Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Forward (+)

7987328 .. 7987999

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAGTTCATCAAAATTAGCCCCAAAAATCTCAGTCCGAAACGCCTCTTCCGGTCTAAGAAGGACCGGTCCGCCGTATCTCGCTCCGAACCGCCGTCGTTCGCGTCCGAAACGGCGTCTGCCTCGTCATCCTCTTCCTCATACACAATCCACAAGCTCGGGGCCGGCGCCGGCGGTGTAACCACGCCCACCAGCGTTTTGCCCGAAAGATCGGGTGAGTGGTCCGAGTTTTCGGCTGATCTGCAGCTCGACATGGCGCAACCGTTTAAACTTATAGACCGAGACAACGATGGAGTGGTGTCGAGGAAAGAACTCGAGGCTCTTCTGTGCCGGCTCGGTAACGACCCGCAGAGTCGAGAGGAGGTGACGTTGATGCTAAGCGAGGTGGACCGAGACGGTAACGGTTCAATCAGCCTCGAGGCTGTGTTAAACCAGGTCGGGCCGGTTTCCGGTCCAGCTGCCGACTCGGAACTGCGGGATGCGTTTGAAGTGTTTGACACGGATAACGATGGAAAAATATCGGCGGAGGAGCTTTTGAGCTTTTTCAGGGCAATCGGCGACGAAGGGTGCACGTTAGAGGAGTGCGGGCGCATGATAGCAGGGGTTGATAAGAACGGGGATGGATTCGTGTGCTTTGAGGAGTTTGCTCATATGATGGAGTTTCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

224

Amino Acids

24.26

Weight (kDa)

4.68

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	89 - 140	5.9e-10	EF-hand domain pair
EF-hand_7	PF13499	156 - 219	4.3e-13	EF-hand domain pair
EF-hand_1	PF00036	157 - 184	1.3e-08	EF hand domain
EF-hand_6	PF13405	157 - 186	6.5e-09	EF-hand domain
EF-hand_5	PF13202	158 - 181	7.1e-08	EF hand
EF-hand_1	PF00036	195 - 219	9.8e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	104
AciI	CCGC	7 cut(s)	72, 92, 174, 347, 475, 524, 585
AcyI	GRCGYC	2 cut(s)	116, 168
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	408, 488
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	5 cut(s)	157, 247, 458, 532, 540
AluI	AGCT	5 cut(s)	157, 247, 458, 532, 540
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	2 cut(s)	276, 387
Alw44I	GTGCAC	1 cut(s)	568
Ama87I	CYCGRG	3 cut(s)	158, 314, 416
AoxI	GGCC	2 cut(s)	162, 440
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	2 cut(s)	244, 458
AsiGI	ACCGGT	1 cut(s)	66
AspLEI	GCGC	3 cut(s)	170, 259, 591
AspS9I	GGNCC	7 cut(s)	64, 69, 162, 222, 388, 440, 452
AsuHPI	GGTGA	2 cut(s)	227, 376
AvaI	CYCGRG	3 cut(s)	158, 314, 416
AvaII	GGWCC	5 cut(s)	64, 69, 222, 388, 452
BaeGI	GKGCMC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	256, 445
BccI	CCATC	4 cut(s)	284, 503, 614, 649
BceAI	ACGGC	3 cut(s)	59, 79, 129
BciT130I	CCWGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	276, 387
BfmI	CTRYAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	2 cut(s)	245, 459
BlpI	GCTNAGC	1 cut(s)	377
BlsI	GCNGC	2 cut(s)	246, 460
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	5 cut(s)	64, 69, 222, 388, 452
BmeT110I	CYCGRG	3 cut(s)	158, 314, 416
BmgT120I	GGNCC	7 cut(s)	64, 69, 162, 222, 388, 440, 452
BmiI	GGNNCC	2 cut(s)	163, 169
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	363, 469
Bpu1102I	GCTNAGC	1 cut(s)	377
BsaHI	GRCGYC	2 cut(s)	116, 168
BsaWI	WCCGGW	3 cut(s)	51, 66, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse118I	RCCGGY	5 cut(s)	66, 164, 170, 330, 442
BseBI	CCWGG	1 cut(s)	434
BseGI	GGATG	3 cut(s)	128, 484, 625
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	46
BseRI	GAGGAG	4 cut(s)	374, 542, 593, 653
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	2 cut(s)	256, 445
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	164, 442
BshNI	GGYRCC	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	572
BsiHKCI	CYCGRG	3 cut(s)	158, 314, 416
BsiSI	CCGG	7 cut(s)	52, 67, 165, 171, 331, 443, 450
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	2 cut(s)	276, 387
BsmBI	CGTCTC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	164, 442
BsoBI	CYCGRG	3 cut(s)	158, 314, 416
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	2 cut(s)	209, 238
Bsp1720I	GCTNAGC	1 cut(s)	377
BspACI	CCGC	7 cut(s)	72, 92, 174, 347, 475, 524, 585
BspANI	GGCC	2 cut(s)	164, 442
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	163, 169
BspMAI	CTGCAG	1 cut(s)	246
BspQI	GCTCTTC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	5 cut(s)	66, 164, 170, 330, 442
BssAI	RCCGGY	5 cut(s)	66, 164, 170, 330, 442
BssMI	GATC	2 cut(s)	209, 238
BssNI	GRCGYC	2 cut(s)	116, 168
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	3 cut(s)	264, 398, 404
Bst6I	CTCTTC	3 cut(s)	53, 139, 327
BstACI	GRCGYC	2 cut(s)	116, 168
BstC8I	GCNNGC	4 cut(s)	166, 172, 332, 587
BstDEI	CTNAG	3 cut(s)	32, 57, 377
BstF5I	GGATG	3 cut(s)	128, 484, 625
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	3 cut(s)	170, 259, 591
BstKTI	GATC	2 cut(s)	212, 241
BstMAI	GTCTC	2 cut(s)	276, 387
BstMBI	GATC	2 cut(s)	209, 238
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	256, 445
BsuRI	GGCC	2 cut(s)	164, 442
BtsCI	GGATG	3 cut(s)	128, 484, 625
Cac8I	GCNNGC	4 cut(s)	166, 172, 332, 587
CfoI	GCGC	3 cut(s)	170, 259, 591
Cfr10I	RCCGGY	5 cut(s)	66, 164, 170, 330, 442
Cfr13I	GGNCC	7 cut(s)	64, 69, 162, 222, 388, 440, 452
CpoI	CGGWCCG	1 cut(s)	69
CseI	GACGC	2 cut(s)	93, 105
CsiI	ACCWGGT	1 cut(s)	432
CspAI	ACCGGT	1 cut(s)	66
CspI	CGGWCCG	1 cut(s)	69
CviAII	CATG	2 cut(s)	253, 592
DdeI	CTNAG	3 cut(s)	32, 57, 377
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	2 cut(s)	211, 240
DpnII	GATC	2 cut(s)	209, 238
DraI	TTTAAA	1 cut(s)	268
Eam1104I	CTCTTC	3 cut(s)	53, 139, 327
EarI	CTCTTC	3 cut(s)	53, 139, 327
EciI	GGCGGA	2 cut(s)	61, 539
Eco47I	GGWCC	5 cut(s)	64, 69, 222, 388, 452
Eco88I	CYCGRG	3 cut(s)	158, 314, 416
EcoRII	CCWGG	1 cut(s)	432
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	2 cut(s)	256, 595
FaiI	YATR	6 cut(s)	142, 254, 275, 593, 651, 653
FatI	CATG	2 cut(s)	252, 591
FauI	CCCGC	3 cut(s)	354, 468, 578
FauNDI	CATATG	1 cut(s)	651
Fnu4HI	GCNGC	2 cut(s)	245, 459
FokI	GGATG	3 cut(s)	115, 491, 632
Fsp4HI	GCNGC	2 cut(s)	245, 459
GlaI	GCGC	3 cut(s)	169, 258, 590
GluI	GCNGC	2 cut(s)	245, 459
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	164, 442
HapII	CCGG	7 cut(s)	52, 67, 165, 171, 331, 443, 450
HgaI	GACGC	2 cut(s)	93, 105
HhaI	GCGC	3 cut(s)	170, 259, 591
Hin1I	GRCGYC	2 cut(s)	116, 168
Hin1II	CATG	2 cut(s)	256, 595
Hin6I	GCGC	3 cut(s)	168, 257, 589
HinP1I	GCGC	3 cut(s)	168, 257, 589
HinfI	GANTC	3 cut(s)	352, 464, 624
HpaII	CCGG	7 cut(s)	52, 67, 165, 171, 331, 443, 450
HphI	GGTGA	2 cut(s)	227, 376
Hpy166II	GTNNAC	2 cut(s)	388, 570
Hpy188I	TCNGA	6 cut(s)	39, 88, 109, 226, 469, 666
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	2 cut(s)	388, 570
Hpy99I	CGWCG	2 cut(s)	100, 563
HpyAV	CCTTC	2 cut(s)	55, 557
HpyCH4III	ACNGT	3 cut(s)	264, 398, 404
HpyCH4IV	ACGT	2 cut(s)	368, 572
HpyCH4V	TGCA	2 cut(s)	244, 570
HpyF3I	CTNAG	3 cut(s)	32, 57, 377
HpySE526I	ACGT	2 cut(s)	368, 572
Hsp92I	GRCGYC	2 cut(s)	116, 168
Hsp92II	CATG	2 cut(s)	256, 595
HspAI	GCGC	3 cut(s)	168, 257, 589
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	3 cut(s)	164, 170, 330
KroNI	GCCGGC	3 cut(s)	166, 172, 332
Kzo9I	GATC	2 cut(s)	209, 238
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	89, 529
Lsp1109I	GCAGC	2 cut(s)	256, 445
LweI	GCATC	2 cut(s)	363, 469
MabI	ACCWGGT	1 cut(s)	432
MaeII	ACGT	2 cut(s)	368, 572
MaeIII	GTNAC	4 cut(s)	178, 338, 364, 398
MalI	GATC	2 cut(s)	211, 240
MboI	GATC	2 cut(s)	209, 238
MboII	GAAGA	3 cut(s)	40, 126, 314
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	1 cut(s)	15
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	361, 458
MreI	CGCCGGCG	1 cut(s)	170
MroNI	GCCGGC	3 cut(s)	164, 170, 330
MseI	TTAA	2 cut(s)	267, 428
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	7 cut(s)	52, 67, 165, 171, 331, 443, 450
MspR9I	CCNGG	1 cut(s)	434
MssI	GTTTAAAC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	1 cut(s)	104
NaeI	GCCGGC	3 cut(s)	166, 172, 332
NarI	GGCGCC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	651
NdeII	GATC	2 cut(s)	209, 238
NgoMIV	GCCGGC	3 cut(s)	164, 170, 330
NlaIII	CATG	2 cut(s)	256, 595
NlaIV	GGNNCC	2 cut(s)	163, 169
NmuCI	GTSAC	1 cut(s)	364
PaeR7I	CTCGAG	2 cut(s)	314, 416
PciSI	GCTCTTC	1 cut(s)	327
PdiI	GCCGGC	3 cut(s)	166, 172, 332
PfeI	GAWTC	1 cut(s)	624
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	246, 460
PleI	GAGTC	2 cut(s)	360, 458
PluTI	GGCGCC	1 cut(s)	171
PmeI	GTTTAAAC	1 cut(s)	268
PpsI	GAGTC	2 cut(s)	360, 458
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	163, 169
PspPI	GGNCC	7 cut(s)	64, 69, 162, 222, 388, 440, 452
PspXI	VCTCGAGB	2 cut(s)	314, 416
PstI	CTGCAG	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	458
Rsr2I	CGGWCCG	1 cut(s)	69
RsrII	CGGWCCG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	267, 428
SatI	GCNGC	2 cut(s)	245, 459
Sau3AI	GATC	2 cut(s)	209, 238
Sau96I	GGNCC	7 cut(s)	64, 69, 162, 222, 388, 440, 452
SchI	GAGTC	2 cut(s)	361, 458
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	572
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	2 cut(s)	363, 469
SfcI	CTRYAG	1 cut(s)	242
SfoI	GGCGCC	1 cut(s)	169
Sfr274I	CTCGAG	2 cut(s)	314, 416
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	5 cut(s)	64, 69, 222, 388, 452
SlaI	CTCGAG	2 cut(s)	314, 416
SmlI	CTYRAG	2 cut(s)	314, 416
SmoI	CTYRAG	2 cut(s)	314, 416
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	7 cut(s)	72, 92, 174, 347, 475, 524, 585
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	264, 398, 404
TaiI	ACGT	2 cut(s)	371, 575
TaqI	TCGA	5 cut(s)	249, 302, 315, 355, 417
TaqII	GACCGA	2 cut(s)	294, 405
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	624
Tru1I	TTAA	2 cut(s)	267, 428
Tru9I	TTAA	2 cut(s)	267, 428
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	2 cut(s)	244, 458
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	515
VneI	GTGCAC	1 cut(s)	568
VpaK11BI	GGWCC	5 cut(s)	64, 69, 222, 388, 452
XhoI	CTCGAG	2 cut(s)	314, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.