Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Forward (+)

37111617 .. 37113961

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAAGCTCATGAAAATCAACAGCCTCAGCCCCAAACGCCTCTTCCGCTCCAAGAAGGACCGCTCGGCCGTTTCCCGCTCCGACCCACCGTCCTTTGGCTCCGGAACGGCGTCGTCTTCCTCCTCGGATCCCCTGCCGTCCGACCACAAGCCCGCGCCCGGCGGCATGGTGACTCCCACGAGCGTTCTGCCGGAAATATCCGGGGACTGGTCGGATTTCTCTGCCGACACTCATCTCGACGTGGCCCAGGCGTTTAAGCTGATCGACAGAGACAACGACGGAGTGGTGTCGAGAAAAGAGCTGGAGGCTCTGCTGAAGCGGCTGGGGGCGGAGCCGCCGAGCCAGGAAGAGGTGGCGATGATGTTGAGCGAGGTTGACCGGGACGGCGACGGCTGCATACCCCTGGAGGCCTTGTTGCACCGGTTCGGACCGATGAGCGTTCCTGTGAAGTTCCTCAAAATCTTGGTGAAGTTCCACTCCGGAAGCGAAGAAAGCCTCTCCGACTCCATCGAAACCCTTCCCCAAGATCGCAATCATCTCAGATTTGGTCTGAATTTGAGCTTCATCTTCGTCTTCGTCGGTGCTTCCAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

199

Amino Acids

21.52

Weight (kDa)

5.74

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	81 - 108	3.5e-06	EF hand domain
EF-hand_7	PF13499	82 - 136	2e-11	EF-hand domain pair
EF-hand_6	PF13405	82 - 109	8.1e-07	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	48, 63, 78
AccII	CGCG	1 cut(s)	155
AccIII	TCCGGA	2 cut(s)	101, 479
AciI	CCGC	8 cut(s)	46, 61, 76, 153, 162, 319, 329, 335
AclWI	GGATC	2 cut(s)	122, 135
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	110
AfiI	CCNNNNNNNGG	4 cut(s)	95, 158, 207, 349
AgeI	ACCGGT	1 cut(s)	420
AhdI	GACNNNNNGTC	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	246, 342, 402
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	4 cut(s)	7, 259, 301, 561
AluI	AGCT	4 cut(s)	7, 259, 301, 561
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	122, 135
Aor13HI	TCCGGA	2 cut(s)	101, 479
AoxI	GGCC	3 cut(s)	66, 243, 408
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	553
AsiGI	ACCGGT	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	58, 244, 428
AsuC2I	CCSGG	3 cut(s)	159, 202, 380
AsuHPI	GGTGA	2 cut(s)	181, 478
AvaII	GGWCC	2 cut(s)	58, 428
BamHI	GGATCC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	178
BbsI	GAAGAC	2 cut(s)	108, 565
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	5 cut(s)	53, 121, 123, 400, 406
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	3 cut(s)	248, 344, 404
BcnI	CCSGG	3 cut(s)	159, 202, 380
BcoDI	GTCTC	1 cut(s)	264
BisI	GCNGC	4 cut(s)	163, 320, 335, 394
BlsI	GCNGC	4 cut(s)	164, 321, 336, 395
Bme1390I	CCNGG	6 cut(s)	159, 202, 248, 344, 380, 404
Bme18I	GGWCC	2 cut(s)	58, 428
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	58, 244, 428
BmiI	GGNNCC	3 cut(s)	100, 129, 333
BmrFI	CCNGG	6 cut(s)	159, 202, 248, 344, 380, 404
BpiI	GAAGAC	2 cut(s)	108, 565
BpmI	CTGGAG	2 cut(s)	323, 425
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	3 cut(s)	159, 202, 380
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	123, 201, 246, 402
BsaWI	WCCGGW	3 cut(s)	101, 420, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 158, 207, 349
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	531
BseAI	TCCGGA	2 cut(s)	101, 479
BseBI	CCWGG	3 cut(s)	248, 344, 404
BseDI	CCNNGG	4 cut(s)	123, 201, 246, 402
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	4 cut(s)	95, 158, 207, 349
BseMII	CTCAG	2 cut(s)	40, 553
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	112
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	380
BseYI	CCCAGC	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	68, 245, 410
BshTI	ACCGGT	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	7 cut(s)	102, 159, 191, 201, 379, 421, 480
BslFI	GGGAC	2 cut(s)	218, 395
BslI	CCNNNNNNNGG	4 cut(s)	95, 158, 207, 349
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	218, 395
BsnI	GGCC	3 cut(s)	68, 245, 410
Bsp13I	TCCGGA	2 cut(s)	101, 479
Bsp143I	GATC	3 cut(s)	127, 261, 526
BspACI	CCGC	8 cut(s)	46, 61, 76, 153, 162, 319, 329, 335
BspANI	GGCC	3 cut(s)	68, 245, 410
BspCNI	CTCAG	2 cut(s)	39, 552
BspEI	TCCGGA	2 cut(s)	101, 479
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	100, 129, 333
BspPI	GGATC	2 cut(s)	122, 135
BsrBI	CCGCTC	3 cut(s)	48, 63, 78
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	4 cut(s)	123, 201, 246, 402
BssMI	GATC	3 cut(s)	127, 261, 526
BssNI	GRCGYC	1 cut(s)	110
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	3 cut(s)	248, 344, 404
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	2 cut(s)	47, 342
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	26, 539
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	3 cut(s)	130, 264, 529
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	3 cut(s)	127, 261, 526
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 45, 319, 393, 492
BstNI	CCWGG	3 cut(s)	248, 344, 404
BstSCI	CCNGG	6 cut(s)	157, 200, 246, 342, 378, 402
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	2 cut(s)	108, 565
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	68, 245, 410
BtgZI	GCGATG	1 cut(s)	371
BtrI	CACGTC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	58, 244, 428
CpoI	CGGWCCG	1 cut(s)	428
CseI	GACGC	1 cut(s)	99
CspAI	ACCGGT	1 cut(s)	420
CspI	CGGWCCG	1 cut(s)	428
CviAII	CATG	2 cut(s)	10, 166
DdeI	CTNAG	2 cut(s)	26, 539
DpnI	GATC	3 cut(s)	129, 263, 528
DpnII	GATC	3 cut(s)	127, 261, 526
DriI	GACNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	47, 342
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	2 cut(s)	47, 342
EciI	GGCGGA	1 cut(s)	344
EclXI	CGGCCG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	58, 428
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	335
EcoRII	CCWGG	3 cut(s)	246, 342, 402
FaeI	CATG	2 cut(s)	13, 169
FaiI	YATR	4 cut(s)	11, 167, 398, 595
FaqI	GGGAC	2 cut(s)	218, 395
FatI	CATG	2 cut(s)	9, 165
FauI	CCCGC	2 cut(s)	83, 160
Fnu4HI	GCNGC	4 cut(s)	163, 320, 335, 394
Fsp4HI	GCNGC	4 cut(s)	163, 320, 335, 394
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	4 cut(s)	163, 320, 335, 394
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	2 cut(s)	323, 425
HaeIII	GGCC	3 cut(s)	68, 245, 410
HapII	CCGG	7 cut(s)	102, 159, 191, 201, 379, 421, 480
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	13, 169
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	2 cut(s)	172, 503
HpaII	CCGG	7 cut(s)	102, 159, 191, 201, 379, 421, 480
HphI	GGTGA	2 cut(s)	181, 478
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	8 cut(s)	82, 127, 142, 214, 428, 502, 542, 552
Hpy188III	TCNNGA	5 cut(s)	10, 102, 236, 291, 480
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	5 cut(s)	115, 242, 281, 392, 581
HpyAV	CCTTC	2 cut(s)	49, 527
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	2 cut(s)	396, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 45, 319, 393, 492
HpyF3I	CTNAG	2 cut(s)	26, 539
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	13, 169
HspAI	GCGC	1 cut(s)	155
Kpn2I	TCCGGA	2 cut(s)	101, 479
Kzo9I	GATC	3 cut(s)	127, 261, 526
LmnI	GCTCC	4 cut(s)	53, 83, 104, 331
Lsp1109I	GCAGC	1 cut(s)	380
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	129, 263, 528
MbiI	CCGCTC	3 cut(s)	48, 63, 78
MboI	GATC	3 cut(s)	127, 261, 526
MboII	GAAGA	6 cut(s)	34, 108, 359, 500, 559, 565
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	1 cut(s)	553
MlyI	GAGTC	2 cut(s)	166, 497
MmeI	TCCRAC	4 cut(s)	105, 165, 192, 525
MroI	TCCGGA	2 cut(s)	101, 479
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	1 cut(s)	255
MspI	CCGG	7 cut(s)	102, 159, 191, 201, 379, 421, 480
MspR9I	CCNGG	6 cut(s)	159, 202, 248, 344, 380, 404
MvaI	CCWGG	3 cut(s)	248, 344, 404
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	5 cut(s)	36, 45, 319, 393, 492
NciI	CCSGG	3 cut(s)	159, 202, 380
NdeII	GATC	3 cut(s)	127, 261, 526
NlaIII	CATG	2 cut(s)	13, 169
NlaIV	GGNNCC	3 cut(s)	100, 129, 333
NmeAIII	GCCGAG	2 cut(s)	44, 363
NmuCI	GTSAC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	516
PinAI	ACCGGT	1 cut(s)	420
PkrI	GCNGC	4 cut(s)	164, 321, 336, 395
PleI	GAGTC	2 cut(s)	166, 497
PpsI	GAGTC	2 cut(s)	166, 497
Psp6I	CCWGG	3 cut(s)	246, 342, 402
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	3 cut(s)	246, 342, 402
PspN4I	GGNNCC	3 cut(s)	100, 129, 333
PspPI	GGNCC	3 cut(s)	58, 244, 428
PsuI	RGATCY	1 cut(s)	127
Rsr2I	CGGWCCG	1 cut(s)	428
RsrII	CGGWCCG	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	4 cut(s)	163, 320, 335, 394
Sau3AI	GATC	3 cut(s)	127, 261, 526
Sau96I	GGNCC	3 cut(s)	58, 244, 428
SchI	GAGTC	2 cut(s)	166, 497
ScrFI	CCNGG	6 cut(s)	159, 202, 248, 344, 380, 404
SetI	ASST	7 cut(s)	9, 243, 261, 303, 354, 375, 563
SinI	GGWCC	2 cut(s)	58, 428
Sse9I	AATT	1 cut(s)	553
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	8 cut(s)	46, 61, 76, 153, 162, 319, 329, 335
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	6 cut(s)	157, 200, 246, 342, 378, 402
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	4 cut(s)	237, 264, 290, 510
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	1 cut(s)	553
TauI	GCSGC	3 cut(s)	165, 322, 337
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	17, 26, 553
TspGWI	ACGGA	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	58, 428
XapI	RAATTY	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.