Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Reverse (-)

41680574 .. 41681075

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGCTCATGAAAATCAACAGCCTCAGCCCCAAACGCTTCTTCCGCTCTAAGAAGGACCGCTCCGCCGTTTCCCGCTCCGACCCACCGTCCTTTGGCTCCGGAACCGACGTCGTCTTCCTCCTCGGATCCCCTGCAGTCCGACCACAAGCCCCGGCCCTGCGGCATGGGGACTCCTACGAGAGTTCTGCCGGAAATATCCGGCGACTGCGGCTGGGAGCGGAGCCGCCGAGCCAGGAAGAGGTGGAAATGATGTTAAGCGAGGTGGACCGGGACGGCGACGGCTGCATACCCCTGGATGCCTTGTTGCACCGGTTCGGACCGGCTTGCGAATCGGCGGCCGACTCGGAGCTGTGGGAGGACTTTGCTCTTATGATGGAGCTGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

130

Amino Acids

14.37

Weight (kDa)

5.4

Isoelectric Point (pI)

75.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccBSI	CCGCTC	4 cut(s)	48, 63, 78, 221
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	9 cut(s)	46, 61, 66, 76, 163, 211, 221, 227, 338
AclWI	GGATC	2 cut(s)	123, 136
AcoI	YGGCCR	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	95, 241
AgeI	ACCGGT	1 cut(s)	312
AhdI	GACNNNNNGTC	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	234, 294
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	7, 352, 382
AluI	AGCT	3 cut(s)	7, 352, 382
AlwI	GGATC	2 cut(s)	123, 136
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	2 cut(s)	156, 339
ApeKI	GCWGC	2 cut(s)	285, 382
AsiGI	ACCGGT	1 cut(s)	312
AspS9I	GGNCC	4 cut(s)	58, 157, 268, 320
AsuC2I	CCSGG	2 cut(s)	155, 272
AvaII	GGWCC	3 cut(s)	58, 268, 320
BamHI	GGATCC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	272, 369
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	3 cut(s)	53, 292, 298
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	2 cut(s)	236, 296
BcnI	CCSGG	2 cut(s)	155, 272
BfmI	CTRYAG	2 cut(s)	135, 383
BisI	GCNGC	6 cut(s)	164, 212, 227, 286, 339, 383
BlsI	GCNGC	6 cut(s)	165, 213, 228, 287, 340, 384
Bme1390I	CCNGG	4 cut(s)	155, 236, 272, 296
Bme18I	GGWCC	3 cut(s)	58, 268, 320
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgT120I	GGNCC	4 cut(s)	58, 157, 268, 320
BmiI	GGNNCC	4 cut(s)	100, 106, 130, 225
BmrFI	CCNGG	4 cut(s)	155, 236, 272, 296
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	155, 272
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	124, 153, 294
BsaWI	WCCGGW	2 cut(s)	101, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 241
Bse118I	RCCGGY	2 cut(s)	312, 322
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	236, 296
BseDI	CCNNGG	3 cut(s)	124, 153, 294
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	95, 241
BseMII	CTCAG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	113
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	272, 369
BseYI	CCCAGC	1 cut(s)	214
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	158, 341
BshTI	ACCGGT	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	342
BsiSI	CCGG	7 cut(s)	102, 155, 192, 202, 271, 313, 323
BslFI	GGGAC	2 cut(s)	185, 287
BslI	CCNNNNNNNGG	2 cut(s)	95, 241
BsmFI	GGGAC	2 cut(s)	185, 287
BsnI	GGCC	2 cut(s)	158, 341
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	128
BspACI	CCGC	9 cut(s)	46, 61, 66, 76, 163, 211, 221, 227, 338
BspANI	GGCC	2 cut(s)	158, 341
BspCNI	CTCAG	1 cut(s)	39
BspEI	TCCGGA	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	4 cut(s)	100, 106, 130, 225
BspMAI	CTGCAG	2 cut(s)	139, 387
BspPI	GGATC	2 cut(s)	123, 136
BsrBI	CCGCTC	4 cut(s)	48, 63, 78, 221
BsrFI	RCCGGY	2 cut(s)	312, 322
BssAI	RCCGGY	2 cut(s)	312, 322
BssECI	CCNNGG	3 cut(s)	124, 153, 294
BssMI	GATC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	236, 296
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	26, 51
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	128
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 45, 211, 285
BstNI	CCWGG	2 cut(s)	236, 296
BstSCI	CCNGG	4 cut(s)	153, 234, 270, 294
BstSFI	CTRYAG	2 cut(s)	135, 383
BstV1I	GCAGC	2 cut(s)	272, 369
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	158, 341
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	312, 322
Cfr13I	GGNCC	4 cut(s)	58, 157, 268, 320
CpoI	CGGWCCG	1 cut(s)	320
CspAI	ACCGGT	1 cut(s)	312
CspI	CGGWCCG	1 cut(s)	320
CviAII	CATG	2 cut(s)	10, 167
DdeI	CTNAG	2 cut(s)	26, 51
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
DriI	GACNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	234
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	55
EclXI	CGGCCG	1 cut(s)	339
Eco47I	GGWCC	3 cut(s)	58, 268, 320
Eco52I	CGGCCG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	234, 294
FaeI	CATG	2 cut(s)	13, 170
FaiI	YATR	4 cut(s)	11, 168, 290, 374
FaqI	GGGAC	2 cut(s)	185, 287
FatI	CATG	2 cut(s)	9, 166
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	6 cut(s)	164, 212, 227, 286, 339, 383
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	6 cut(s)	164, 212, 227, 286, 339, 383
GluI	GCNGC	6 cut(s)	164, 212, 227, 286, 339, 383
GsaI	CCCAGC	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	158, 341
HapII	CCGG	7 cut(s)	102, 155, 192, 202, 271, 313, 323
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	13, 170
HinfI	GANTC	3 cut(s)	173, 332, 344
HpaII	CCGG	7 cut(s)	102, 155, 192, 202, 271, 313, 323
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	5 cut(s)	82, 128, 143, 320, 349
Hpy188III	TCNNGA	2 cut(s)	10, 102
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	3 cut(s)	113, 116, 284
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	137, 288, 310, 385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 45, 211, 285
HpyF3I	CTNAG	2 cut(s)	26, 51
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	13, 170
Kpn2I	TCCGGA	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	128
LmnI	GCTCC	7 cut(s)	68, 83, 104, 218, 223, 349, 379
Lsp1109I	GCAGC	2 cut(s)	272, 369
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	1 cut(s)	111
MalI	GATC	1 cut(s)	130
MbiI	CCGCTC	4 cut(s)	48, 63, 78, 221
MboI	GATC	1 cut(s)	128
MboII	GAAGA	3 cut(s)	34, 109, 251
MflI	RGATCY	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	167, 338
MmeI	TCCRAC	2 cut(s)	105, 166
MnlI	CCTC	6 cut(s)	35, 131, 134, 235, 256, 352
MroI	TCCGGA	1 cut(s)	101
MseI	TTAA	1 cut(s)	257
MspI	CCGG	7 cut(s)	102, 155, 192, 202, 271, 313, 323
MspR9I	CCNGG	4 cut(s)	155, 236, 272, 296
MvaI	CCWGG	2 cut(s)	236, 296
MwoI	GCNNNNNNNGC	4 cut(s)	36, 45, 211, 285
NciI	CCSGG	2 cut(s)	155, 272
NdeII	GATC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	13, 170
NlaIV	GGNNCC	4 cut(s)	100, 106, 130, 225
NmeAIII	GCCGAG	1 cut(s)	255
PagI	TCATGA	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	332
PflFI	GACNNNGTC	1 cut(s)	113
PinAI	ACCGGT	1 cut(s)	312
PkrI	GCNGC	6 cut(s)	165, 213, 228, 287, 340, 384
PleI	GAGTC	2 cut(s)	167, 338
PpsI	GAGTC	2 cut(s)	167, 338
Psp6I	CCWGG	2 cut(s)	234, 294
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	2 cut(s)	234, 294
PspN4I	GGNNCC	4 cut(s)	100, 106, 130, 225
PspPI	GGNCC	4 cut(s)	58, 157, 268, 320
PstI	CTGCAG	2 cut(s)	139, 387
PsuI	RGATCY	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	113
Rsr2I	CGGWCCG	1 cut(s)	320
RsrII	CGGWCCG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	6 cut(s)	164, 212, 227, 286, 339, 383
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	4 cut(s)	58, 157, 268, 320
SchI	GAGTC	2 cut(s)	167, 338
ScrFI	CCNGG	4 cut(s)	155, 236, 272, 296
SetI	ASST	6 cut(s)	9, 114, 246, 267, 354, 384
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	2 cut(s)	135, 383
SinI	GGWCC	3 cut(s)	58, 268, 320
SsiI	CCGC	9 cut(s)	46, 61, 66, 76, 163, 211, 221, 227, 338
StyD4I	CCNGG	4 cut(s)	153, 234, 270, 294
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	114
TauI	GCSGC	4 cut(s)	166, 214, 229, 341
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TseI	GCWGC	2 cut(s)	285, 382
TspDTI	ATGAA	2 cut(s)	17, 26
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	58, 268, 320
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.