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	451, 590
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	3 cut(s)	145, 279, 508
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	3 cut(s)	142, 276, 505
BstMCI	CGRYCG	2 cut(s)	465, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 45, 334, 408
BstNI	CCWGG	3 cut(s)	263, 359, 419
BstSCI	CCNGG	7 cut(s)	166, 172, 215, 261, 357, 393, 417
BstSFI	CTRYAG	1 cut(s)	665
BstSLI	GKGCMC	1 cut(s)	575
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	3 cut(s)	395, 462, 651
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BstZI	CGGCCG	1 cut(s)	462
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	260, 425, 464
BsuTUI	ATCGAT	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	451, 590
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	1 cut(s)	594
Cfr10I	RCCGGY	5 cut(s)	435, 445, 457, 567, 588
Cfr13I	GGNCC	5 cut(s)	58, 170, 259, 391, 443
ClaI	ATCGAT	1 cut(s)	279
CpoI	CGGWCCG	1 cut(s)	443
CseI	GACGC	2 cut(s)	114, 509
CspAI	ACCGGT	2 cut(s)	435, 567
CspI	CGGWCCG	1 cut(s)	443
CviAII	CATG	5 cut(s)	10, 52, 181, 256, 595
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	144, 278, 507
DpnII	GATC	3 cut(s)	142, 276, 505
DriI	GACNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	462
EagI	CGGCCG	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	47, 357
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	2 cut(s)	47, 357
EciI	GGCGGA	2 cut(s)	359, 542
EclXI	CGGCCG	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	425
Eco47I	GGWCC	4 cut(s)	58, 170, 391, 443
Eco52I	CGGCCG	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	261, 357, 417
FaeI	CATG	5 cut(s)	13, 55, 184, 259, 598
FaiI	YATR	7 cut(s)	11, 53, 182, 257, 413, 596, 656
FaqI	GGGAC	3 cut(s)	233, 410, 575
FatI	CATG	5 cut(s)	9, 51, 180, 255, 594
FauI	CCCGC	3 cut(s)	83, 98, 471
Fnu4HI	GCNGC	7 cut(s)	178, 335, 350, 409, 462, 476, 665
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	7 cut(s)	178, 335, 350, 409, 462, 476, 665
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	7 cut(s)	178, 335, 350, 409, 462, 476, 665
GsaI	CCCAGC	1 cut(s)	341
GsuI	CTGGAG	2 cut(s)	338, 440
HaeIII	GGCC	3 cut(s)	260, 425, 464
HgaI	GACGC	2 cut(s)	114, 509
HhaI	GCGC	1 cut(s)	594
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	13, 55, 184, 259, 598
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HinfI	GANTC	2 cut(s)	187, 467
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	391, 549, 573
Hpy188I	TCNGA	6 cut(s)	97, 142, 157, 229, 443, 472
Hpy188III	TCNNGA	5 cut(s)	10, 117, 251, 306, 509
Hpy8I	GTNNAC	3 cut(s)	391, 549, 573
Hpy99I	CGWCG	5 cut(s)	130, 296, 407, 503, 515
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	411, 433, 573, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 45, 334, 408
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	575
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	5 cut(s)	13, 55, 184, 259, 598
HspAI	GCGC	1 cut(s)	592
Kpn2I	TCCGGA	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	588
KroNI	GCCGGC	1 cut(s)	590
Kzo9I	GATC	3 cut(s)	142, 276, 505
LmnI	GCTCC	9 cut(s)	53, 68, 83, 98, 119, 346, 472, 532, 661
Lsp1109I	GCAGC	3 cut(s)	395, 462, 651
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	144, 278, 507
MbiI	CCGCTC	4 cut(s)	48, 63, 78, 93
MboI	GATC	3 cut(s)	142, 276, 505
MboII	GAAGA	3 cut(s)	34, 123, 374
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	575
MlyI	GAGTC	2 cut(s)	181, 461
MmeI	TCCRAC	3 cut(s)	120, 180, 207
MroI	TCCGGA	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	588
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	68, 83
MspR9I	CCNGG	7 cut(s)	168, 174, 217, 263, 359, 395, 419
MvaI	CCWGG	3 cut(s)	263, 359, 419
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	4 cut(s)	36, 45, 334, 408
NaeI	GCCGGC	1 cut(s)	590
NciI	CCSGG	4 cut(s)	168, 174, 217, 395
NdeII	GATC	3 cut(s)	142, 276, 505
NgoMIV	GCCGGC	1 cut(s)	588
NlaIII	CATG	5 cut(s)	13, 55, 184, 259, 598
NlaIV	GGNNCC	4 cut(s)	115, 144, 172, 348
NmeAIII	GCCGAG	2 cut(s)	378, 628
NmuCI	GTSAC	1 cut(s)	184
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PdiI	GCCGGC	1 cut(s)	590
PinAI	ACCGGT	2 cut(s)	435, 567
PkrI	GCNGC	7 cut(s)	179, 336, 351, 410, 463, 477, 666
PleI	GAGTC	2 cut(s)	181, 461
PpsI	GAGTC	2 cut(s)	181, 461
Psp6I	CCWGG	3 cut(s)	261, 357, 417
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	3 cut(s)	261, 357, 417
PspN4I	GGNNCC	4 cut(s)	115, 144, 172, 348
PspPI	GGNCC	5 cut(s)	58, 170, 259, 391, 443
PstI	CTGCAG	1 cut(s)	669
PsuI	RGATCY	1 cut(s)	142
Rsr2I	CGGWCCG	1 cut(s)	443
RsrII	CGGWCCG	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	7 cut(s)	178, 335, 350, 409, 462, 476, 665
Sau3AI	GATC	3 cut(s)	142, 276, 505
Sau96I	GGNCC	5 cut(s)	58, 170, 259, 391, 443
SchI	GAGTC	2 cut(s)	181, 461
ScrFI	CCNGG	7 cut(s)	168, 174, 217, 263, 359, 395, 419
SduI	GDGCHC	1 cut(s)	575
SfcI	CTRYAG	1 cut(s)	665
SinI	GGWCC	4 cut(s)	58, 170, 391, 443
SseBI	AGGCCT	1 cut(s)	425
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	7 cut(s)	166, 172, 215, 261, 357, 393, 417
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	5 cut(s)	252, 279, 305, 498, 609
TauI	GCSGC	4 cut(s)	180, 337, 352, 464
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	408, 475, 664
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	17, 26, 68
TspGWI	ACGGA	1 cut(s)	309
VneI	GTGCAC	1 cut(s)	571
VpaK11BI	GGWCC	4 cut(s)	58, 170, 391, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.